10 20 30 40 50 60 70 80 3HY9 - Header ----|----|----|----|----|----|----|----|----|----|----|----|----|----|----|----| Asymmetric UnitHEADER HYDROLASE 22-JUN-09 3HY9
TITLE CRYSTAL STRUCTURE OF THE CATALYTIC DOMAIN OF ADAMTS-5 IN TITLE 2 COMPLEX WITH AN AMINO-2-INDANOL COMPOUND
COMPND MOL_ID: 1; COMPND 2 MOLECULE: CATALYTIC DOMAIN OF ADAMTS-5; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: CATALYTIC DOMAIN (UNP RESIDUES 262 TO 480); COMPND 5 EC: 3.4.24.-; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES
SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_TAXID: 9606; SOURCE 4 GENE: ADAMTS-5; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: MON208; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PPHA79257
KEYWDS ALPHA/BETA STRUCTURE, CENTRAL FIVE STRANDED BETA-SHEET, KEYWDS 2 HYDROLASE
EXPDTA X-RAY DIFFRACTION
AUTHOR H.-S.SHIEH,J.M.WILLIAMS,N.CASPERS,K.J.MATHIS,M.D.TORTORELLA, AUTHOR 2 A.TOMASSELLI
REVDAT 2 15-SEP-09 3HY9 1 JRNL REVDAT 1 07-JUL-09 3HY9 0
JRNL AUTH M.D.TORTORELLA,A.G.TOMASSELLI,K.J.MATHIS, JRNL AUTH 2 M.E.SCHNUTE,S.S.WOODARD,G.MUNIE,J.M.WILLIAMS, JRNL AUTH 3 N.CASPERS,A.J.WITTWER,A.M.MALFAIT,H.S.SHIEH JRNL TITL STRUCTURAL AND INHIBITION ANALYSIS REVEALS THE JRNL TITL 2 MECHANISM OF SELECTIVITY OF A SERIES OF AGGRECANASE JRNL TITL 3 INHIBITORS JRNL REF J.BIOL.CHEM. V. 284 24185 2009 JRNL REFN ISSN 0021-9258 JRNL PMID 19586907 JRNL DOI 10.1074/JBC.M109.029116
REMARK 1
REMARK 2 REMARK 2 RESOLUTION. 2.02 ANGSTROMS.
REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.02 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 31.02 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 22235 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.163 REMARK 3 R VALUE (WORKING SET) : 0.159 REMARK 3 FREE R VALUE : 0.238 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1205 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.02 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.07 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1561 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 97.14 REMARK 3 BIN R VALUE (WORKING SET) : 0.1490 REMARK 3 BIN FREE R VALUE SET COUNT : 69 REMARK 3 BIN FREE R VALUE : 0.2810 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3350 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 72 REMARK 3 SOLVENT ATOMS : 487 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 19.20 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 20.50 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.62000 REMARK 3 B22 (A**2) : -1.33000 REMARK 3 B33 (A**2) : -0.28000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.16000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.252 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.205 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.127 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 4.396 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.954 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.900 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3488 ; 0.010 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4732 ; 1.354 ; 1.962 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 435 ; 5.865 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 156 ;34.693 ;24.103 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 575 ;15.648 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 20 ;19.154 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 541 ; 0.087 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2668 ; 0.004 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1770 ; 0.207 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 2351 ; 0.298 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 370 ; 0.158 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): 27 ; 0.105 ; 0.200 REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 137 ; 0.212 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 88 ; 0.189 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2211 ; 0.772 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3454 ; 1.349 ; 2.000 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1400 ; 1.882 ; 3.000 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1272 ; 2.939 ; 4.500 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE REMARK 3 RIDING POSITIONS
REMARK 4 REMARK 4 3HY9 COMPLIES WITH FORMAT V. 3.20, 01-DEC-08
REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 24-JUN-09. REMARK 100 THE RCSB ID CODE IS RCSB053730.
REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 11-APR-07 REMARK 200 TEMPERATURE (KELVIN) : 110 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 17-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MAR CCD 165 MM REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 23451 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.020 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 3.600 REMARK 200 R MERGE (I) : 0.04400 REMARK 200 R SYM (I) : 0.04400 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 29.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.02 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.09 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.2 REMARK 200 DATA REDUNDANCY IN SHELL : 2.10 REMARK 200 R MERGE FOR SHELL (I) : 0.09800 REMARK 200 R SYM FOR SHELL (I) : 0.09800 REMARK 200 <I/SIGMA(I)> FOR SHELL : 7.800 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: FOURIER SYNTHESIS REMARK 200 SOFTWARE USED: FOURIER REMARK 200 STARTING MODEL: PDB ENTRY 3B8Z REMARK 200 REMARK 200 REMARK: NULL
REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 32.85 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.83 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 25% PEG 3350, 200 MM AMMONIUM REMARK 280 ACETATE, 100 MM TRIS PH 8.5, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 298.0K
REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 22.22200 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL
REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA.
REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000
REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 260 REMARK 465 ALA A 261 REMARK 465 SER A 262 REMARK 465 ILE A 263 REMARK 465 MET B 260
REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS(M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ASP A 323 CG OD1 OD2 REMARK 470 LYS A 324 CG CD CE NZ REMARK 470 ASP A 325 CG OD1 OD2 REMARK 470 LYS A 326 CG CD CE NZ REMARK 470 SER B 262 OG REMARK 470 ILE B 263 CG1 CG2 CD1 REMARK 470 SER B 264 OG REMARK 470 ASP B 323 CG OD1 OD2 REMARK 470 LYS B 324 CG CD CE NZ REMARK 470 ASP B 325 CG OD1 OD2 REMARK 470 LYS B 326 CG CD CE NZ
REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH B 6054 O HOH B 6138 2.13 REMARK 500 O ASP B 325 N SER B 327 2.19 REMARK 500 O HOH A 5011 O HOH A 5242 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 324 98.05 -52.06 REMARK 500 ASP A 325 -22.59 61.92 REMARK 500 LYS A 326 51.04 79.75 REMARK 500 SER A 327 -67.98 -12.20 REMARK 500 THR A 444 -76.74 -108.93 REMARK 500 LYS A 450 76.63 -157.57 REMARK 500 SER B 262 81.90 -43.54 REMARK 500 ASP B 323 145.89 49.21 REMARK 500 ASP B 325 11.19 91.70 REMARK 500 LYS B 326 -5.10 41.78 REMARK 500 SER B 327 -38.56 84.08 REMARK 500 LEU B 402 -58.72 -123.68 REMARK 500 THR B 444 -84.13 -102.59 REMARK 500 LYS B 450 79.76 -161.10 REMARK 500 REMARK 500 REMARK: NULL
REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 902 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 270 OE1 REMARK 620 2 ASP A 353 OD1 66.7 REMARK 620 3 ASP A 353 OD2 114.1 47.9 REMARK 620 4 ASP A 360 OD1 97.1 85.8 86.3 REMARK 620 5 ASP A 360 OD2 83.4 125.5 138.0 52.7 REMARK 620 6 CYS A 471 O 172.4 120.1 73.1 80.6 89.4 REMARK 620 7 ASP A 474 OD1 97.7 86.9 74.5 159.4 143.6 86.4 REMARK 620 8 HOH A5001 O 86.0 138.6 137.6 129.8 78.2 89.9 65.7 REMARK 620 N 1 2 3 4 5 6 7 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 903 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 270 OE1 REMARK 620 2 GLU A 270 OE2 52.7 REMARK 620 3 ASP A 353 O 145.7 157.4 REMARK 620 4 ASP A 353 OD1 70.9 123.7 76.4 REMARK 620 5 ASP A 474 OD2 97.4 103.0 88.8 82.9 REMARK 620 6 HOH A5026 O 126.1 75.2 88.2 157.4 80.3 REMARK 620 7 HOH A5033 O 89.7 79.0 86.9 102.2 172.3 93.2 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 904 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 369 OD1 REMARK 620 2 LEU A 370 O 94.7 REMARK 620 3 CYS A 376 O 88.0 88.4 REMARK 620 4 THR A 378 O 173.2 87.9 98.3 REMARK 620 5 GLU A 398 OE1 93.0 109.0 162.5 80.3 REMARK 620 6 HOH A5029 O 80.2 167.4 80.0 98.5 82.9 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 901 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 410 NE2 REMARK 620 2 HIS A 414 NE2 99.6 REMARK 620 3 HIS A 420 NE2 107.2 96.0 REMARK 620 4 098 A 801 O4 109.8 149.6 82.5 REMARK 620 5 098 A 801 O1 103.8 86.3 148.0 79.9 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B 902 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU B 270 OE1 REMARK 620 2 ASP B 353 OD1 69.1 REMARK 620 3 ASP B 353 OD2 117.9 49.0 REMARK 620 4 ASP B 360 OD1 92.2 91.1 85.5 REMARK 620 5 ASP B 360 OD2 77.6 129.3 136.8 52.4 REMARK 620 6 CYS B 471 O 166.6 122.8 73.9 82.1 89.4 REMARK 620 7 ASP B 474 OD1 111.7 89.9 76.3 154.7 138.7 76.2 REMARK 620 8 HOH B6012 O 83.3 136.9 145.0 123.4 71.7 89.7 69.8 REMARK 620 N 1 2 3 4 5 6 7 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B 903 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU B 270 OE1 REMARK 620 2 GLU B 270 OE2 49.7 REMARK 620 3 ASP B 353 O 137.5 160.6 REMARK 620 4 ASP B 353 OD1 67.2 116.7 75.5 REMARK 620 5 ASP B 474 OD2 86.6 90.5 106.9 80.2 REMARK 620 6 HOH B6097 O 85.1 78.1 84.4 103.6 168.6 REMARK 620 7 HOH B6180 O 135.0 85.6 86.2 155.3 89.6 90.8 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B 904 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 369 OD1 REMARK 620 2 LEU B 370 O 92.3 REMARK 620 3 CYS B 376 O 85.8 82.4 REMARK 620 4 THR B 378 O 175.7 90.6 97.7 REMARK 620 5 GLU B 398 OE2 93.1 113.0 164.6 82.9 REMARK 620 6 HOH B6003 O 80.3 160.0 78.6 98.0 86.1 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 901 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 410 NE2 REMARK 620 2 HIS B 414 NE2 101.0 REMARK 620 3 HIS B 420 NE2 107.7 92.4 REMARK 620 4 098 B 801 O4 97.7 161.0 85.2 REMARK 620 5 098 B 801 O1 110.7 92.7 139.4 77.3 REMARK 620 N 1 2 3 4
REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 901 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 902 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 903 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 904 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 098 A 801 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN B 901 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA B 902 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA B 903 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA B 904 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 098 B 801
REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3B8Z RELATED DB: PDB REMARK 900 THE SAME PROTEIN COMPLEXED WITH DIFFERENT INHIBITOR. REMARK 900 RELATED ID: 3HY7 RELATED DB: PDB REMARK 900 THE SAME PROTEIN COMPLEXED WITH DIFFERENT INHIBITOR. REMARK 900 RELATED ID: 3HYG RELATED DB: PDB REMARK 900 THE SAME PROTEIN COMPLEXED WITH DIFFERENT INHIBITOR.
DBREF 3HY9 A 262 480 UNP Q9UNA0 ATS5_HUMAN 262 480 DBREF 3HY9 B 262 480 UNP Q9UNA0 ATS5_HUMAN 262 480
SEQADV 3HY9 MET A 260 UNP Q9UNA0 EXPRESSION TAG SEQADV 3HY9 ALA A 261 UNP Q9UNA0 EXPRESSION TAG SEQADV 3HY9 LYS A 282 UNP Q9UNA0 LEU 282 ENGINEERED SEQADV 3HY9 MET B 260 UNP Q9UNA0 EXPRESSION TAG SEQADV 3HY9 ALA B 261 UNP Q9UNA0 EXPRESSION TAG SEQADV 3HY9 LYS B 282 UNP Q9UNA0 LEU 282 ENGINEERED
SEQRES 1 A 221 MET ALA SER ILE SER ARG ALA ARG GLN VAL GLU LEU LEU SEQRES 2 A 221 LEU VAL ALA ASP ALA SER MET ALA ARG LYS TYR GLY ARG SEQRES 3 A 221 GLY LEU GLN HIS TYR LEU LEU THR LEU ALA SER ILE ALA SEQRES 4 A 221 ASN ARG LEU TYR SER HIS ALA SER ILE GLU ASN HIS ILE SEQRES 5 A 221 ARG LEU ALA VAL VAL LYS VAL VAL VAL LEU GLY ASP LYS SEQRES 6 A 221 ASP LYS SER LEU GLU VAL SER LYS ASN ALA ALA THR THR SEQRES 7 A 221 LEU LYS ASN PHE CYS LYS TRP GLN HIS GLN HIS ASN GLN SEQRES 8 A 221 LEU GLY ASP ASP HIS GLU GLU HIS TYR ASP ALA ALA ILE SEQRES 9 A 221 LEU PHE THR ARG GLU ASP LEU CYS GLY HIS HIS SER CYS SEQRES 10 A 221 ASP THR LEU GLY MET ALA ASP VAL GLY THR ILE CYS SER SEQRES 11 A 221 PRO GLU ARG SER CYS ALA VAL ILE GLU ASP ASP GLY LEU SEQRES 12 A 221 HIS ALA ALA PHE THR VAL ALA HIS GLU ILE GLY HIS LEU SEQRES 13 A 221 LEU GLY LEU SER HIS ASP ASP SER LYS PHE CYS GLU GLU SEQRES 14 A 221 THR PHE GLY SER THR GLU ASP LYS ARG LEU MET SER SER SEQRES 15 A 221 ILE LEU THR SER ILE ASP ALA SER LYS PRO TRP SER LYS SEQRES 16 A 221 CYS THR SER ALA THR ILE THR GLU PHE LEU ASP ASP GLY SEQRES 17 A 221 HIS GLY ASN CYS LEU LEU ASP LEU PRO ARG LYS GLN ILE SEQRES 1 B 221 MET ALA SER ILE SER ARG ALA ARG GLN VAL GLU LEU LEU SEQRES 2 B 221 LEU VAL ALA ASP ALA SER MET ALA ARG LYS TYR GLY ARG SEQRES 3 B 221 GLY LEU GLN HIS TYR LEU LEU THR LEU ALA SER ILE ALA SEQRES 4 B 221 ASN ARG LEU TYR SER HIS ALA SER ILE GLU ASN HIS ILE SEQRES 5 B 221 ARG LEU ALA VAL VAL LYS VAL VAL VAL LEU GLY ASP LYS SEQRES 6 B 221 ASP LYS SER LEU GLU VAL SER LYS ASN ALA ALA THR THR SEQRES 7 B 221 LEU LYS ASN PHE CYS LYS TRP GLN HIS GLN HIS ASN GLN SEQRES 8 B 221 LEU GLY ASP ASP HIS GLU GLU HIS TYR ASP ALA ALA ILE SEQRES 9 B 221 LEU PHE THR ARG GLU ASP LEU CYS GLY HIS HIS SER CYS SEQRES 10 B 221 ASP THR LEU GLY MET ALA ASP VAL GLY THR ILE CYS SER SEQRES 11 B 221 PRO GLU ARG SER CYS ALA VAL ILE GLU ASP ASP GLY LEU SEQRES 12 B 221 HIS ALA ALA PHE THR VAL ALA HIS GLU ILE GLY HIS LEU SEQRES 13 B 221 LEU GLY LEU SER HIS ASP ASP SER LYS PHE CYS GLU GLU SEQRES 14 B 221 THR PHE GLY SER THR GLU ASP LYS ARG LEU MET SER SER SEQRES 15 B 221 ILE LEU THR SER ILE ASP ALA SER LYS PRO TRP SER LYS SEQRES 16 B 221 CYS THR SER ALA THR ILE THR GLU PHE LEU ASP ASP GLY SEQRES 17 B 221 HIS GLY ASN CYS LEU LEU ASP LEU PRO ARG LYS GLN ILE
