10 20 30 40 50 60 70 80 3H7C - Header ----|----|----|----|----|----|----|----|----|----|----|----|----|----|----|----| Asymmetric UnitHEADER HYDROLASE 24-APR-09 3H7C
TITLE CRYSTAL STRUCTURE OF ARABIDOPSIS THALIANA AGMATINE DEIMINASE TITLE 2 FROM CELL FREE EXPRESSION
COMPND MOL_ID: 1; COMPND 2 MOLECULE: AGMATINE DEIMINASE; COMPND 3 CHAIN: X; COMPND 4 SYNONYM: AGMATINE IMINOHYDROLASE, PROTEIN EMBRYO DEFECTIVE COMPND 5 1873; COMPND 6 EC: 3.5.3.12; COMPND 7 ENGINEERED: YES
SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ARABIDOPSIS THALIANA; SOURCE 3 ORGANISM_COMMON: MOUSE-EAR CRESS,THALE-CRESS; SOURCE 4 ORGANISM_TAXID: 3702; SOURCE 5 STRAIN: COLUMBIA; SOURCE 6 GENE: AIH, AT5G08170, EMB1873, T22D6.110; SOURCE 7 EXPRESSION_SYSTEM: CELL-FREE SYNTHESIS; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PEU-HIS-FLEXI; SOURCE 10 OTHER_DETAILS: WHEAT GERM
KEYWDS AGMATINE, STRUCTURAL GENOMICS, PROTEIN STRUCTURE INITIATIVE, KEYWDS 2 PSI, CENTER FOR EUKARYOTIC STRUCTURAL GENOMICS, CESG, N- KEYWDS 3 CARBAMOYLPUTRESCINE, ARGININE DECARBOXYLASE PATHWAY, KEYWDS 4 HYDROLASE, POLYAMINE BIOSYNTHESIS
EXPDTA X-RAY DIFFRACTION
AUTHOR E.S.BURGIE,C.A.BINGMAN,G.N.PHILLIPS JR.,CENTER FOR AUTHOR 2 EUKARYOTIC STRUCTURAL GENOMICS (CESG)
REVDAT 2 18-AUG-09 3H7C 1 AUTHOR KEYWDS REVDAT 1 26-MAY-09 3H7C 0
JRNL AUTH E.S.BURGIE,C.A.BINGMAN,G.N.PHILLIPS JR. JRNL TITL STRUCTURAL INSIGHTS INTO THE CATALYTIC MECHANISM OF JRNL TITL 2 ARABIDOPSIS THALIANA AGMATINE DEIMINASE JRNL REF TO BE PUBLISHED JRNL REFN
REMARK 1
REMARK 2 REMARK 2 RESOLUTION. 1.50 ANGSTROMS.
REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0066 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 68375 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.147 REMARK 3 R VALUE (WORKING SET) : 0.146 REMARK 3 FREE R VALUE : 0.174 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 3460 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.50 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.54 REMARK 3 REFLECTION IN BIN (WORKING SET) : 4702 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 96.97 REMARK 3 BIN R VALUE (WORKING SET) : 0.2100 REMARK 3 BIN FREE R VALUE SET COUNT : 225 REMARK 3 BIN FREE R VALUE : 0.2400 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3073 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 30 REMARK 3 SOLVENT ATOMS : 372 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 14.69 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.41000 REMARK 3 B22 (A**2) : 0.65000 REMARK 3 B33 (A**2) : -0.34000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -0.37000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.058 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.062 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.034 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 0.884 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.968 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.955 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3187 ; 0.017 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4347 ; 1.630 ; 1.939 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 405 ; 7.044 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 161 ;35.777 ;24.099 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 520 ;13.184 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 26 ;18.289 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 450 ; 0.131 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2547 ; 0.018 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1950 ; 1.541 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3170 ; 2.519 ; 2.000 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1237 ; 3.598 ; 3.000 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1177 ; 5.677 ; 4.500 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE REMARK 3 RIDING POSITIONS U VALUES : REFINED INDIVIDUALLY
REMARK 4 REMARK 4 3H7C COMPLIES WITH FORMAT V. 3.20, 01-DEC-08
REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 04-MAY-09. REMARK 100 THE RCSB ID CODE IS RCSB052783.
REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 06-APR-09 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 23-ID-D REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.96350,0.97943,0.97957 REMARK 200 MONOCHROMATOR : SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 300 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 68398 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.500 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 7.500 REMARK 200 R MERGE (I) : 0.09800 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 19.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.53 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 6.70 REMARK 200 R MERGE FOR SHELL (I) : 0.44400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 4.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: PHENIX.AUTOSOL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL
REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 50.97 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.51 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PROTEIN SOLUTION- 10 MG/ML AGMATINE REMARK 280 DEIMINASE, 50 MM NACL, 0.3 MM TCEP, 5 MM HEPES, PH 7.0; REMARK 280 PRECIPITANT SOLUTION- 34% POLYETHYLENE GLYCOL 2000, 200 MM REMARK 280 KBR, 100 MM TRIETHANOLAMINE, PH 7.5; CRYOPROTECTANT- MITEGEN REMARK 280 LV CRYO OIL, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K
REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 61.85750 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 34.96600 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 61.85750 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 34.96600 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL
REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: BIOLOGICAL UNIT IS THE SAME AS ASYMMETRIC UNIT.
REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: X REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000
REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 PRO X 105 REMARK 465 VAL X 106 REMARK 465 LYS X 107 REMARK 465 LEU X 108 REMARK 465 SER X 109 REMARK 465 SER X 110 REMARK 465 LEU X 111 REMARK 465 SER X 377 REMARK 465 VAL X 378 REMARK 465 ALA X 379 REMARK 465 GLU X 380 REMARK 465 ASN X 381 REMARK 465 GLY X 382 REMARK 465 HIS X 383
REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 NH2 ARG X 154 O PRO X 329 1556 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG X 154 NE - CZ - NH1 ANGL. DEV. = 3.7 DEGREES REMARK 500 ARG X 154 NE - CZ - NH1 ANGL. DEV. = 3.7 DEGREES REMARK 500 ARG X 154 NE - CZ - NH2 ANGL. DEV. = -3.3 DEGREES REMARK 500 ARG X 154 NE - CZ - NH2 ANGL. DEV. = -4.1 DEGREES REMARK 500 ARG X 331 NE - CZ - NH2 ANGL. DEV. = -4.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU X 31 -31.63 -157.50 REMARK 500 SER X 90 60.91 -118.12 REMARK 500 ASN X 123 31.27 -145.94 REMARK 500 ARG X 186 -84.27 -110.76 REMARK 500 REMARK 500 REMARK: NULL
REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 1PE X 391
REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA X 387 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ARG X 73 O REMARK 620 2 LYS X 74 O 76.1 REMARK 620 3 LEU X 76 O 77.7 96.9 REMARK 620 4 HOH X 723 O 78.9 152.7 88.5 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG X 386 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 TRP X 120 O REMARK 620 2 HOH X 606 O 94.1 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 K X 389 K REMARK 620 N RES CSSEQI ATOM REMARK 620 1 TRP X 125 O REMARK 620 2 ASP X 130 O 79.1 REMARK 620 3 ASP X 220 O 90.6 135.9 REMARK 620 4 HOH X 710 O 150.8 90.1 115.2 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA X 388 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 1PE X 391 OH4 REMARK 620 2 1PE X 391 OH5 60.1 REMARK 620 3 1PE X 391 OH3 64.9 108.8 REMARK 620 N 1 2
REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL X 384 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL X 385 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG X 386 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA X 387 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA X 388 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE K X 389 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 211 X 390 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 1PE X 391
REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: GO.24674 RELATED DB: TARGETDB
REMARK 999 REMARK 999 SEQUENCE REMARK 999 AUTHORS STATE THAT THE SEQUENCE MATCHES GENBANK ENTRY REMARK 999 AAO63405.1. THE DISCREPANCY BETWEEN AUTHOR'S SEQUENCE AND THE REMARK 999 SEQUENCE LISTED IN UNIPROT IS A KNOWN "SEQUENCE CONFLICT". THIS REMARK 999 IS DOCUMENTED ON THE UNIPROT WEBSITE AT HTTP://WWW.UNIPROT.ORG/ REMARK 999 UNIPROT/Q8GWW7. AT THE WEBSITE TWO INDEPENDENT REFERENCES ARE REMARK 999 PROVIDED. FURTHERMORE, AUTHOR'S ELECTRON DENSITY SHOWS NO SIGN REMARK 999 OF ASPARTATE AT THIS POSITION. THIS SEQUENCE IS LIKELY JUST A REMARK 999 NATURAL VARIATION, AND WAS NOT PRODUCED BY SITE-DIRECTED REMARK 999 MUTAGENSIS.
