10 20 30 40 50 60 70 80 3I6R - Header ----|----|----|----|----|----|----|----|----|----|----|----|----|----|----|----| Asymmetric UnitHEADER OXIDOREDUCTASE 07-JUL-09 3I6R
TITLE PLASMODIUM FALCIPARUM DIHYDROOROTATE DEHYDROGENASE BOUND TITLE 2 WITH TRIAZOLOPYRIMIDINE-BASED INHIBITOR DSM74
COMPND MOL_ID: 1; COMPND 2 MOLECULE: DIHYDROOROTATE DEHYDROGENASE HOMOLOG, COMPND 3 MITOCHONDRIAL; COMPND 4 CHAIN: A; COMPND 5 FRAGMENT: UNP RESIDUES 158-569 WITH 384-413 DELETED; COMPND 6 SYNONYM: DHODEHASE, DIHYDROOROTATE OXIDASE; COMPND 7 EC: 1.3.3.1; COMPND 8 ENGINEERED: YES
SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PLASMODIUM FALCIPARUM 3D7; SOURCE 3 ORGANISM_TAXID: 36329; SOURCE 4 GENE: PFF0160C; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET28B
KEYWDS PLASMODIUM FALCIPARUM, DIHYDROOROTATE DEHYDROGENASE, KEYWDS 2 TRIAZOLOPYRIMIDINE, INHIBITOR, DSM74, FAD, FLAVOPROTEIN, KEYWDS 3 MEMBRANE, MITOCHONDRION, MITOCHONDRION INNER MEMBRANE, KEYWDS 4 OXIDOREDUCTASE, PYRIMIDINE BIOSYNTHESIS, TRANSIT PEPTIDE
EXPDTA X-RAY DIFFRACTION
AUTHOR X.DENG,M.A.PHILLIPS
REVDAT 2 20-OCT-09 3I6R 1 JRNL REVDAT 1 28-JUL-09 3I6R 0
JRNL AUTH X.DENG,R.GUJJAR,F.EL MAZOUNI,W.KAMINSKY, JRNL AUTH 2 N.A.MALMQUIST,E.J.GOLDSMITH,P.K.RATHOD,M.A.PHILLIPS JRNL TITL STRUCTURAL PLASTICITY OF MALARIA DIHYDROOROTATE JRNL TITL 2 DEHYDROGENASE ALLOWS SELECTIVE BINDING OF DIVERSE JRNL TITL 3 CHEMICAL SCAFFOLDS. JRNL REF J.BIOL.CHEM. V. 284 26999 2009 JRNL REFN ISSN 0021-9258 JRNL PMID 19640844 JRNL DOI 10.1074/JBC.M109.028589
REMARK 1
REMARK 2 REMARK 2 RESOLUTION. 2.50 ANGSTROMS.
REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 18778 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.238 REMARK 3 R VALUE (WORKING SET) : 0.236 REMARK 3 FREE R VALUE : 0.276 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1013 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.50 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.57 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1356 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.45 REMARK 3 BIN R VALUE (WORKING SET) : 0.3440 REMARK 3 BIN FREE R VALUE SET COUNT : 81 REMARK 3 BIN FREE R VALUE : 0.2780 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2984 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 63 REMARK 3 SOLVENT ATOMS : 39 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 72.69 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.91000 REMARK 3 B22 (A**2) : 1.91000 REMARK 3 B33 (A**2) : -2.87000 REMARK 3 B12 (A**2) : 0.96000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.413 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.284 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.250 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 11.383 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.944 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.924 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3105 ; 0.008 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4190 ; 1.072 ; 1.992 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 376 ; 5.392 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 139 ;38.476 ;25.468 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 575 ;14.555 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 11 ;18.131 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 465 ; 0.068 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2291 ; 0.003 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1443 ; 0.196 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 2185 ; 0.303 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 106 ; 0.133 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 13 ; 0.276 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 3 ; 0.094 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1939 ; 0.444 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3022 ; 0.801 ; 2.000 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1360 ; 0.723 ; 3.000 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1167 ; 1.191 ; 4.500 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL
REMARK 4 REMARK 4 3I6R COMPLIES WITH FORMAT V. 3.20, 01-DEC-08
REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 17-JUL-09. REMARK 100 THE RCSB ID CODE IS RCSB054034.
REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 22-FEB-09 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : HIGH-RESOLUTION DOUBLE- REMARK 200 CRYSTAL MONOCHROMATOR REMARK 200 OPTICS : HIGH-RESOLUTION DOUBLE- REMARK 200 CRYSTAL MONOCHROMATOR REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 19853 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.500 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 7.500 REMARK 200 R MERGE (I) : 0.06300 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 32.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.75 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 7.70 REMARK 200 R MERGE FOR SHELL (I) : 0.62400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 3.400 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 3I65 REMARK 200 REMARK 200 REMARK: NULL
REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 60.70 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.13 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.16 M AMMONIUM SULFATE, 0.1 M REMARK 280 SODIUM ACETATE, PH 4.6, 18-20% PEG4000, 25% GLYCEROL, AND 10 REMARK 280 MM DTT, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K
REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 64 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 -X,-Y,Z REMARK 290 5555 Y,-X+Y,Z+1/3 REMARK 290 6555 X-Y,X,Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 46.18467 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 92.36933 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 46.18467 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 92.36933 REMARK 290 REMARK 290 REMARK: NULL
REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA.
REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000
REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 125 REMARK 465 GLY A 126 REMARK 465 SER A 127 REMARK 465 SER A 128 REMARK 465 HIS A 129 REMARK 465 HIS A 130 REMARK 465 HIS A 131 REMARK 465 HIS A 132 REMARK 465 HIS A 133 REMARK 465 HIS A 134 REMARK 465 SER A 135 REMARK 465 SER A 136 REMARK 465 GLY A 137 REMARK 465 LEU A 138 REMARK 465 VAL A 139 REMARK 465 PRO A 140 REMARK 465 ARG A 141 REMARK 465 GLY A 142 REMARK 465 SER A 143 REMARK 465 HIS A 144 REMARK 465 MET A 145 REMARK 465 ALA A 146 REMARK 465 SER A 147 REMARK 465 MET A 148 REMARK 465 THR A 149 REMARK 465 GLY A 150 REMARK 465 GLY A 151 REMARK 465 GLN A 152 REMARK 465 GLN A 153 REMARK 465 GLY A 154 REMARK 465 ARG A 155 REMARK 465 ASP A 156 REMARK 465 PRO A 157 REMARK 465 PHE A 158 REMARK 465 GLU A 159 REMARK 465 SER A 160 REMARK 465 SER A 567 REMARK 465 LYS A 568 REMARK 465 SER A 569
REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 CYS A 530 CB CYS A 530 SG -0.102 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 213 -135.29 49.90 REMARK 500 HIS A 214 32.95 -91.20 REMARK 500 ASP A 228 68.48 -116.88 REMARK 500 CYS A 233 30.14 -144.70 REMARK 500 ASN A 347 0.66 91.28 REMARK 500 ASN A 418 -154.43 -131.70 REMARK 500 LYS A 498 4.19 80.69 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 GLY A 350 LEU A 351 -45.06 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CHIRAL CENTERS REMARK 500 REMARK 500 UNEXPECTED CONFIGURATION OF THE FOLLOWING CHIRAL REMARK 500 CENTER(S) USING IMPROPER CA--C--CB--N CHIRALITY REMARK 500 M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (11X,I3,1X,A3,1X,A1,I4,A1,6X,F5.1,6X,A1,10X,A1,3X,A16) REMARK 500 REMARK 500 M RES CSSEQI IMPROPER EXPECTED FOUND DETAILS REMARK 500 PHE A 533 19.3 L L OUTSIDE RANGE REMARK 500 REMARK 500 REMARK: NULL
REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE J5Z A 1001 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FMN A 1002 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ORO A 1003
REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3I65 RELATED DB: PDB REMARK 900 RELATED ID: 3I68 RELATED DB: PDB
DBREF 3I6R A 158 569 UNP Q08210 PYRD_PLAF7 158 569
SEQADV 3I6R MET A 125 UNP Q08210 EXPRESSION TAG SEQADV 3I6R GLY A 126 UNP Q08210 EXPRESSION TAG SEQADV 3I6R SER A 127 UNP Q08210 EXPRESSION TAG SEQADV 3I6R SER A 128 UNP Q08210 EXPRESSION TAG SEQADV 3I6R HIS A 129 UNP Q08210 EXPRESSION TAG SEQADV 3I6R HIS A 130 UNP Q08210 EXPRESSION TAG SEQADV 3I6R HIS A 131 UNP Q08210 EXPRESSION TAG SEQADV 3I6R HIS A 132 UNP Q08210 EXPRESSION TAG SEQADV 3I6R HIS A 133 UNP Q08210 EXPRESSION TAG SEQADV 3I6R HIS A 134 UNP Q08210 EXPRESSION TAG SEQADV 3I6R SER A 135 UNP Q08210 EXPRESSION TAG SEQADV 3I6R SER A 136 UNP Q08210 EXPRESSION TAG SEQADV 3I6R GLY A 137 UNP Q08210 EXPRESSION TAG SEQADV 3I6R LEU A 138 UNP Q08210 EXPRESSION TAG SEQADV 3I6R VAL A 139 UNP Q08210 EXPRESSION TAG SEQADV 3I6R PRO A 140 UNP Q08210 EXPRESSION TAG SEQADV 3I6R ARG A 141 UNP Q08210 EXPRESSION TAG SEQADV 3I6R GLY A 142 UNP Q08210 EXPRESSION TAG SEQADV 3I6R SER A 143 UNP Q08210 EXPRESSION TAG SEQADV 3I6R HIS A 144 UNP Q08210 EXPRESSION TAG SEQADV 3I6R MET A 145 UNP Q08210 EXPRESSION TAG SEQADV 3I6R ALA A 146 UNP Q08210 EXPRESSION TAG SEQADV 3I6R SER A 147 UNP Q08210 EXPRESSION TAG SEQADV 3I6R MET A 148 UNP Q08210 EXPRESSION TAG SEQADV 3I6R THR A 149 UNP Q08210 EXPRESSION TAG SEQADV 3I6R GLY A 150 UNP Q08210 EXPRESSION TAG SEQADV 3I6R GLY A 151 UNP Q08210 EXPRESSION TAG SEQADV 3I6R GLN A 152 UNP Q08210 EXPRESSION TAG SEQADV 3I6R GLN A 153 UNP Q08210 EXPRESSION TAG SEQADV 3I6R GLY A 154 UNP Q08210 EXPRESSION TAG SEQADV 3I6R ARG A 155 UNP Q08210 EXPRESSION TAG SEQADV 3I6R ASP A 156 UNP Q08210 EXPRESSION TAG SEQADV 3I6R PRO A 157 UNP Q08210 EXPRESSION TAG SEQADV 3I6R A UNP Q08210 SER 384 DELETION SEQADV 3I6R A UNP Q08210 THR 385 DELETION SEQADV 3I6R A UNP Q08210 TYR 386 DELETION SEQADV 3I6R A UNP Q08210 ASN 387 DELETION SEQADV 3I6R A UNP Q08210 GLU 388 DELETION SEQADV 3I6R A UNP Q08210 ASP 389 DELETION SEQADV 3I6R A UNP Q08210 ASN 390 DELETION SEQADV 3I6R A UNP