10 20 30 40 50 60 70 80 3HSB - Header ----|----|----|----|----|----|----|----|----|----|----|----|----|----|----|----| Asymmetric UnitHEADER RNA BINDING PROTEIN/RNA 10-JUN-09 3HSB
TITLE CRYSTAL STRUCTURE OF YMAH (HFQ) FROM BACILLUS SUBTILIS IN COMPLEX WITH TITLE 2 AN RNA APTAMER
COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROTEIN HFQ; COMPND 3 CHAIN: A, B, C, D, E, F; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: RNA (5'-R(*AP*GP*AP*GP*AP*GP*A)-3'); COMPND 7 CHAIN: X; COMPND 8 ENGINEERED: YES
SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BACILLUS SUBTILIS; SOURCE 3 ORGANISM_TAXID: 1423; SOURCE 4 STRAIN: 168; SOURCE 5 GENE: YMAH; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PGEX-6P-1; SOURCE 11 MOL_ID: 2; SOURCE 12 SYNTHETIC: YES; SOURCE 13 OTHER_DETAILS: SEQUENCE OF AN RNA APTAMER FOR PROTEIN HFQ.
KEYWDS SM-LIKE MOTIF, PROTEIN-RNA COMPLEX, RNA-BINDING, STRESS RESPONSE, RNA KEYWDS 2 BINDING PROTEIN-RNA COMPLEX
EXPDTA X-RAY DIFFRACTION
AUTHOR S.BABA,T.SOMEYA,T.KUMASAKA,G.KAWAI,K.NAKAMURA
REVDAT 2 03-OCT-12 3HSB 1 JRNL VERSN REVDAT 1 23-JUN-10 3HSB 0
JRNL AUTH T.SOMEYA,S.BABA,M.FUJIMOTO,G.KAWAI,T.KUMASAKA,K.NAKAMURA JRNL TITL CRYSTAL STRUCTURE OF HFQ FROM BACILLUS SUBTILIS IN COMPLEX JRNL TITL 2 WITH SELEX-DERIVED RNA APTAMER: INSIGHT INTO RNA-BINDING JRNL TITL 3 PROPERTIES OF BACTERIAL HFQ JRNL REF NUCLEIC ACIDS RES. V. 40 1856 2012 JRNL REFN ISSN 0305-1048 JRNL PMID 22053080 JRNL DOI 10.1093/NAR/GKR892
REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH S.BABA,T.SOMEYA,T.KUMASAKA,G.KAWAI,K.NAKAMURA REMARK 1 TITL EXPRESSION, CRYSTALLIZATION AND PRELIMINARY CRYSTALLOGRAPHIC REMARK 1 TITL 2 ANALYSIS OF YMAH (HFQ) FROM BACILLUS SUBTILIS IN COMPLEX REMARK 1 TITL 3 WITH AN RNA APTAMER. REMARK 1 REF TO BE PUBLISHED REMARK 1 REFN
REMARK 2 REMARK 2 RESOLUTION. 2.20 ANGSTROMS.
REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.2 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.20 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 25.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 97.9 REMARK 3 NUMBER OF REFLECTIONS : 23224 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.214 REMARK 3 FREE R VALUE : 0.228 REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : 2310 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : NULL REMARK 3 BIN RESOLUTION RANGE LOW (A) : NULL REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : NULL REMARK 3 BIN FREE R VALUE : NULL REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3327 REMARK 3 NUCLEIC ACID ATOMS : 154 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 138 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 33.35 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.08600 REMARK 3 B22 (A**2) : -1.08600 REMARK 3 B33 (A**2) : 2.17200 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : NULL REMARK 3 BOND ANGLES (DEGREES) : NULL REMARK 3 DIHEDRAL ANGLES (DEGREES) : NULL REMARK 3 IMPROPER ANGLES (DEGREES) : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 1.576 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE (A**2) : 2.523 ; 2.000 REMARK 3 SIDE-CHAIN BOND (A**2) : 2.122 ; 2.000 REMARK 3 SIDE-CHAIN ANGLE (A**2) : 3.230 ; 2.500 REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : NULL REMARK 3 KSOL : NULL REMARK 3 BSOL : 52.75 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : ION.PARAM REMARK 3 PARAMETER FILE 3 : WATER_REP.PARAM REMARK 3 PARAMETER FILE 4 : GOL.PARAM REMARK 3 PARAMETER FILE 5 : DNA-RNA_REP.PARAM REMARK 3 PARAMETER FILE 6 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 TOPOLOGY FILE 2 : NULL REMARK 3 TOPOLOGY FILE 3 : NULL REMARK 3 TOPOLOGY FILE 4 : NULL REMARK 3 TOPOLOGY FILE 5 : NULL REMARK 3 TOPOLOGY FILE 6 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL
REMARK 4 REMARK 4 3HSB COMPLIES WITH FORMAT V. 3.30, 13-JUL-11
REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 15-JUN-09. REMARK 100 THE RCSB ID CODE IS RCSB053523.
REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 05-DEC-08 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SPRING-8 REMARK 200 BEAMLINE : BL38B1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0000 REMARK 200 MONOCHROMATOR : FIXED EXIT SI 111 DOUBLE CRYSTAL REMARK 200 MONOCHROMATOR REMARK 200 OPTICS : TOROIDAL MIRROR REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RIGAKU JUPITER 210 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 23732 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.200 REMARK 200 RESOLUTION RANGE LOW (A) : 25.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.9 REMARK 200 DATA REDUNDANCY : 14.800 REMARK 200 R MERGE (I) : 0.06300 REMARK 200 R SYM (I) : 0.04200 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 38.0200 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.20 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.28 REMARK 200 COMPLETENESS FOR SHELL (%) : 9.7 REMARK 200 DATA REDUNDANCY IN SHELL : 14.90 REMARK 200 R MERGE FOR SHELL (I) : 0.32500 REMARK 200 R SYM FOR SHELL (I) : 0.29100 REMARK 200 <I/SIGMA(I)> FOR SHELL : 7.070 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: PDB ENTRY 1KQ2 REMARK 200 REMARK 200 REMARK: NULL
REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 39.64 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.04 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.015 M COBALT (II) CHLORIDE REMARK 280 HEXAHYDRATE, 0.1 M MES MONOHYDRATE, 1.8 M AMMONIUM SULFATE, 119 REMARK 280 UM RNA, PH 6.5, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K
REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 4 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -Y,X,Z REMARK 290 4555 Y,-X,Z REMARK 290 5555 -X,Y,-Z REMARK 290 6555 X,-Y,-Z REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z REMARK 290 9555 X+1/2,Y+1/2,Z+1/2 REMARK 290 10555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 11555 -Y+1/2,X+1/2,Z+1/2 REMARK 290 12555 Y+1/2,-X+1/2,Z+1/2 REMARK 290 13555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 14555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 15555 Y+1/2,X+1/2,-Z+1/2 REMARK 290 16555 -Y+1/2,-X+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 1.000000 0.000000 0.000000 61.85000 REMARK 290 SMTRY2 9 0.000000 1.000000 0.000000 61.85000 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 59.56550 REMARK 290 SMTRY1 10 -1.000000 0.000000 0.000000 61.85000 REMARK 290 SMTRY2 10 0.000000 -1.000000 0.000000 61.85000 REMARK 290 SMTRY3 10 0.000000 0.000000 1.000000 59.56550 REMARK 290 SMTRY1 11 0.000000 -1.000000 0.000000 61.85000 REMARK 290 SMTRY2 11 1.000000 0.000000 0.000000 61.85000 REMARK 290 SMTRY3 11 0.000000 0.000000 1.000000 59.56550 REMARK 290 SMTRY1 12 0.000000 1.000000 0.000000 61.85000 REMARK 290 SMTRY2 12 -1.000000 0.000000 0.000000 61.85000 REMARK 290 SMTRY3 12 0.000000 0.000000 1.000000 59.56550 REMARK 290 SMTRY1 13 -1.000000 0.000000 0.000000 61.85000 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 61.85000 REMARK 290 SMTRY3 13 0.000000 0.000000 -1.000000 59.56550 REMARK 290 SMTRY1 14 1.000000 0.000000 0.000000 61.85000 REMARK 290 SMTRY2 14 0.000000 -1.000000 0.000000 61.85000 REMARK 290 SMTRY3 14 0.000000 0.000000 -1.000000 59.56550 REMARK 290 SMTRY1 15 0.000000 1.000000 0.000000 61.85000 REMARK 290 SMTRY2 15 1.000000 0.000000 0.000000 61.85000 REMARK 290 SMTRY3 15 0.000000 0.000000 -1.000000 59.56550 REMARK 290 SMTRY1 16 0.000000 -1.000000 0.000000 61.85000 REMARK 290 SMTRY2 16 -1.000000 0.000000 0.000000 61.85000 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 59.56550 REMARK 290 REMARK 290 REMARK: NULL
REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA.
REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: HEPTAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D, E, F, X REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000
REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -4 REMARK 465 PRO A -3 REMARK 465 LEU A -2 REMARK 465 GLY A -1 REMARK 465 SER A 0 REMARK 465 MET A 1 REMARK 465 LYS A 2 REMARK 465 PRO A 3 REMARK 465 ILE A 4 REMARK 465 LEU A 72 REMARK 465 GLU A 73 REMARK 465 GLY B -4 REMARK 465 PRO B -3 REMARK 465 LEU B -2 REMARK 465 GLY B -1 REMARK 465 SER B 0 REMARK 465 MET B 1 REMARK 465 LYS B 2 REMARK 465 PRO B 3 REMARK 465 GLU B 73 REMARK 465 GLY C -4 REMARK 465 PRO C -3 REMARK 465 LEU C -2 REMARK 465 GLY C -1 REMARK 465 SER C 0 REMARK 465 MET C 1 REMARK 465 LYS C 2 REMARK 465 PRO C 3 REMARK 465 ILE C 4 REMARK 465 GLU C 71 REMARK 465 LEU C 72 REMARK 465 GLU C 73 REMARK 465 GLY D -4 REMARK 465 PRO D -3 REMARK 465 LEU D -2 REMARK 465 GLY D -1 REMARK 465 SER D 0 REMARK 465 MET D 1 REMARK 465 LYS D 2 REMARK 465 PRO D 3 REMARK 465 ILE D 4 REMARK 465 LEU D 72 REMARK 465 GLU D 73 REMARK 465 GLY E -4 REMARK 465 PRO E -3 REMARK 465 LEU E -2 REMARK 465 GLY E -1 REMARK 465 SER E 0 REMARK 465 MET E 1 REMARK 465 LYS E 2 REMARK 465 PRO E 3 REMARK 465 ILE E 4 REMARK 465 GLU E 73 REMARK 465 GLY F -4 REMARK 465 PRO F -3 REMARK 465 LEU F -2 REMARK 465 GLY F -1 REMARK 465 SER F 0 REMARK 465 MET F 1 REMARK 465 LYS F 2 REMARK 465 PRO F 3 REMARK 465 ILE F 4 REMARK 465 LEU F 72 REMARK 465 GLU F 73
REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 106 O HOH B 107 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 G X 4 C5 G X 4 N7 0.043 REMARK 500 A X 5 N3 A X 5 C4 0.044 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 15 NE - CZ - NH2 ANGL. DEV. = 3.2 DEGREES REMARK 500 LEU E 31 CA - CB - CG ANGL. DEV. = 14.1 DEGREES REMARK 500 A X 1 C3' - C2' - C1' ANGL. DEV. = -4.3 DEGREES REMARK 500 A X 1 C6 - N1 - C2 ANGL. DEV. = 3.7 DEGREES REMARK 500 A X 1 N1 - C2 - N3 ANGL. DEV. = -3.1 DEGREES REMARK 500 G X 2 C5 - C6 - N1 ANGL. DEV. = 4.1 DEGREES REMARK 500 A X 3 C1' - O4' - C4' ANGL. DEV. = -6.0 DEGREES REMARK 500 A X 3 C6 - N1 - C2 ANGL. DEV. = 4.5 DEGREES REMARK 500 A X 3 C5 - C6 - N1 ANGL. DEV. = -3.3 DEGREES REMARK 500 G X 4 O5' - C5' - C4' ANGL. DEV. = 11.9 DEGREES REMARK 500 G X 4 P - O5' - C5' ANGL. DEV. = -9.8 DEGREES