10 20 30 40 50 60 70 80 3HR1 - Header ----|----|----|----|----|----|----|----|----|----|----|----|----|----|----|----| Asymmetric UnitHEADER HYDROLASE/HYDROLASE INHIBITOR 08-JUN-09 3HR1
TITLE DISCOVERY OF NOVEL INHIBITORS OF PDE10A
COMPND MOL_ID: 1; COMPND 2 MOLECULE: CAMP AND CAMP-INHIBITED CGMP 3',5'-CYCLIC COMPND 3 PHOSPHODIESTERASE 10A; COMPND 4 CHAIN: A; COMPND 5 EC: 3.1.4.17, 3.1.4.35; COMPND 6 ENGINEERED: YES
SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: RATTUS NORVEGICUS; SOURCE 3 ORGANISM_COMMON: RAT; SOURCE 4 ORGANISM_TAXID: 10116; SOURCE 5 GENE: PDE10A; SOURCE 6 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA; SOURCE 7 EXPRESSION_SYSTEM_COMMON: FALL ARMYWORM; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 7108; SOURCE 9 EXPRESSION_SYSTEM_STRAIN: SF21; SOURCE 10 EXPRESSION_SYSTEM_VECTOR: BACULOVIRUS
KEYWDS PHOSPHODIESTERASE 10A, PDE 10A, PDE10 INHIBITORS, ALLOSTERIC KEYWDS 2 ENZYME, ALTERNATIVE SPLICING, CAMP, CAMP-BINDING, CGMP, KEYWDS 3 CGMP-BINDING, CYTOPLASM, HYDROLASE, MAGNESIUM, METAL- KEYWDS 4 BINDING, NUCLEOTIDE-BINDING, ZINC, HYDROLASE/HYDROLASE KEYWDS 5 INHIBITOR COMPLEX
EXPDTA X-RAY DIFFRACTION
AUTHOR J.PANDIT,E.S.MARR
REVDAT 2 22-SEP-09 3HR1 1 JRNL REVDAT 1 04-AUG-09 3HR1 0
JRNL AUTH P.R.VERHOEST,D.S.CHAPIN,M.CORMAN,K.FONSECA, JRNL AUTH 2 J.F.HARMS,X.HOU,E.S.MARR,F.S.MENNITI,F.NELSON, JRNL AUTH 3 R.O'CONNOR,J.PANDIT,C.PROULX-LAFRANCE,A.W.SCHMIDT, JRNL AUTH 4 C.J.SCHMIDT,J.A.SUICIAK,S.LIRAS JRNL TITL DISCOVERY OF A NOVEL CLASS OF PHOSPHODIESTERASE 10A JRNL TITL 2 INHIBITORS AND IDENTIFICATION OF CLINICAL CANDIDATE JRNL TITL 3 2-[4-(1-METHYL-4-PYRIDIN-4-YL-1H-PYRAZOL-3-YL)- JRNL TITL 4 PHENOXYMETHYL]-QUINOLINE (PF-2545920) FOR THE JRNL TITL 5 TREATMENT OF SCHIZOPHRENIA JRNL REF J.MED.CHEM. V. 52 5188 2009 JRNL REFN ISSN 0022-2623 JRNL PMID 19630403 JRNL DOI 10.1021/JM900521K
REMARK 1
REMARK 2 REMARK 2 RESOLUTION. 1.53 ANGSTROMS.
REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0005 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.53 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 44.25 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 85.4 REMARK 3 NUMBER OF REFLECTIONS : 57989 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.186 REMARK 3 R VALUE (WORKING SET) : 0.184 REMARK 3 FREE R VALUE : 0.211 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 7.700 REMARK 3 FREE R VALUE TEST SET COUNT : 4479 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.53 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.57 REMARK 3 REFLECTION IN BIN (WORKING SET) : 586 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 12.98 REMARK 3 BIN R VALUE (WORKING SET) : 0.3570 REMARK 3 BIN FREE R VALUE SET COUNT : 65 REMARK 3 BIN FREE R VALUE : 0.4290 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2488 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 42 REMARK 3 SOLVENT ATOMS : 456 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 23.13 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.64000 REMARK 3 B22 (A**2) : -0.64000 REMARK 3 B33 (A**2) : 0.96000 REMARK 3 B12 (A**2) : -0.32000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.082 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.083 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.058 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 1.627 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.966 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.955 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2592 ; 0.012 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3513 ; 1.179 ; 1.964 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 306 ; 4.670 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 124 ;34.884 ;23.710 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 450 ;12.191 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 17 ;21.318 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 377 ; 0.078 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1969 ; 0.005 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1407 ; 0.205 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1806 ; 0.302 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 336 ; 0.143 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): 1 ; 0.044 ; 0.200 REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 57 ; 0.203 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 34 ; 0.185 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1586 ; 0.736 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2479 ; 1.104 ; 2.000 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1178 ; 1.862 ; 3.000 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1034 ; 2.900 ; 4.500 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE REMARK 3 RIDING POSITIONS
REMARK 4 REMARK 4 3HR1 COMPLIES WITH FORMAT V. 3.20, 01-DEC-08
REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 12-JUN-09. REMARK 100 THE RCSB ID CODE IS RCSB053477.
REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU FRE REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.54 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU RAXIS HTC REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : DTREK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 57998 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.530 REMARK 200 RESOLUTION RANGE LOW (A) : 44.250 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 85.4 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.53 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.59 REMARK 200 COMPLETENESS FOR SHELL (%) : 17.5 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: FOURIER SYNTHESIS REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: 2O8H REMARK 200 REMARK 200 REMARK: NULL
REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 53.93 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.67 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: NULL
REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: H 3 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 X+2/3,Y+1/3,Z+1/3 REMARK 290 5555 -Y+2/3,X-Y+1/3,Z+1/3 REMARK 290 6555 -X+Y+2/3,-X+1/3,Z+1/3 REMARK 290 7555 X+1/3,Y+2/3,Z+2/3 REMARK 290 8555 -Y+1/3,X-Y+2/3,Z+2/3 REMARK 290 9555 -X+Y+1/3,-X+2/3,Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 60.33000 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 34.83154 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 27.73667 REMARK 290 SMTRY1 5 -0.500000 -0.866025 0.000000 60.33000 REMARK 290 SMTRY2 5 0.866025 -0.500000 0.000000 34.83154 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 27.73667 REMARK 290 SMTRY1 6 -0.500000 0.866025 0.000000 60.33000 REMARK 290 SMTRY2 6 -0.866025 -0.500000 0.000000 34.83154 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 27.73667 REMARK 290 SMTRY1 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 69.66308 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 55.47333 REMARK 290 SMTRY1 8 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 8 0.866025 -0.500000 0.000000 69.66308 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 55.47333 REMARK 290 SMTRY1 9 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 -0.500000 0.000000 69.66308 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 55.47333 REMARK 290 REMARK 290 REMARK: NULL
REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA.
REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000
REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 405 REMARK 465 HIS A 406 REMARK 465 HIS A 407 REMARK 465 HIS A 408 REMARK 465 HIS A 409 REMARK 465 HIS A 410 REMARK 465 HIS A 411 REMARK 465 SER A 412 REMARK 465 SER A 413 REMARK 465 GLY A 414 REMARK 465 LEU A 415 REMARK 465 VAL A 416 REMARK 465 PRO A 417 REMARK 465 ARG A 418 REMARK 465 GLY A 419 REMARK 465 SER A 420 REMARK 465 ALA A 421 REMARK 465 MET A 422 REMARK 465 MET A 423 REMARK 465 HIS A 