Q08210 LYS 391 DELETION SEQADV 3I6R A UNP Q08210 ILE 392 DELETION SEQADV 3I6R A UNP Q08210 VAL 393 DELETION SEQADV 3I6R A UNP Q08210 GLU 394 DELETION SEQADV 3I6R A UNP Q08210 LYS 395 DELETION SEQADV 3I6R A UNP Q08210 LYS 396 DELETION SEQADV 3I6R A UNP Q08210 ASN 397 DELETION SEQADV 3I6R A UNP Q08210 ASN 398 DELETION SEQADV 3I6R A UNP Q08210 PHE 399 DELETION SEQADV 3I6R A UNP Q08210 ASN 400 DELETION SEQADV 3I6R A UNP Q08210 LYS 401 DELETION SEQADV 3I6R A UNP Q08210 ASN 402 DELETION SEQADV 3I6R A UNP Q08210 ASN 403 DELETION SEQADV 3I6R A UNP Q08210 SER 404 DELETION SEQADV 3I6R A UNP Q08210 HIS 405 DELETION SEQADV 3I6R A UNP Q08210 MET 406 DELETION SEQADV 3I6R A UNP Q08210 MET 407 DELETION SEQADV 3I6R A UNP Q08210 LYS 408 DELETION SEQADV 3I6R A UNP Q08210 ASP 409 DELETION SEQADV 3I6R A UNP Q08210 ALA 410 DELETION SEQADV 3I6R A UNP Q08210 LYS 411 DELETION SEQADV 3I6R A UNP Q08210 ASP 412 DELETION SEQADV 3I6R A UNP Q08210 ASN 413 DELETION
SEQRES 1 A 415 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 A 415 LEU VAL PRO ARG GLY SER HIS MET ALA SER MET THR GLY SEQRES 3 A 415 GLY GLN GLN GLY ARG ASP PRO PHE GLU SER TYR ASN PRO SEQRES 4 A 415 GLU PHE PHE LEU TYR ASP ILE PHE LEU LYS PHE CYS LEU SEQRES 5 A 415 LYS TYR ILE ASP GLY GLU ILE CYS HIS ASP LEU PHE LEU SEQRES 6 A 415 LEU LEU GLY LYS TYR ASN ILE LEU PRO TYR ASP THR SER SEQRES 7 A 415 ASN ASP SER ILE TYR ALA CYS THR ASN ILE LYS HIS LEU SEQRES 8 A 415 ASP PHE ILE ASN PRO PHE GLY VAL ALA ALA GLY PHE ASP SEQRES 9 A 415 LYS ASN GLY VAL CYS ILE ASP SER ILE LEU LYS LEU GLY SEQRES 10 A 415 PHE SER PHE ILE GLU ILE GLY THR ILE THR PRO ARG GLY SEQRES 11 A 415 GLN THR GLY ASN ALA LYS PRO ARG ILE PHE ARG ASP VAL SEQRES 12 A 415 GLU SER ARG SER ILE ILE ASN SER CYS GLY PHE ASN ASN SEQRES 13 A 415 MET GLY CYS ASP LYS VAL THR GLU ASN LEU ILE LEU PHE SEQRES 14 A 415 ARG LYS ARG GLN GLU GLU ASP LYS LEU LEU SER LYS HIS SEQRES 15 A 415 ILE VAL GLY VAL SER ILE GLY LYS ASN LYS ASP THR VAL SEQRES 16 A 415 ASN ILE VAL ASP ASP LEU LYS TYR CYS ILE ASN LYS ILE SEQRES 17 A 415 GLY ARG TYR ALA ASP TYR ILE ALA ILE ASN VAL SER SER SEQRES 18 A 415 PRO ASN THR PRO GLY LEU ARG ASP ASN GLN GLU ALA GLY SEQRES 19 A 415 LYS LEU LYS ASN ILE ILE LEU SER VAL LYS GLU GLU ILE SEQRES 20 A 415 ASP ASN LEU GLU LYS ASN ASN ILE MET ASN ASP GLU PHE SEQRES 21 A 415 LEU TRP PHE ASN THR THR LYS LYS LYS PRO LEU VAL PHE SEQRES 22 A 415 VAL LYS LEU ALA PRO ASP LEU ASN GLN GLU GLN LYS LYS SEQRES 23 A 415 GLU ILE ALA ASP VAL LEU LEU GLU THR ASN ILE ASP GLY SEQRES 24 A 415 MET ILE ILE SER ASN THR THR THR GLN ILE ASN ASP ILE SEQRES 25 A 415 LYS SER PHE GLU ASN LYS LYS GLY GLY VAL SER GLY ALA SEQRES 26 A 415 LYS LEU LYS ASP ILE SER THR LYS PHE ILE CYS GLU MET SEQRES 27 A 415 TYR ASN TYR THR ASN LYS GLN ILE PRO ILE ILE ALA SER SEQRES 28 A 415 GLY GLY ILE PHE SER GLY LEU ASP ALA LEU GLU LYS ILE SEQRES 29 A 415 GLU ALA GLY ALA SER VAL CYS GLN LEU TYR SER CYS LEU SEQRES 30 A 415 VAL PHE ASN GLY MET LYS SER ALA VAL GLN ILE LYS ARG SEQRES 31 A 415 GLU LEU ASN HIS LEU LEU TYR GLN ARG GLY TYR TYR ASN SEQRES 32 A 415 LEU LYS GLU ALA ILE GLY ARG LYS HIS SER LYS SER