REMARK 500 G X 4 O4' - C1' - C2' ANGL. DEV. = -6.6 DEGREES REMARK 500 G X 4 C4 - C5 - C6 ANGL. DEV. = -3.6 DEGREES REMARK 500 A X 5 C6 - N1 - C2 ANGL. DEV. = 5.7 DEGREES REMARK 500 A X 5 N1 - C2 - N3 ANGL. DEV. = -3.9 DEGREES REMARK 500 G X 4 C3' - O3' - P ANGL. DEV. = 8.4 DEGREES REMARK 500 A X 7 C6 - N1 - C2 ANGL. DEV. = 4.2 DEGREES REMARK 500 A X 7 N1 - C2 - N3 ANGL. DEV. = -3.3 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU B 48 73.13 56.44 REMARK 500 ASN C 18 52.00 30.85 REMARK 500 TYR C 20 86.06 -55.62 REMARK 500 LYS D 16 -6.85 -56.66 REMARK 500 ASP D 39 -159.58 -127.97 REMARK 500 GLU D 48 62.21 39.37 REMARK 500 ASP E 39 -158.47 -130.63 REMARK 500 ASP F 39 -158.16 -141.48 REMARK 500 REMARK 500 REMARK: NULL
DBREF 3HSB A 1 73 UNP O31796 HFQ_BACSU 1 73 DBREF 3HSB B 1 73 UNP O31796 HFQ_BACSU 1 73 DBREF 3HSB C 1 73 UNP O31796 HFQ_BACSU 1 73 DBREF 3HSB D 1 73 UNP O31796 HFQ_BACSU 1 73 DBREF 3HSB E 1 73 UNP O31796 HFQ_BACSU 1 73 DBREF 3HSB F 1 73 UNP O31796 HFQ_BACSU 1 73 DBREF 3HSB X 1 7 PDB 3HSB 3HSB 1 7
SEQADV 3HSB GLY A -4 UNP O31796 EXPRESSION TAG SEQADV 3HSB PRO A -3 UNP O31796 EXPRESSION TAG SEQADV 3HSB LEU A -2 UNP O31796 EXPRESSION TAG SEQADV 3HSB GLY A -1 UNP O31796 EXPRESSION TAG SEQADV 3HSB SER A 0 UNP O31796 EXPRESSION TAG SEQADV 3HSB GLY B -4 UNP O31796 EXPRESSION TAG SEQADV 3HSB PRO B -3 UNP O31796 EXPRESSION TAG SEQADV 3HSB LEU B -2 UNP O31796 EXPRESSION TAG SEQADV 3HSB GLY B -1 UNP O31796 EXPRESSION TAG SEQADV 3HSB SER B 0 UNP O31796 EXPRESSION TAG SEQADV 3HSB GLY C -4 UNP O31796 EXPRESSION TAG SEQADV 3HSB PRO C -3 UNP O31796 EXPRESSION TAG SEQADV 3HSB LEU C -2 UNP O31796 EXPRESSION TAG SEQADV 3HSB GLY C -1 UNP O31796 EXPRESSION TAG SEQADV 3HSB SER C 0 UNP O31796 EXPRESSION TAG SEQADV 3HSB GLY D -4 UNP O31796 EXPRESSION TAG SEQADV 3HSB PRO D -3 UNP O31796 EXPRESSION TAG SEQADV 3HSB LEU D -2 UNP O31796 EXPRESSION TAG SEQADV 3HSB GLY D -1 UNP O31796 EXPRESSION TAG SEQADV 3HSB SER D 0 UNP O31796 EXPRESSION TAG SEQADV 3HSB GLY E -4 UNP O31796 EXPRESSION TAG SEQADV 3HSB PRO E -3 UNP O31796 EXPRESSION TAG SEQADV 3HSB LEU E -2 UNP O31796 EXPRESSION TAG SEQADV 3HSB GLY E -1 UNP O31796 EXPRESSION TAG SEQADV 3HSB SER E 0 UNP O31796 EXPRESSION TAG SEQADV 3HSB GLY F -4 UNP O31796 EXPRESSION TAG SEQADV 3HSB PRO F -3 UNP O31796 EXPRESSION TAG SEQADV 3HSB LEU F -2 UNP O31796 EXPRESSION TAG SEQADV 3HSB GLY F -1 UNP O31796 EXPRESSION TAG SEQADV 3HSB SER F 0 UNP O31796 EXPRESSION TAG