424 REMARK 465 HIS A 425 REMARK 465 HIS A 426 REMARK 465 HIS A 427 REMARK 465 HIS A 428 REMARK 465 HIS A 429 REMARK 465 SER A 430 REMARK 465 SER A 431 REMARK 465 GLY A 432 REMARK 465 LEU A 433 REMARK 465 VAL A 434 REMARK 465 PRO A 435 REMARK 465 ARG A 436 REMARK 465 GLY A 437 REMARK 465 SER A 438 REMARK 465 ALA A 439 REMARK 465 MET A 440 REMARK 465 GLY A 441 REMARK 465 THR A 442 REMARK 465 SER A 443 REMARK 465 GLU A 444 REMARK 465 GLU A 445 REMARK 465 TRP A 446 REMARK 465 GLN A 447 REMARK 465 GLY A 448 REMARK 465 LEU A 449 REMARK 465 MET A 450 REMARK 465 HIS A 451 REMARK 465 PHE A 452 REMARK 465 GLY A 758 REMARK 465 GLU A 759 REMARK 465 GLU A 760 REMARK 465 THR A 761 REMARK 465 ALA A 762 REMARK 465 MET A 763 REMARK 465 TRP A 764 REMARK 465 ILE A 765 REMARK 465 SER A 766 REMARK 465 GLY A 767 REMARK 465 PRO A 768 REMARK 465 ALA A 769 REMARK 465 THR A 770 REMARK 465 SER A 771 REMARK 465 LYS A 772 REMARK 465 SER A 773 REMARK 465 THR A 774 REMARK 465 SER A 775 REMARK 465 GLU A 776 REMARK 465 LYS A 777 REMARK 465 PRO A 778 REMARK 465 THR A 779 REMARK 465 ARG A 780 REMARK 465 LYS A 781 REMARK 465 VAL A 782 REMARK 465 ASP A 783 REMARK 465 ASP A 784
REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 115 O HOH A 829 2.01 REMARK 500 O HOH A 312 O HOH A 365 2.10 REMARK 500 O HOH A 96 O HOH A 835 2.11 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 ND2 ASN A 474 O2 SO4 A 998 3555 2.14 REMARK 500 O HOH A 801 O HOH A 824 3555 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TYR A 514 -55.11 -121.92 REMARK 500 VAL A 723 -63.78 -130.41 REMARK 500 REMARK 500 REMARK: NULL
REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 1 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 519 NE2 REMARK 620 2 HIS A 553 NE2 101.9 REMARK 620 3 ASP A 554 OD2 91.1 90.0 REMARK 620 4 ASP A 664 OD1 85.5 94.6 174.8 REMARK 620 5 HOH A 3 O 149.4 108.6 90.5 90.5 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 2 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 554 OD1 REMARK 620 2 HOH A 3 O 100.0 REMARK 620 3 HOH A 5 O 103.7 88.5 REMARK 620 4 HOH A 786 O 87.3 167.8 80.2 REMARK 620 5 HOH A 4 O 164.6 93.1 84.7 81.3 REMARK 620 6 HOH A 785 O 85.6 104.3 162.8 85.9 83.2 REMARK 620 N 1 2 3 4 5
REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 997 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 998 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PF9 A 999 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 1 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 2
REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3HQW RELATED DB: PDB REMARK 900 RELATED ID: 3HQY RELATED DB: PDB REMARK 900 RELATED ID: 3HQZ RELATED DB: PDB
DBREF 3HR1 A 442 784 UNP Q9QYJ6 PDE10_RAT 452 794
