10 20 30 40 50 60 70 80 3HD0 - Header ----|----|----|----|----|----|----|----|----|----|----|----|----|----|----|----| Asymmetric UnitHEADER HYDROLASE 06-MAY-09 3HD0
TITLE CRYSTAL STRUCTURE OF TM1865, AN ENDONUCLEASE V FROM TITLE 2 THERMOTOGA MARITIMA
COMPND MOL_ID: 1; COMPND 2 MOLECULE: ENDONUCLEASE V; COMPND 3 CHAIN: A, B, D; COMPND 4 SYNONYM: DEOXYINOSINE 3'ENDONUCLEASE, DEOXYRIBONUCLEASE V, COMPND 5 DNASE V; COMPND 6 EC: 3.1.21.7; COMPND 7 ENGINEERED: YES
SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: THERMOTOGA MARITIMA; SOURCE 3 ORGANISM_TAXID: 2336; SOURCE 4 GENE: NFI, TM_1865; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID
KEYWDS STRUCTURAL GENOMICS, ISFI, RNASEH SUPERFAMILY, ENDONUCLEASE KEYWDS 2 V, PSI-2, PROTEIN STRUCTURE INITIATIVE, INTEGRATED CENTER KEYWDS 3 FOR STRUCTURE AND FUNCTION INNOVATION, CYTOPLASM, DNA KEYWDS 4 DAMAGE, DNA REPAIR, ENDONUCLEASE, HYDROLASE, MAGNESIUM, KEYWDS 5 NUCLEASE
EXPDTA X-RAY DIFFRACTION
AUTHOR D.UTEPBERGENOV,D.R.COOPER,U.DEREWENDA,Z.S.DEREWENDA, AUTHOR 2 INTEGRATED CENTER FOR STRUCTURE AND FUNCTION INNOVATION AUTHOR 3 (ISFI)
REVDAT 1 14-JUL-09 3HD0 0
JRNL AUTH D.UTEPBERGENOV,D.R.COOPER,U.DEREWENDA,Z.S.DEREWENDA JRNL TITL CRYSTAL STRUCTURE OF TM1865, AN ENDONUCLEASE V FROM JRNL TITL 2 THERMOTOGA MARITIMA JRNL REF TO BE PUBLISHED JRNL REFN
REMARK 1
REMARK 2 REMARK 2 RESOLUTION. 2.70 ANGSTROMS.
REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 16183 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.167 REMARK 3 R VALUE (WORKING SET) : 0.163 REMARK 3 FREE R VALUE : 0.255 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.200 REMARK 3 FREE R VALUE TEST SET COUNT : 890 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.70 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.77 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1148 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.67 REMARK 3 BIN R VALUE (WORKING SET) : 0.2440 REMARK 3 BIN FREE R VALUE SET COUNT : 76 REMARK 3 BIN FREE R VALUE : 0.3240 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5291 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 221 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 28.28 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.38000 REMARK 3 B22 (A**2) : 0.75000 REMARK 3 B33 (A**2) : -0.37000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.410 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.274 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 26.597 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.951 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.882 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 5451 ; 0.015 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 7352 ; 1.635 ; 1.992 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 656 ; 6.182 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 226 ;31.169 ;22.478 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 972 ;19.993 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 44 ;18.132 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 797 ; 0.106 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4070 ; 0.005 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 2665 ; 0.234 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 3681 ; 0.326 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 284 ; 0.162 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 136 ; 0.214 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 23 ; 0.187 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 3361 ; 1.491 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 5353 ; 2.583 ; 2.000 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2325 ; 4.025 ; 3.000 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1999 ; 6.646 ; 4.500 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL
REMARK 4 REMARK 4 3HD0 COMPLIES WITH FORMAT V. 3.20, 01-DEC-08
REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 24-JUN-09. REMARK 100 THE RCSB ID CODE IS RCSB052983.
REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 27-JUN-07 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 22-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97876, 0.97860, 0.97243 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 300 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : HKL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 17147 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.700 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 5.300 REMARK 200 R MERGE (I) : 0.13100 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 15.3330 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.70 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.80 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.8 REMARK 200 DATA REDUNDANCY IN SHELL : 4.90 REMARK 200 R MERGE FOR SHELL (I) : 0.45300 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 3.270 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: SOLVE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL
REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 33.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.84 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: CRYSTALLIZATION DROP WAS 1:1 REMARK 280 MIXTURE OF PROTEIN DISSOLVED IN 20 MM TRIS PH 8.5, 100 MM NACL REMARK 280 AND 24 W/V% PEG 1500, 20% GLYCEROL. THE CRYSTALLIZATION REMARK 280 RESERVOIR WAS 1.5 M NACL, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 298K
REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 34.78550 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 60.13300 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 35.98300 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 60.13300 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 34.78550 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 35.98300 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL
REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THE BIOLOGICAL UNIT IS A MONOMER.
REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000
REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MSE A -11 REMARK 465 GLY A -10 REMARK 465 SER A -9 REMARK 465 ASP A -8 REMARK 465 LYS A -7 REMARK 465 ILE A -6 REMARK 465 HIS A -5 REMARK 465 HIS A -4 REMARK 465 HIS A -3 REMARK 465 HIS A -2 REMARK 465 HIS A -1 REMARK 465 HIS A 0 REMARK 465 LYS A 221 REMARK 465 LYS A 222 REMARK 465 GLY A 223 REMARK 465 LEU A 224 REMARK 465 PHE A 225 REMARK 465 MSE B -11 REMARK 465 GLY B -10 REMARK 465 SER B -9 REMARK 465 ASP B -8 REMARK 465 LYS B -7 REMARK 465 ILE B -6 REMARK 465 HIS B -5 REMARK 465 HIS B -4 REMARK 465 HIS B -3 REMARK 465 HIS B -2 REMARK 465 HIS B -1 REMARK 465 HIS B 0 REMARK 465 MSE B 1 REMARK 465 ASP B 2 REMARK 465 TYR