HET J5Z A1001 21 HET FMN A1002 31 HET ORO A1003 11
HETNAM J5Z 5-METHYL-N-[4-(TRIFLUOROMETHYL)PHENYL][1,2, HETNAM 2 J5Z 4]TRIAZOLO[1,5-A]PYRIMIDIN-7-AMINE HETNAM FMN FLAVIN MONONUCLEOTIDE HETNAM ORO OROTIC ACID
HETSYN FMN RIBOFLAVIN MONOPHOSPHATE
FORMUL 2 J5Z C13 H10 F3 N5 FORMUL 3 FMN C17 H21 N4 O9 P FORMUL 4 ORO C5 H4 N2 O4 FORMUL 5 HOH *39(H2 O)
HELIX 1 1 ASN A 162 ILE A 179 1 18 HELIX 2 2 ASP A 180 TYR A 194 1 15 HELIX 3 3 SER A 205 CYS A 209 5 5 HELIX 4 4 CYS A 233 LYS A 239 1 7 HELIX 5 5 GLY A 282 GLU A 298 1 17 HELIX 6 6 GLU A 299 SER A 304 5 6 HELIX 7 7 ASN A 320 GLY A 333 1 14 HELIX 8 8 ARG A 334 ALA A 336 5 3 HELIX 9 9 GLU A 356 ASN A 378 1 23 HELIX 10 10 ASN A 381 LEU A 415 5 5 HELIX 11 11 ASN A 435 ASN A 450 1 16 HELIX 12 12 ILE A 466 GLU A 470 5 5 HELIX 13 13 ALA A 479 THR A 496 1 18 HELIX 14 14 SER A 510 GLY A 521 1 12 HELIX 15 15 TYR A 528 GLY A 535 1 8 HELIX 16 16 LYS A 537 ARG A 553 1 17 HELIX 17 17 ASN A 557 ALA A 561 5 5
SHEET 1 A 2 THR A 210 ILE A 212 0 SHEET 2 A 2 LEU A 215 PHE A 217 -1 O PHE A 217 N THR A 210 SHEET 1 B 9 PHE A 221 VAL A 223 0 SHEET 2 B 9 PHE A 244 ILE A 250 1 O GLU A 246 N VAL A 223 SHEET 3 B 9 ILE A 307 ILE A 312 1 O SER A 311 N ILE A 247 SHEET 4 B 9 TYR A 338 ASN A 342 1 O ALA A 340 N VAL A 310 SHEET 5 B 9 LEU A 425 LEU A 430 1 O PHE A 427 N ILE A 339 SHEET 6 B 9 GLY A 453 ILE A 456 1 O ILE A 455 N VAL A 428 SHEET 7 B 9 ILE A 502 ALA A 504 1 O ILE A 503 N MET A 454 SHEET 8 B 9 VAL A 524 LEU A 527 1 O VAL A 524 N ALA A 504 SHEET 9 B 9 PHE A 221 VAL A 223 1 N GLY A 222 O LEU A 527 SHEET 1 C 3 ILE A 263 ASP A 266 0 SHEET 2 C 3 SER A 271 ASN A 274 -1 O ILE A 273 N PHE A 264 SHEET 3 C 3 GLY A 475 GLY A 478 -1 O SER A 477 N ILE A 272
CISPEP 1 GLY A 248 THR A 249 0 8.72 CISPEP 2 LYS A 260 PRO A 261 0 2.97 CISPEP 3 PRO A 349 GLY A 350 0 -9.23 CISPEP 4 ILE A 456 SER A 457 0 1.31 CISPEP 5 SER A 505 GLY A 506 0 6.20
SITE 1 AC1 10 GLY A 181 CYS A 184 HIS A 185 PHE A 188 SITE 2 AC1 10 PHE A 227 LEU A 240 ARG A 265 LEU A 531 SITE 3 AC1 10 VAL A 532 MET A 536 SITE 1 AC2 21 HOH A 10 HOH A 11 HOH A 22 ALA A 224 SITE 2 AC2 21 ALA A 225 GLY A 226 LYS A 229 THR A 249 SITE 3 AC2 21 ASN A 274 ASN A 342 LYS A 429 SER A 457 SITE 4 AC2 21 ASN A 458 SER A 477 GLY A 478 SER A 505 SITE 5 AC2 21 GLY A 506 GLY A 507 TYR A 528 SER A 529 SITE 6 AC2 21 ORO A1003 SITE 1 AC3 11 LYS A 229 ASN A 274 CYS A 276 GLY A 277 SITE 2 AC3 11 PHE A 278 ASN A 342 SER A 345 ASN A 347 SITE 3 AC3 11 ASN A 458 THR A 459 FMN A1002
CRYST1 85.442 85.442 138.554 90.00 90.00 120.00 P 64 6
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 0.011704 0.006757 0.000000 0.00000
SCALE2 0.000000 0.013514 0.000000 0.00000
SCALE3 0.000000 0.000000 0.007217 0.00000