SEQADV 3HR1 MET A 405 UNP Q9QYJ6 EXPRESSION TAG SEQADV 3HR1 HIS A 406 UNP Q9QYJ6 EXPRESSION TAG SEQADV 3HR1 HIS A 407 UNP Q9QYJ6 EXPRESSION TAG SEQADV 3HR1 HIS A 408 UNP Q9QYJ6 EXPRESSION TAG SEQADV 3HR1 HIS A 409 UNP Q9QYJ6 EXPRESSION TAG SEQADV 3HR1 HIS A 410 UNP Q9QYJ6 EXPRESSION TAG SEQADV 3HR1 HIS A 411 UNP Q9QYJ6 EXPRESSION TAG SEQADV 3HR1 SER A 412 UNP Q9QYJ6 EXPRESSION TAG SEQADV 3HR1 SER A 413 UNP Q9QYJ6 EXPRESSION TAG SEQADV 3HR1 GLY A 414 UNP Q9QYJ6 EXPRESSION TAG SEQADV 3HR1 LEU A 415 UNP Q9QYJ6 EXPRESSION TAG SEQADV 3HR1 VAL A 416 UNP Q9QYJ6 EXPRESSION TAG SEQADV 3HR1 PRO A 417 UNP Q9QYJ6 EXPRESSION TAG SEQADV 3HR1 ARG A 418 UNP Q9QYJ6 EXPRESSION TAG SEQADV 3HR1 GLY A 419 UNP Q9QYJ6 EXPRESSION TAG SEQADV 3HR1 SER A 420 UNP Q9QYJ6 EXPRESSION TAG SEQADV 3HR1 ALA A 421 UNP Q9QYJ6 EXPRESSION TAG SEQADV 3HR1 MET A 422 UNP Q9QYJ6 EXPRESSION TAG SEQADV 3HR1 MET A 423 UNP Q9QYJ6 EXPRESSION TAG SEQADV 3HR1 HIS A 424 UNP Q9QYJ6 EXPRESSION TAG SEQADV 3HR1 HIS A 425 UNP Q9QYJ6 EXPRESSION TAG SEQADV 3HR1 HIS A 426 UNP Q9QYJ6 EXPRESSION TAG SEQADV 3HR1 HIS A 427 UNP Q9QYJ6 EXPRESSION TAG SEQADV 3HR1 HIS A 428 UNP Q9QYJ6 EXPRESSION TAG SEQADV 3HR1 HIS A 429 UNP Q9QYJ6 EXPRESSION TAG SEQADV 3HR1 SER A 430 UNP Q9QYJ6 EXPRESSION TAG SEQADV 3HR1 SER A 431 UNP Q9QYJ6 EXPRESSION TAG SEQADV 3HR1 GLY A 432 UNP Q9QYJ6 EXPRESSION TAG SEQADV 3HR1 LEU A 433 UNP Q9QYJ6 EXPRESSION TAG SEQADV 3HR1 VAL A 434 UNP Q9QYJ6 EXPRESSION TAG SEQADV 3HR1 PRO A 435 UNP Q9QYJ6 EXPRESSION TAG SEQADV 3HR1 ARG A 436 UNP Q9QYJ6 EXPRESSION TAG SEQADV 3HR1 GLY A 437 UNP Q9QYJ6 EXPRESSION TAG SEQADV 3HR1 SER A 438 UNP Q9QYJ6 EXPRESSION TAG SEQADV 3HR1 ALA A 439 UNP Q9QYJ6 EXPRESSION TAG SEQADV 3HR1 MET A 440 UNP Q9QYJ6 EXPRESSION TAG SEQADV 3HR1 GLY A 441 UNP Q9QYJ6 EXPRESSION TAG
SEQRES 1 A 380 MET HIS HIS HIS HIS HIS HIS SER SER GLY LEU VAL PRO SEQRES 2 A 380 ARG GLY SER ALA MET MET HIS HIS HIS HIS HIS HIS SER SEQRES 3 A 380 SER GLY LEU VAL PRO ARG GLY SER ALA MET GLY THR SER SEQRES 4 A 380 GLU GLU TRP GLN GLY LEU MET HIS PHE ASN LEU PRO ALA SEQRES 5 A 380 ARG ILE CYS ARG ASP ILE GLU LEU PHE HIS PHE ASP ILE SEQRES 6 A 380 GLY PRO PHE GLU ASN MET TRP PRO GLY ILE PHE VAL TYR SEQRES 7 A 380 MET ILE HIS ARG SER CYS GLY THR SER CYS PHE GLU LEU SEQRES 8 A 380 GLU LYS LEU CYS ARG PHE ILE MET SER VAL LYS LYS ASN SEQRES 9 A 380 TYR ARG ARG VAL PRO TYR HIS ASN TRP LYS HIS ALA VAL SEQRES 10 A 380 THR VAL ALA HIS CYS MET TYR ALA ILE LEU GLN ASN ASN SEQRES 11 A 380 ASN GLY LEU PHE THR ASP LEU GLU ARG LYS GLY LEU LEU SEQRES 12 A 380 ILE ALA CYS LEU CYS HIS ASP LEU ASP HIS ARG GLY PHE SEQRES 13 A 380 SER ASN SER TYR LEU GLN LYS PHE ASP HIS PRO LEU ALA SEQRES 14 A 380 ALA LEU TYR SER THR SER THR MET GLU GLN HIS HIS PHE SEQRES 15 A 380 SER GLN THR VAL SER ILE LEU GLN LEU GLU GLY HIS ASN SEQRES 16 A 380 ILE PHE SER THR LEU SER SER SER GLU TYR GLU GLN VAL SEQRES 17 A 380 LEU GLU ILE ILE ARG LYS ALA ILE ILE ALA THR ASP LEU SEQRES 18 A 380 ALA LEU TYR PHE GLY ASN ARG LYS GLN LEU GLU GLU MET SEQRES 19 A 380 TYR GLN THR GLY SER LEU ASN LEU HIS ASN GLN SER HIS SEQRES 20 A 380 ARG ASP ARG VAL ILE GLY LEU MET MET THR ALA CYS ASP