SEQRES 1 A 78 GLY PRO LEU GLY SER MET LYS PRO ILE ASN ILE GLN ASP SEQRES 2 A 78 GLN PHE LEU ASN GLN ILE ARG LYS GLU ASN THR TYR VAL SEQRES 3 A 78 THR VAL PHE LEU LEU ASN GLY PHE GLN LEU ARG GLY GLN SEQRES 4 A 78 VAL LYS GLY PHE ASP ASN PHE THR VAL LEU LEU GLU SER SEQRES 5 A 78 GLU GLY LYS GLN GLN LEU ILE TYR LYS HIS ALA ILE SER SEQRES 6 A 78 THR PHE ALA PRO GLN LYS ASN VAL GLN LEU GLU LEU GLU SEQRES 1 B 78 GLY PRO LEU GLY SER MET LYS PRO ILE ASN ILE GLN ASP SEQRES 2 B 78 GLN PHE LEU ASN GLN ILE ARG LYS GLU ASN THR TYR VAL SEQRES 3 B 78 THR VAL PHE LEU LEU ASN GLY PHE GLN LEU ARG GLY GLN SEQRES 4 B 78 VAL LYS GLY PHE ASP ASN PHE THR VAL LEU LEU GLU SER SEQRES 5 B 78 GLU GLY LYS GLN GLN LEU ILE TYR LYS HIS ALA ILE SER SEQRES 6 B 78 THR PHE ALA PRO GLN LYS ASN VAL GLN LEU GLU LEU GLU SEQRES 1 C 78 GLY PRO LEU GLY SER MET LYS PRO ILE ASN ILE GLN ASP SEQRES 2 C 78 GLN PHE LEU ASN GLN ILE ARG LYS GLU ASN THR TYR VAL SEQRES 3 C 78 THR VAL PHE LEU LEU ASN GLY PHE GLN LEU ARG GLY GLN SEQRES 4 C 78 VAL LYS GLY PHE ASP ASN PHE THR VAL LEU LEU GLU SER SEQRES 5 C 78 GLU GLY LYS GLN GLN LEU ILE TYR LYS HIS ALA ILE SER SEQRES 6 C 78 THR PHE ALA PRO GLN LYS ASN VAL GLN LEU GLU LEU GLU SEQRES 1 D 78 GLY PRO LEU GLY SER MET LYS PRO ILE ASN ILE GLN ASP SEQRES 2 D 78 GLN PHE LEU ASN GLN ILE ARG LYS GLU ASN THR TYR VAL SEQRES 3 D 78 THR VAL PHE LEU LEU ASN GLY PHE GLN LEU ARG GLY GLN SEQRES 4 D 78 VAL LYS GLY PHE ASP ASN PHE THR VAL LEU LEU GLU SER SEQRES 5 D 78 GLU GLY LYS GLN GLN LEU ILE TYR LYS HIS ALA ILE SER SEQRES 6 D 78 THR PHE ALA PRO GLN LYS ASN VAL GLN LEU GLU LEU GLU SEQRES 1 E 78 GLY PRO LEU GLY SER MET LYS PRO ILE ASN ILE GLN ASP SEQRES 2 E 78 GLN PHE LEU ASN GLN ILE ARG LYS GLU ASN THR TYR VAL SEQRES 3 E 78 THR VAL PHE LEU LEU ASN GLY PHE GLN LEU ARG GLY GLN SEQRES 4 E 78 VAL LYS GLY PHE ASP ASN PHE THR VAL LEU LEU GLU SER SEQRES 5 E 78 GLU GLY LYS GLN GLN LEU ILE TYR LYS HIS ALA ILE SER SEQRES 6 E 78 THR PHE ALA PRO GLN LYS ASN VAL GLN LEU GLU LEU GLU SEQRES 1 F 78 GLY PRO LEU GLY SER MET LYS PRO ILE ASN ILE GLN ASP SEQRES 2 F 78 GLN PHE LEU ASN GLN ILE ARG LYS GLU ASN THR TYR VAL SEQRES 3 F 78 THR VAL PHE LEU LEU ASN GLY PHE GLN LEU ARG GLY GLN SEQRES 4 F 78 VAL LYS GLY PHE ASP ASN PHE THR VAL LEU LEU GLU SER SEQRES 5 F 78 GLU GLY LYS GLN GLN LEU ILE TYR LYS HIS ALA ILE SER SEQRES 6 F 78 THR PHE ALA PRO GLN LYS ASN VAL GLN LEU GLU LEU GLU SEQRES 1 X 7 A G A G A G A