DBREF 3H7C X 2 383 UNP Q8GWW7 AGUA_ARATH 2 383
SEQADV 3H7C SER X 1 UNP Q8GWW7 EXPRESSION TAG SEQADV 3H7C GLY X 49 UNP Q8GWW7 ASP 49 SEE REMARK 999
SEQRES 1 X 383 SER GLU GLU SER ARG GLU SER PRO ALA GLU HIS GLY TYR SEQRES 2 X 383 TYR MSE PRO ALA GLU TRP ASP SER HIS ALA GLN THR TRP SEQRES 3 X 383 ILE GLY TRP PRO GLU ARG GLN ASP ASN TRP ARG HIS ASN SEQRES 4 X 383 ALA LEU PRO ALA GLN ARG VAL PHE ALA GLY VAL ALA LYS SEQRES 5 X 383 ALA ILE SER LYS PHE GLU PRO VAL THR VAL CYS ALA SER SEQRES 6 X 383 PRO ALA GLN TRP GLU ASN ALA ARG LYS GLN LEU PRO GLU SEQRES 7 X 383 ASP ILE ARG VAL VAL GLU MSE SER MSE ASN ASP SER TRP SEQRES 8 X 383 PHE ARG ASP SER GLY PRO THR PHE ILE VAL ARG LYS ARG SEQRES 9 X 383 PRO VAL LYS LEU SER SER LEU ASN ARG ASN ILE ALA GLY SEQRES 10 X 383 ILE ASP TRP ASN PHE ASN ALA TRP GLY GLY ALA ASN ASP SEQRES 11 X 383 GLY CYS TYR ASN ASP TRP SER HIS ASP LEU LEU VAL SER SEQRES 12 X 383 ARG LYS ILE LEU ALA LEU GLU ARG ILE PRO ARG PHE GLN SEQRES 13 X 383 HIS SER MSE ILE LEU GLU GLY GLY SER ILE HIS VAL ASP SEQRES 14 X 383 GLY GLU GLY THR CYS LEU VAL THR GLU GLU CYS LEU LEU SEQRES 15 X 383 ASN LYS ASN ARG ASN PRO HIS MSE SER LYS GLU GLN ILE SEQRES 16 X 383 GLU GLU GLU LEU LYS LYS TYR LEU GLY VAL GLN SER PHE SEQRES 17 X 383 ILE TRP LEU PRO ARG GLY LEU TYR GLY ASP GLU ASP THR SEQRES 18 X 383 ASN GLY HIS ILE ASP ASN MSE CYS CYS PHE ALA ARG PRO SEQRES 19 X 383 GLY VAL VAL LEU LEU SER TRP THR ASP ASP GLU THR ASP SEQRES 20 X 383 PRO GLN TYR GLU ARG SER VAL GLU ALA LEU SER VAL LEU SEQRES 21 X 383 SER ASN SER ILE ASP ALA ARG GLY ARG LYS ILE GLN VAL SEQRES 22 X 383 ILE LYS LEU TYR ILE PRO GLU PRO LEU TYR MSE THR GLU SEQRES 23 X 383 GLU GLU SER SER GLY ILE THR GLN ASP GLY GLU ALA ILE SEQRES 24 X 383 PRO ARG LEU ALA GLY THR ARG LEU ALA ALA SER TYR VAL SEQRES 25 X 383 ASN PHE TYR ILE ALA ASN GLY GLY ILE ILE ALA PRO GLN SEQRES 26 X 383 PHE GLY ASP PRO ILE ARG ASP LYS GLU ALA ILE ARG VAL SEQRES 27 X 383 LEU SER ASP THR PHE PRO HIS HIS SER VAL VAL GLY ILE SEQRES 28 X 383 GLU ASN ALA ARG GLU ILE VAL LEU ALA GLY GLY ASN ILE SEQRES 29 X 383 HIS CYS ILE THR GLN GLN GLN PRO ALA GLU PRO THR SER SEQRES 30 X 383 VAL ALA GLU ASN GLY HIS