SEQRES 21 A 380 LEU CYS SER VAL THR LYS LEU TRP PRO VAL THR LYS LEU SEQRES 22 A 380 THR ALA ASN ASP ILE TYR ALA GLU PHE TRP ALA GLU GLY SEQRES 23 A 380 ASP GLU MET LYS LYS LEU GLY ILE GLN PRO ILE PRO MET SEQRES 24 A 380 MET ASP ARG ASP LYS ARG ASP GLU VAL PRO GLN GLY GLN SEQRES 25 A 380 LEU GLY PHE TYR ASN ALA VAL ALA ILE PRO CYS TYR THR SEQRES 26 A 380 THR LEU THR GLN ILE LEU PRO PRO THR GLU PRO LEU LEU SEQRES 27 A 380 LYS ALA CYS ARG ASP ASN LEU ASN GLN TRP GLU LYS VAL SEQRES 28 A 380 ILE ARG GLY GLU GLU THR ALA MET TRP ILE SER GLY PRO SEQRES 29 A 380 ALA THR SER LYS SER THR SER GLU LYS PRO THR ARG LYS SEQRES 30 A 380 VAL ASP ASP
HET SO4 A 997 5 HET SO4 A 998 5 HET PF9 A 999 30 HET ZN A 1 1 HET MG A 2 1
HETNAM SO4 SULFATE ION HETNAM PF9 2-{[4-(1-METHYL-4-PYRIDIN-4-YL-1H-PYRAZOL-3-YL) HETNAM 2 PF9 PHENOXY]METHYL}QUINOLINE HETNAM ZN ZINC ION HETNAM MG MAGNESIUM ION
FORMUL 2 SO4 2(O4 S 2-) FORMUL 4 PF9 C25 H20 N4 O FORMUL 5 ZN ZN 2+ FORMUL 6 MG MG 2+ FORMUL 7 HOH *456(H2 O)
HELIX 1 1 PRO A 455 ILE A 462 1 8 HELIX 2 2 PHE A 472 ASN A 474 5 3 HELIX 3 3 MET A 475 GLY A 489 1 15 HELIX 4 4 GLU A 494 ASN A 508 1 15 HELIX 5 5 ASN A 516 ASN A 533 1 18 HELIX 6 6 THR A 539 HIS A 553 1 15 HELIX 7 7 SER A 561 ASP A 569 1 9 HELIX 8 8 HIS A 570 TYR A 576 1 7 HELIX 9 9 SER A 579 GLN A 594 1 16 HELIX 10 10 SER A 605 THR A 623 1 19 HELIX 11 11 ASP A 624 THR A 641 1 18 HELIX 12 12 ASN A 648 LEU A 665 1 18 HELIX 13 13 CYS A 666 LYS A 670 5 5 HELIX 14 14 LEU A 671 LEU A 696 1 26 HELIX 15 15 ILE A 701 ASP A 710 5 10 HELIX 16 16 GLU A 711 VAL A 723 1 13 HELIX 17 17 VAL A 723 LEU A 735 1 13 HELIX 18 18 THR A 738 ARG A 757 1 20
LINK NE2 HIS A 519 ZN ZN A 1 1555 1555 2.13 LINK NE2 HIS A 553 ZN ZN A 1 1555 1555 2.11 LINK OD1 ASP A 554 MG MG A 2 1555 1555 2.04 LINK OD2 ASP A 554 ZN ZN A 1 1555 1555 2.18 LINK OD1 ASP A 664 ZN ZN A 1 1555 1555 2.19 LINK ZN ZN A 1 O HOH A 3 1555 1555 2.05 LINK MG MG A 2 O HOH A 3 1555 1555 1.95 LINK MG MG A 2 O HOH A 5 1555 1555 2.19 LINK MG MG A 2 O HOH A 786 1555 1555 2.33 LINK MG MG A 2 O HOH A 4 1555 1555 2.15 LINK MG MG A 2 O HOH A 785 1555 1555 2.12
SITE 1 AC1 5 HOH A 341 GLU A 473 ASN A 474 ARG A 510 SITE 2 AC1 5 SO4 A 998 SITE 1 AC2 8 HOH A 153 HOH A 164 PHE A 472 GLU A 473 SITE 2 AC2 8 ASN A 474 ARG A 510 ARG A 558 SO4 A 997 SITE 1 AC3 18 HOH A 8 HOH A 84 HOH A 98 TYR A 514 SITE 2 AC3 18 HIS A 647 LEU A 665 VAL A 668 TYR A 683 SITE 3 AC3 18 PHE A 686 PRO A 702 MET A 703 LYS A 708 SITE 4 AC3 18 GLU A 711 VAL A 712 GLY A 715 GLN A 716 SITE 5 AC3 18 PHE A 719 HOH A 829 SITE 1 AC4 7 MG A 2 HOH A 3 HOH A 115 HIS A 519 SITE 2 AC4 7 HIS A 553 ASP A 554 ASP A 664 SITE 1 AC5 7 ZN A 1 HOH A 3 HOH A 4 HOH A 5 SITE 2 AC5 7 ASP A 554 HOH A 785 HOH A 786
CRYST1 120.660 120.660 83.210 90.00 90.00 120.00 H 3 9
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 0.008288 0.004785 0.000000 0.00000
SCALE2 0.000000 0.009570 0.000000 0.00000
SCALE3 0.000000 0.000000 0.012018 0.00000