B 3 REMARK 465 ARG B 4 REMARK 465 GLN B 5 REMARK 465 LYS B 222 REMARK 465 GLY B 223 REMARK 465 LEU B 224 REMARK 465 PHE B 225 REMARK 465 MSE D -11 REMARK 465 GLY D -10 REMARK 465 SER D -9 REMARK 465 ASP D -8 REMARK 465 LYS D -7 REMARK 465 ILE D -6 REMARK 465 HIS D -5 REMARK 465 HIS D -4 REMARK 465 HIS D -3 REMARK 465 HIS D -2 REMARK 465 LYS D 222 REMARK 465 GLY D 223 REMARK 465 LEU D 224 REMARK 465 PHE D 225
REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLN A 112 -155.85 -125.28 REMARK 500 ARG A 153 127.54 -38.49 REMARK 500 ASP B 10 34.92 -87.33 REMARK 500 LEU B 84 20.58 -142.88 REMARK 500 LEU B 120 64.97 -156.39 REMARK 500 CYS B 154 -2.12 82.01 REMARK 500 LEU D 120 63.15 -160.60 REMARK 500 ASP D 151 33.42 -77.66 REMARK 500 CYS D 154 1.16 82.26 REMARK 500 REMARK 500 REMARK: NULL
REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH B 295 DISTANCE = 6.59 ANGSTROMS
REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: ISFI332 RELATED DB: TARGETDB
DBREF 3HD0 A 1 222 UNP Q9X2H9 NFI_THEMA 1 222 DBREF 3HD0 B 1 222 UNP Q9X2H9 NFI_THEMA 1 222 DBREF 3HD0 D 1 222 UNP Q9X2H9 NFI_THEMA 1 222
SEQADV 3HD0 MSE A -11 UNP Q9X2H9 EXPRESSION TAG SEQADV 3HD0 GLY A -10 UNP Q9X2H9 EXPRESSION TAG SEQADV 3HD0 SER A -9 UNP Q9X2H9 EXPRESSION TAG SEQADV 3HD0 ASP A -8 UNP Q9X2H9 EXPRESSION TAG SEQADV 3HD0 LYS A -7 UNP Q9X2H9 EXPRESSION TAG SEQADV 3HD0 ILE A -6 UNP Q9X2H9 EXPRESSION TAG SEQADV 3HD0 HIS A -5 UNP Q9X2H9 EXPRESSION TAG SEQADV 3HD0 HIS A -4 UNP Q9X2H9 EXPRESSION TAG SEQADV 3HD0 HIS A -3 UNP Q9X2H9 EXPRESSION TAG SEQADV 3HD0 HIS A -2 UNP Q9X2H9 EXPRESSION TAG SEQADV 3HD0 HIS A -1 UNP Q9X2H9 EXPRESSION TAG SEQADV 3HD0 HIS A 0 UNP Q9X2H9 EXPRESSION TAG SEQADV 3HD0 GLY A 223 UNP Q9X2H9 EXPRESSION TAG SEQADV 3HD0 LEU A 224 UNP Q9X2H9 EXPRESSION TAG SEQADV 3HD0 PHE A 225 UNP Q9X2H9 EXPRESSION TAG SEQADV 3HD0 MSE B -11 UNP Q9X2H9 EXPRESSION TAG SEQADV 3HD0 GLY B -10 UNP Q9X2H9 EXPRESSION TAG SEQADV 3HD0 SER B -9 UNP Q9X2H9 EXPRESSION TAG SEQADV 3HD0 ASP B -8 UNP Q9X2H9 EXPRESSION TAG SEQADV 3HD0 LYS B -7 UNP Q9X2H9 EXPRESSION TAG SEQADV 3HD0 ILE B -6 UNP Q9X2H9 EXPRESSION TAG SEQADV 3HD0 HIS B -5 UNP Q9X2H9 EXPRESSION TAG SEQADV 3HD0 HIS B -4 UNP Q9X2H9 EXPRESSION TAG SEQADV 3HD0 HIS B -3 UNP Q9X2H9 EXPRESSION TAG SEQADV 3HD0 HIS B -2 UNP Q9X2H9 EXPRESSION TAG SEQADV 3HD0 HIS B -1 UNP Q9X2H9 EXPRESSION TAG SEQADV 3HD0 HIS B 0 UNP Q9X2H9 EXPRESSION TAG SEQADV 3HD0 GLY B 223 UNP Q9X2H9 EXPRESSION TAG SEQADV 3HD0 LEU B 224 UNP Q9X2H9 EXPRESSION TAG SEQADV 3HD0 PHE B 225 UNP Q9X2H9 EXPRESSION TAG SEQADV 3HD0 MSE D -11 UNP Q9X2H9 EXPRESSION TAG SEQADV 3HD0 GLY D -10 UNP Q9X2H9 EXPRESSION TAG SEQADV 3HD0 SER D -9 UNP Q9X2H9 EXPRESSION TAG SEQADV 3HD0 ASP D -8 UNP Q9X2H9 EXPRESSION TAG SEQADV 