MODRES 3H7C MSE X 15 MET SELENOMETHIONINE MODRES 3H7C MSE X 85 MET SELENOMETHIONINE MODRES 3H7C MSE X 87 MET SELENOMETHIONINE MODRES 3H7C MSE X 159 MET SELENOMETHIONINE MODRES 3H7C MSE X 190 MET SELENOMETHIONINE MODRES 3H7C MSE X 228 MET SELENOMETHIONINE MODRES 3H7C MSE X 284 MET SELENOMETHIONINE
HET MSE X 15 8 HET MSE X 85 8 HET MSE X 87 8 HET MSE X 159 16 HET MSE X 190 8 HET MSE X 228 8 HET MSE X 284 8 HET CL X 384 1 HET CL X 385 1 HET MG X 386 1 HET NA X 387 1 HET NA X 388 1 HET K X 389 1 HET 211 X 390 10 HET 1PE X 391 14
HETNAM MSE SELENOMETHIONINE HETNAM CL CHLORIDE ION HETNAM MG MAGNESIUM ION HETNAM NA SODIUM ION HETNAM K POTASSIUM ION HETNAM 211 2,2',2''-NITRILOTRIETHANOL HETNAM 1PE PENTAETHYLENE GLYCOL
HETSYN 1PE PEG400
FORMUL 1 MSE 7(C5 H11 N O2 SE) FORMUL 2 CL 2(CL 1-) FORMUL 4 MG MG 2+ FORMUL 5 NA 2(NA 1+) FORMUL 7 K K 1+ FORMUL 8 211 C6 H15 N O3 FORMUL 9 1PE C10 H22 O6 FORMUL 10 HOH *362(H2 O)
HELIX 1 1 PRO X 8 GLY X 12 5 5 HELIX 2 2 ARG X 37 ASN X 39 5 3 HELIX 3 3 ALA X 40 LYS X 56 1 17 HELIX 4 4 SER X 65 ALA X 67 5 3 HELIX 5 5 GLN X 68 LEU X 76 1 9 HELIX 6 6 TRP X 91 GLY X 96 1 6 HELIX 7 7 GLY X 126 GLY X 131 1 6 HELIX 8 8 HIS X 138 LEU X 140 5 3 HELIX 9 9 LEU X 141 ARG X 151 1 11 HELIX 10 10 GLU X 162 GLY X 164 5 3 HELIX 11 11 GLU X 178 LEU X 182 1 5 HELIX 12 12 SER X 191 GLY X 204 1 14 HELIX 13 13 ASP X 218 ASN X 222 5 5 HELIX 14 14 HIS X 224 ASN X 227 5 4 HELIX 15 15 PRO X 248 ASN X 262 1 15 HELIX 16 16 THR X 285 GLY X 291 1 7 HELIX 17 17 ILE X 330 PHE X 343 1 14 HELIX 18 18 ALA X 354 LEU X 359 1 6 HELIX 19 19 ASN X 363 ILE X 367 1 5
SHEET 1 A 4 ARG X 81 GLU X 84 0 SHEET 2 A 4 VAL X 60 ALA X 64 1 N VAL X 62 O ARG X 81 SHEET 3 A 4 HIS X 22 ILE X 27 1 N ILE X 27 O CYS X 63 SHEET 4 A 4 THR X 368 PRO X 372 -1 O GLN X 371 N ALA X 23 SHEET 1 B 3 THR X 98 VAL X 101 0 SHEET 2 B 3 ILE X 115 ASN X 121 -1 O ALA X 116 N ILE X 100 SHEET 3 B 3 ARG X 154 ILE X 160 1 O PHE X 155 N ASP X 119 SHEET 1 C 3 ILE X 166 VAL X 168 0 SHEET 2 C 3 THR X 173 THR X 177 -1 O LEU X 175 N HIS X 167 SHEET 3 C 3 SER X 207 LEU X 211 1 O LEU X 211 N VAL X 176 SHEET 1 D 3 CYS X 229 ARG X 233 0 SHEET 2 D 3 VAL X 236 TRP X 241 -1 O VAL X 236 N ALA X 232 SHEET 3 D 3 GLN X 272 TYR X 277 1 O ILE X 274 N VAL X 237 SHEET 1 E 3 TYR X 315 ALA X 317 0 SHEET 2 E 3 GLY X 320 PRO X 324 -1 O ILE X 322 N TYR X 315 SHEET 3 E 3 SER X 347 ILE X 351 1 O VAL X 349 N ILE X 321