HET ZN A 901 1 HET CA A 902 1 HET CA A 903 1 HET CA A 904 1 HET 098 A 801 32 HET ZN B 901 1 HET CA B 902 1 HET CA B 903 1 HET CA B 904 1 HET 098 B 801 32
HETNAM ZN ZINC ION HETNAM CA CALCIUM ION HETNAM 098 (3R)-N~2~-(CYCLOPROPYLMETHYL)-N~1~-HYDROXY-3-(3- HETNAM 2 098 HYDROXYBENZYL)-N~4~-[(1S,2R)-2-HYDROXY-2,3-DIHYDRO-1H- HETNAM 3 098 INDEN-1-YL]-L-ASPARTAMIDE
FORMUL 3 ZN 2(ZN 2+) FORMUL 4 CA 6(CA 2+) FORMUL 7 098 2(C24 H29 N3 O5) FORMUL 13 HOH *487(H2 O)
HELIX 1 1 ASP A 276 GLY A 284 1 9 HELIX 2 2 GLY A 286 SER A 303 1 18 HELIX 3 3 HIS A 304 GLU A 308 5 5 HELIX 4 4 ASN A 333 ASN A 349 1 17 HELIX 5 5 SER A 389 ARG A 392 5 4 HELIX 6 6 HIS A 403 LEU A 416 1 14 HELIX 7 7 SER A 423 GLY A 431 1 9 HELIX 8 8 SER A 453 ASP A 466 1 14 HELIX 9 9 GLY A 469 LEU A 473 5 5 HELIX 10 10 ASP B 276 GLY B 284 1 9 HELIX 11 11 GLY B 286 SER B 303 1 18 HELIX 12 12 HIS B 304 GLU B 308 5 5 HELIX 13 13 ASN B 333 ASN B 349 1 17 HELIX 14 14 SER B 389 ARG B 392 5 4 HELIX 15 15 HIS B 403 LEU B 416 1 14 HELIX 16 16 SER B 423 GLY B 431 1 9 HELIX 17 17 SER B 453 ASP B 466 1 14 HELIX 18 18 GLY B 469 LEU B 473 5 5
SHEET 1 A 5 ILE A 311 VAL A 320 0 SHEET 2 A 5 ARG A 267 ALA A 275 1 N LEU A 271 O ALA A 314 SHEET 3 A 5 ALA A 361 THR A 366 1 O ILE A 363 N VAL A 274 SHEET 4 A 5 CYS A 394 GLU A 398 1 O ALA A 395 N LEU A 364 SHEET 5 A 5 GLY A 380 ALA A 382 -1 N MET A 381 O VAL A 396 SHEET 1 B 5 ILE B 311 VAL B 320 0 SHEET 2 B 5 ARG B 267 ALA B 275 1 N LEU B 271 O ALA B 314 SHEET 3 B 5 ALA B 361 THR B 366 1 O ILE B 363 N VAL B 274 SHEET 4 B 5 CYS B 394 GLU B 398 1 O ALA B 395 N LEU B 364 SHEET 5 B 5 GLY B 380 ALA B 382 -1 N MET B 381 O VAL B 396
SSBOND 1 CYS A 342 CYS A 394 1555 1555 2.01 SSBOND 2 CYS A 371 CYS A 376 1555 1555 2.05 SSBOND 3 CYS A 388 CYS A 471 1555 1555 2.03 SSBOND 4 CYS A 426 CYS A 455 1555 1555 2.03 SSBOND 5 CYS B 342 CYS B 394 1555 1555 1.99 SSBOND 6 CYS B 371 CYS B 376 1555 1555 2.03 SSBOND 7 CYS B 388 CYS B 471 1555 1555 2.05 SSBOND 8 CYS B 426 CYS B 455 1555 1555 2.04
LINK OE1 GLU A 270 CA CA A 902 1555 1555 2.38 LINK OE1 GLU A 270 CA CA A 903 1555 1555 2.41 LINK OE2 GLU A 270 CA CA A 903 1555 1555 2.47 LINK O ASP A 353 CA CA A 903 1555 1555 2.34 LINK OD1 ASP A 353 CA CA A 902 1555 1555 2.75 LINK OD1 ASP A 353 CA CA A 903 1555 1555 2.47 LINK OD2 ASP A 353 CA CA A 902 1555 1555 2.60 LINK OD1 ASP A 360 CA CA A 902 1555 1555 2.43 LINK OD2 ASP A 360 CA CA A 902 1555 1555 2.47 LINK OD1 ASP A 369 CA CA A 904 1555 1555 2.37 LINK O LEU A 370 CA CA A 904 1555 1555 2.31 LINK O CYS A 376 CA CA A 904 1555 1555 2.29 LINK O THR A 378 CA CA A 904 1555 1555 2.35 LINK OE1 GLU A 398 CA CA A 904 1555 1555 2.35 LINK NE2 HIS A 410 ZN