3HD0 LYS D -7 UNP Q9X2H9 EXPRESSION TAG SEQADV 3HD0 ILE D -6 UNP Q9X2H9 EXPRESSION TAG SEQADV 3HD0 HIS D -5 UNP Q9X2H9 EXPRESSION TAG SEQADV 3HD0 HIS D -4 UNP Q9X2H9 EXPRESSION TAG SEQADV 3HD0 HIS D -3 UNP Q9X2H9 EXPRESSION TAG SEQADV 3HD0 HIS D -2 UNP Q9X2H9 EXPRESSION TAG SEQADV 3HD0 HIS D -1 UNP Q9X2H9 EXPRESSION TAG SEQADV 3HD0 HIS D 0 UNP Q9X2H9 EXPRESSION TAG SEQADV 3HD0 GLY D 223 UNP Q9X2H9 EXPRESSION TAG SEQADV 3HD0 LEU D 224 UNP Q9X2H9 EXPRESSION TAG SEQADV 3HD0 PHE D 225 UNP Q9X2H9 EXPRESSION TAG
SEQRES 1 A 237 MSE GLY SER ASP LYS ILE HIS HIS HIS HIS HIS HIS MSE SEQRES 2 A 237 ASP TYR ARG GLN LEU HIS ARG TRP ASP LEU PRO PRO GLU SEQRES 3 A 237 GLU ALA ILE LYS VAL GLN ASN GLU LEU ARG LYS LYS ILE SEQRES 4 A 237 LYS LEU THR PRO TYR GLU GLY GLU PRO GLU TYR VAL ALA SEQRES 5 A 237 GLY VAL ASP LEU SER PHE PRO GLY LYS GLU GLU GLY LEU SEQRES 6 A 237 ALA VAL ILE VAL VAL LEU GLU TYR PRO SER PHE LYS ILE SEQRES 7 A 237 LEU GLU VAL VAL SER GLU ARG GLY GLU ILE THR PHE PRO SEQRES 8 A 237 TYR ILE PRO GLY LEU LEU ALA PHE ARG GLU GLY PRO LEU SEQRES 9 A 237 PHE LEU LYS ALA TRP GLU LYS LEU ARG THR LYS PRO ASP SEQRES 10 A 237 VAL VAL VAL PHE ASP GLY GLN GLY LEU ALA HIS PRO ARG SEQRES 11 A 237 LYS LEU GLY ILE ALA SER HIS MSE GLY LEU PHE ILE GLU SEQRES 12 A 237 ILE PRO THR ILE GLY VAL ALA LYS SER ARG LEU TYR GLY SEQRES 13 A 237 THR PHE LYS MSE PRO GLU ASP LYS ARG CYS SER TRP SER SEQRES 14 A 237 TYR LEU TYR ASP GLY GLU GLU ILE ILE GLY CYS VAL ILE SEQRES 15 A 237 ARG THR LYS GLU GLY SER ALA PRO ILE PHE VAL SER PRO SEQRES 16 A 237 GLY HIS LEU MSE ASP VAL GLU SER SER LYS ARG LEU ILE SEQRES 17 A 237 LYS ALA PHE THR LEU PRO GLY ARG ARG ILE PRO GLU PRO SEQRES 18 A 237 THR ARG LEU ALA HIS ILE TYR THR GLN ARG LEU LYS LYS SEQRES 19 A 237 GLY LEU PHE SEQRES 1 B 237 MSE GLY SER ASP LYS ILE HIS HIS HIS HIS HIS HIS MSE SEQRES 2 B 237 ASP TYR ARG GLN LEU HIS ARG TRP ASP LEU PRO PRO GLU SEQRES 3 B 237 GLU ALA ILE LYS VAL GLN ASN GLU LEU ARG LYS LYS ILE SEQRES 4 B 237 LYS LEU THR PRO TYR GLU GLY GLU PRO GLU TYR VAL ALA SEQRES 5 B 237 GLY VAL ASP LEU SER PHE PRO GLY LYS GLU GLU GLY LEU SEQRES 6 B 237 ALA VAL ILE VAL VAL LEU GLU TYR PRO SER PHE LYS ILE SEQRES 7 B 237 LEU GLU VAL VAL SER GLU ARG GLY GLU ILE THR PHE PRO SEQRES 8 B 237 TYR ILE PRO GLY LEU LEU ALA PHE ARG GLU GLY PRO LEU SEQRES 9 B 237 PHE LEU LYS ALA TRP GLU LYS LEU ARG THR LYS PRO ASP SEQRES 10 B 237 VAL VAL VAL PHE ASP GLY GLN GLY LEU ALA HIS PRO ARG SEQRES 11 B 237 LYS LEU GLY ILE ALA SER HIS MSE GLY LEU PHE ILE GLU SEQRES 12 B 237 ILE PRO THR ILE GLY VAL ALA LYS SER ARG LEU TYR GLY SEQRES 13 B 237 THR PHE LYS MSE PRO GLU ASP LYS ARG CYS SER TRP SER SEQRES 14 B 237 TYR LEU TYR ASP GLY GLU GLU ILE ILE GLY CYS VAL ILE SEQRES 15 B 237 ARG THR