LINK C TYR X 14 N MSE X 15 1555 1555 1.32 LINK C MSE X 15 N PRO X 16 1555 1555 1.33 LINK C GLU X 84 N MSE X 85 1555 1555 1.33 LINK C MSE X 85 N SER X 86 1555 1555 1.33 LINK C SER X 86 N MSE X 87 1555 1555 1.33 LINK C MSE X 87 N ASN X 88 1555 1555 1.33 LINK C SER X 158 N AMSE X 159 1555 1555 1.33 LINK C SER X 158 N BMSE X 159 1555 1555 1.34 LINK C AMSE X 159 N ILE X 160 1555 1555 1.33 LINK C BMSE X 159 N ILE X 160 1555 1555 1.33 LINK C HIS X 189 N MSE X 190 1555 1555 1.34 LINK C MSE X 190 N SER X 191 1555 1555 1.33 LINK C AASN X 227 N MSE X 228 1555 1555 1.38 LINK C BASN X 227 N MSE X 228 1555 1555 1.31 LINK C MSE X 228 N CYS X 229 1555 1555 1.32 LINK C TYR X 283 N MSE X 284 1555 1555 1.34 LINK C MSE X 284 N THR X 285 1555 1555 1.32 LINK O ARG X 73 NA NA X 387 1555 1555 2.77 LINK O LYS X 74 NA NA X 387 1555 1555 2.98 LINK O LEU X 76 NA NA X 387 1555 1555 2.49 LINK O TRP X 120 MG MG X 386 1555 1555 2.40 LINK O TRP X 125 K K X 389 1555 1555 2.47 LINK O ASP X 130 K K X 389 1555 1555 2.72 LINK O ASP X 220 K K X 389 1555 1555 2.69 LINK MG MG X 386 O HOH X 606 1555 1555 2.38 LINK NA NA X 387 O HOH X 723 1555 1555 2.78 LINK NA NA X 388 OH4 1PE X 391 1555 1555 2.84 LINK NA NA X 388 OH5 1PE X 391 1555 1555 2.78 LINK NA NA X 388 OH3 1PE X 391 1555 1555 2.71 LINK K K X 389 O HOH X 710 1555 1555 2.68
SITE 1 AC1 2 LYS X 52 GLY X 350 SITE 1 AC2 2 ARG X 144 ARG X 154 SITE 1 AC3 6 ASP X 119 TRP X 120 SER X 143 HOH X 461 SITE 2 AC3 6 HOH X 581 HOH X 606 SITE 1 AC4 6 ARG X 73 LYS X 74 LEU X 76 HOH X 480 SITE 2 AC4 6 HOH X 493 HOH X 723 SITE 1 AC5 1 1PE X 391 SITE 1 AC6 6 TRP X 125 ASP X 130 ASP X 220 ASN X 222 SITE 2 AC6 6 HOH X 555 HOH X 710 SITE 1 AC7 12 ASN X 35 TRP X 91 ASP X 94 TRP X 125 SITE 2 AC7 12 CYS X 132 ASP X 220 THR X 221 ARG X 301 SITE 3 AC7 12 ALA X 360 GLY X 361 HOH X 526 HOH X 558 SITE 1 AC8 6 ASP X 265 TYR X 283 MSE X 284 GLU X 286 SITE 2 AC8 6 GLY X 304 NA X 388
CRYST1 123.715 69.932 50.917 90.00 98.40 90.00 C 1 2 1 4
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 0.008083 0.000000 0.001193 0.00000
SCALE2 0.000000 0.014300 0.000000 0.00000
SCALE3 0.000000 0.000000 0.019853 0.00000