ZN A 901 1555 1555 2.04 LINK NE2 HIS A 414 ZN ZN A 901 1555 1555 2.11 LINK NE2 HIS A 420 ZN ZN A 901 1555 1555 2.12 LINK O CYS A 471 CA CA A 902 1555 1555 2.34 LINK OD1 ASP A 474 CA CA A 902 1555 1555 2.40 LINK OD2 ASP A 474 CA CA A 903 1555 1555 2.24 LINK OE1 GLU B 270 CA CA B 902 1555 1555 2.49 LINK OE1 GLU B 270 CA CA B 903 1555 1555 2.67 LINK OE2 GLU B 270 CA CA B 903 1555 1555 2.53 LINK O ASP B 353 CA CA B 903 1555 1555 2.31 LINK OD1 ASP B 353 CA CA B 902 1555 1555 2.59 LINK OD1 ASP B 353 CA CA B 903 1555 1555 2.53 LINK OD2 ASP B 353 CA CA B 902 1555 1555 2.66 LINK OD1 ASP B 360 CA CA B 902 1555 1555 2.46 LINK OD2 ASP B 360 CA CA B 902 1555 1555 2.57 LINK OD1 ASP B 369 CA CA B 904 1555 1555 2.24 LINK O LEU B 370 CA CA B 904 1555 1555 2.37 LINK O CYS B 376 CA CA B 904 1555 1555 2.24 LINK O THR B 378 CA CA B 904 1555 1555 2.35 LINK OE2 GLU B 398 CA CA B 904 1555 1555 2.38 LINK NE2 HIS B 410 ZN ZN B 901 1555 1555 2.13 LINK NE2 HIS B 414 ZN ZN B 901 1555 1555 2.10 LINK NE2 HIS B 420 ZN ZN B 901 1555 1555 2.12 LINK O CYS B 471 CA CA B 902 1555 1555 2.35 LINK OD1 ASP B 474 CA CA B 902 1555 1555 2.59 LINK OD2 ASP B 474 CA CA B 903 1555 1555 2.33 LINK ZN ZN A 901 O4 098 A 801 1555 1555 1.96 LINK ZN ZN A 901 O1 098 A 801 1555 1555 2.11 LINK ZN ZN B 901 O4 098 B 801 1555 1555 1.91 LINK ZN ZN B 901 O1 098 B 801 1555 1555 2.26 LINK CA CA A 902 O HOH A5001 1555 1555 2.43 LINK CA CA A 903 O HOH A5026 1555 1555 2.42 LINK CA CA A 903 O HOH A5033 1555 1555 2.28 LINK CA CA A 904 O HOH A5029 1555 1555 2.18 LINK CA CA B 902 O HOH B6012 1555 1555 2.45 LINK CA CA B 903 O HOH B6097 1555 1555 2.41 LINK CA CA B 903 O HOH B6180 1555 1555 2.31 LINK CA CA B 904 O HOH B6003 1555 1555 2.43
SITE 1 AC1 4 HIS A 410 HIS A 414 HIS A 420 098 A 801 SITE 1 AC2 6 GLU A 270 ASP A 353 ASP A 360 CYS A 471 SITE 2 AC2 6 ASP A 474 HOH A5001 SITE 1 AC3 5 GLU A 270 ASP A 353 ASP A 474 HOH A5026 SITE 2 AC3 5 HOH A5033 SITE 1 AC4 6 ASP A 369 LEU A 370 CYS A 376 THR A 378 SITE 2 AC4 6 GLU A 398 HOH A5029 SITE 1 AC5 20 HIS A 373 ASP A 377 THR A 378 LEU A 379 SITE 2 AC5 20 GLY A 380 THR A 407 HIS A 410 GLU A 411 SITE 3 AC5 20 HIS A 414 HIS A 420 LEU A 438 SER A 440 SITE 4 AC5 20 SER A 441 ILE A 442 LEU A 443 ZN A 901 SITE 5 AC5 20 HOH A5013 HOH A5037 HOH A5102 HOH A5190 SITE 1 AC6 4 HIS B 410 HIS B 414 HIS B 420 098 B 801 SITE 1 AC7 6 GLU B 270 ASP B 353 ASP B 360 CYS B 471 SITE 2 AC7 6 ASP B 474 HOH B6012 SITE 1 AC8 5 GLU B 270 ASP B 353 ASP B 474 HOH B6097 SITE 2 AC8 5 HOH B6180 SITE 1 AC9 6 ASP B 369 LEU B 370 CYS B 376 THR B 378 SITE 2 AC9 6 GLU B 398 HOH B6003 SITE 1 BC1 18 ASP B 377 THR B 378 LEU B 379 GLY B 380 SITE 2 BC1 18 THR B 407 HIS B 410 GLU B 411 HIS B 414 SITE 3 BC1 18 HIS B 420 LEU B 438 SER B 440 SER B 441 SITE 4 BC1 18 ILE B 442 LEU B 443 ZN B 901 HOH B6021 SITE 5 BC1 18 HOH B6063 HOH B6081
CRYST1 52.692 44.444 76.458 90.00 90.19 90.00 P 1 21 1 4
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 0.018978 0.000000 0.000062 0.00000
SCALE2 0.000000 0.022500 0.000000 0.00000
SCALE3 0.000000 0.000000 0.013079 0.00000