LYS GLU GLY SER ALA PRO ILE PHE VAL SER PRO SEQRES 16 B 237 GLY HIS LEU MSE ASP VAL GLU SER SER LYS ARG LEU ILE SEQRES 17 B 237 LYS ALA PHE THR LEU PRO GLY ARG ARG ILE PRO GLU PRO SEQRES 18 B 237 THR ARG LEU ALA HIS ILE TYR THR GLN ARG LEU LYS LYS SEQRES 19 B 237 GLY LEU PHE SEQRES 1 D 237 MSE GLY SER ASP LYS ILE HIS HIS HIS HIS HIS HIS MSE SEQRES 2 D 237 ASP TYR ARG GLN LEU HIS ARG TRP ASP LEU PRO PRO GLU SEQRES 3 D 237 GLU ALA ILE LYS VAL GLN ASN GLU LEU ARG LYS LYS ILE SEQRES 4 D 237 LYS LEU THR PRO TYR GLU GLY GLU PRO GLU TYR VAL ALA SEQRES 5 D 237 GLY VAL ASP LEU SER PHE PRO GLY LYS GLU GLU GLY LEU SEQRES 6 D 237 ALA VAL ILE VAL VAL LEU GLU TYR PRO SER PHE LYS ILE SEQRES 7 D 237 LEU GLU VAL VAL SER GLU ARG GLY GLU ILE THR PHE PRO SEQRES 8 D 237 TYR ILE PRO GLY LEU LEU ALA PHE ARG GLU GLY PRO LEU SEQRES 9 D 237 PHE LEU LYS ALA TRP GLU LYS LEU ARG THR LYS PRO ASP SEQRES 10 D 237 VAL VAL VAL PHE ASP GLY GLN GLY LEU ALA HIS PRO ARG SEQRES 11 D 237 LYS LEU GLY ILE ALA SER HIS MSE GLY LEU PHE ILE GLU SEQRES 12 D 237 ILE PRO THR ILE GLY VAL ALA LYS SER ARG LEU TYR GLY SEQRES 13 D 237 THR PHE LYS MSE PRO GLU ASP LYS ARG CYS SER TRP SER SEQRES 14 D 237 TYR LEU TYR ASP GLY GLU GLU ILE ILE GLY CYS VAL ILE SEQRES 15 D 237 ARG THR LYS GLU GLY SER ALA PRO ILE PHE VAL SER PRO SEQRES 16 D 237 GLY HIS LEU MSE ASP VAL GLU SER SER LYS ARG LEU ILE SEQRES 17 D 237 LYS ALA PHE THR LEU PRO GLY ARG ARG ILE PRO GLU PRO SEQRES 18 D 237 THR ARG LEU ALA HIS ILE TYR THR GLN ARG LEU LYS LYS SEQRES 19 D 237 GLY LEU PHE
MODRES 3HD0 MSE A 1 MET SELENOMETHIONINE MODRES 3HD0 MSE A 126 MET SELENOMETHIONINE MODRES 3HD0 MSE A 148 MET SELENOMETHIONINE MODRES 3HD0 MSE A 187 MET SELENOMETHIONINE MODRES 3HD0 MSE B 126 MET SELENOMETHIONINE MODRES 3HD0 MSE B 148 MET SELENOMETHIONINE MODRES 3HD0 MSE B 187 MET SELENOMETHIONINE MODRES 3HD0 MSE D 1 MET SELENOMETHIONINE MODRES 3HD0 MSE D 126 MET SELENOMETHIONINE MODRES 3HD0 MSE D 148 MET SELENOMETHIONINE MODRES 3HD0 MSE D 187 MET SELENOMETHIONINE
HET MSE A 1 8 HET MSE A 126 8 HET MSE A 148 8 HET MSE A 187 8 HET MSE B 126 8 HET MSE B 148 8 HET MSE B 187 8 HET MSE D 1 8 HET MSE D 126 8 HET MSE D 148 8 HET MSE D 187 8
HETNAM MSE SELENOMETHIONINE
FORMUL 1 MSE 11(C5 H11 N O2 SE) FORMUL 4 HOH *221(H2 O)
HELIX 1 1 PRO A 12 LYS A 25 1 14 HELIX 2 2 LEU A 85 GLU A 98 1 14 HELIX 3 3 GLY A 121 GLU A 131 1 11 HELIX 4 4 ASP A 188 THR A 200 1 13 HELIX 5 5 PRO A 207 ARG A 219 1 13 HELIX 6 6 PRO B 12 LYS B 25 1 14 HELIX 7 7 LEU B 85 LYS B 99 1 15 HELIX 8 8 GLY B 121 GLU B 131 1 11 HELIX 9 9 ASP B 188 THR B 200 1 13 HELIX 10 10 PRO B 207 LYS B 221 1 15 HELIX 11 11 PRO D 12 ARG D 24 1 13 HELIX 12 12 LYS D 25 ILE D 27 5 3 HELIX 13 13 LEU D 85 GLU D 98 1 14 HELIX 14 14 GLY D 121 GLU D 131 1 11 HELIX 15 15 ASP D 188 PHE D 199 1 12 HELIX 16 16 PRO D 207 LEU D 220 1 14