FORMUL 8 HOH *138(H2 O)
HELIX 1 1 ASN A 5 GLU A 17 1 13 HELIX 2 2 ASN B 5 GLU B 17 1 13 HELIX 3 3 ASN C 5 GLU C 17 1 13 HELIX 4 4 ASN D 5 GLU D 17 1 13 HELIX 5 5 ASN E 5 GLU E 17 1 13 HELIX 6 6 ASN F 5 GLU F 17 1 13
SHEET 1 A31 VAL A 21 LEU A 25 0 SHEET 2 A31 GLN A 30 PHE A 38 -1 O LEU A 31 N VAL A 23 SHEET 3 A31 THR A 42 SER A 47 -1 O GLU A 46 N GLN A 34 SHEET 4 A31 LYS A 50 TYR A 55 -1 O ILE A 54 N VAL A 43 SHEET 5 A31 ILE B 59 PRO B 64 -1 O SER B 60 N TYR A 55 SHEET 6 A31 VAL B 21 LEU B 25 -1 N THR B 22 O ALA B 63 SHEET 7 A31 GLN B 30 PHE B 38 -1 O LEU B 31 N VAL B 23 SHEET 8 A31 THR B 42 SER B 47 -1 O LEU B 44 N GLY B 37 SHEET 9 A31 LYS B 50 TYR B 55 -1 O ILE B 54 N VAL B 43 SHEET 10 A31 ILE C 59 ALA C 63 -1 O PHE C 62 N LEU B 53 SHEET 11 A31 VAL C 21 LEU C 25 -1 N PHE C 24 O THR C 61 SHEET 12 A31 GLN C 30 PHE C 38 -1 O LEU C 31 N VAL C 23 SHEET 13 A31 THR C 42 SER C 47 -1 O LEU C 44 N LYS C 36 SHEET 14 A31 LYS C 50 TYR C 55 -1 O ILE C 54 N VAL C 43 SHEET 15 A31 ILE D 59 PRO D 64 -1 O SER D 60 N TYR C 55 SHEET 16 A31 TYR D 20 LEU D 25 -1 N THR D 22 O ALA D 63 SHEET 17 A31 GLN D 30 PHE D 38 -1 O LEU D 31 N VAL D 23 SHEET 18 A31 THR D 42 SER D 47 -1 O LEU D 44 N GLY D 37 SHEET 19 A31 LYS D 50 TYR D 55 -1 O ILE D 54 N VAL D 43 SHEET 20 A31 ILE E 59 PRO E 64 -1 O SER E 60 N TYR D 55 SHEET 21 A31 VAL E 21 LEU E 25 -1 N PHE E 24 O SER E 60 SHEET 22 A31 GLN E 30 PHE E 38 -1 O LEU E 31 N VAL E 23 SHEET 23 A31 THR E 42 SER E 47 -1 O LEU E 44 N LYS E 36 SHEET 24 A31 LYS E 50 TYR E 55 -1 O ILE E 54 N VAL E 43 SHEET 25 A31 ILE F 59 PRO F 64 -1 O SER F 60 N TYR E 55 SHEET 26 A31 TYR F 20 LEU F 25 -1 N PHE F 24 O SER F 60 SHEET 27 A31 GLN F 30 PHE F 38 -1 O GLY F 33 N VAL F 21 SHEET 28 A31 THR F 42 SER F 47 -1 O LEU F 44 N LYS F 36 SHEET 29 A31 LYS F 50 TYR F 55 -1 O GLN F 52 N LEU F 45 SHEET 30 A31 ILE A 59 PRO A 64 -1 N SER A 60 O TYR F 55 SHEET 31 A31 VAL A 21 LEU A 25 -1 N PHE A 24 O SER A 60
CRYST1 123.700 123.700 119.131 90.00 90.00 90.00 I 4 2 2 96
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 0.008084 0.000000 0.000000 0.00000
SCALE2 0.000000 0.008084 0.000000 0.00000
SCALE3 0.000000 0.000000 0.008394 0.00000