SHEET 1 A 8 LYS A 65 GLU A 75 0 SHEET 2 A 8 GLU A 51 GLU A 60 -1 N GLY A 52 O GLY A 74 SHEET 3 A 8 TYR A 38 SER A 45 -1 N SER A 45 O LEU A 53 SHEET 4 A 8 VAL A 106 ASP A 110 1 O VAL A 108 N ALA A 40 SHEET 5 A 8 THR A 134 ALA A 138 1 O ILE A 135 N PHE A 109 SHEET 6 A 8 ILE A 179 PRO A 183 -1 O SER A 182 N GLY A 136 SHEET 7 A 8 GLU A 164 ILE A 170 -1 N CYS A 168 O VAL A 181 SHEET 8 A 8 TRP A 156 ASP A 161 -1 N SER A 157 O VAL A 169 SHEET 1 B 9 ILE B 66 GLU B 75 0 SHEET 2 B 9 GLU B 51 GLU B 60 -1 N GLY B 52 O GLY B 74 SHEET 3 B 9 TYR B 38 GLY B 48 -1 N VAL B 39 O LEU B 59 SHEET 4 B 9 VAL B 106 ASP B 110 1 O VAL B 106 N ALA B 40 SHEET 5 B 9 THR B 134 ALA B 138 1 O VAL B 137 N PHE B 109 SHEET 6 B 9 ILE B 179 PRO B 183 -1 O SER B 182 N GLY B 136 SHEET 7 B 9 GLU B 164 ILE B 170 -1 N CYS B 168 O VAL B 181 SHEET 8 B 9 TRP B 156 ASP B 161 -1 N LEU B 159 O ILE B 166 SHEET 9 B 9 THR B 145 PHE B 146 -1 N THR B 145 O TYR B 160 SHEET 1 C 8 ILE D 66 GLU D 75 0 SHEET 2 C 8 GLU D 51 GLU D 60 -1 N GLY D 52 O GLY D 74 SHEET 3 C 8 TYR D 38 GLY D 48 -1 N SER D 45 O LEU D 53 SHEET 4 C 8 VAL D 106 ASP D 110 1 O VAL D 108 N ALA D 40 SHEET 5 C 8 THR D 134 ALA D 138 1 O VAL D 137 N PHE D 109 SHEET 6 C 8 ILE D 179 PRO D 183 -1 O SER D 182 N GLY D 136 SHEET 7 C 8 GLU D 164 ILE D 170 -1 N CYS D 168 O VAL D 181 SHEET 8 C 8 TRP D 156 ASP D 161 -1 N LEU D 159 O GLY D 167
LINK C MSE A 1 N ASP A 2 1555 1555 1.33 LINK C HIS A 125 N MSE A 126 1555 1555 1.32 LINK C MSE A 126 N GLY A 127 1555 1555 1.32 LINK C LYS A 147 N MSE A 148 1555 1555 1.31 LINK C MSE A 148 N PRO A 149 1555 1555 1.33 LINK C LEU A 186 N MSE A 187 1555 1555 1.32 LINK C MSE A 187 N ASP A 188 1555 1555 1.32 LINK C HIS B 125 N MSE B 126 1555 1555 1.32 LINK C MSE B 126 N GLY B 127 1555 1555 1.31 LINK C LYS B 147 N MSE B 148 1555 1555 1.33 LINK C MSE B 148 N PRO B 149 1555 1555 1.33 LINK C LEU B 186 N MSE B 187 1555 1555 1.32 LINK C MSE B 187 N ASP B 188 1555 1555 1.33 LINK C HIS D 0 N MSE D 1 1555 1555 1.32 LINK C MSE D 1 N ASP D 2 1555 1555 1.32 LINK C HIS D 125 N MSE D 126 1555 1555 1.32 LINK C MSE D 126 N GLY D 127 1555 1555 1.32 LINK C LYS D 147 N MSE D 148 1555 1555 1.32 LINK C MSE D 148 N PRO D 149 1555 1555 1.33 LINK C LEU D 186 N MSE D 187 1555 1555 1.32 LINK C MSE D 187 N ASP D 188 1555 1555 1.32
CISPEP 1 TYR A 61 PRO A 62 0 3.72 CISPEP 2 PRO A 202 GLY A 203 0 -17.65 CISPEP 3 TYR B 61 PRO B 62 0 3.18 CISPEP 4 TYR D 61 PRO D 62 0 0.32
CRYST1 69.571 71.966 120.266 90.00 90.00 90.00 P 21 21 21 12
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 0.014374 0.000000 0.000000 0.00000
SCALE2 0.000000 0.013895 0.000000 0.00000
SCALE3 0.000000 0.000000 0.008315 0.00000