3H69 - Header Asymmetric Unit

HEADER HYDROLASE 23-APR-09 3H69

TITLE CATALYTIC DOMAIN OF HUMAN SERINE/THREONINE PHOSPHATASE 5 TITLE 2 (PP5C) WITH TWO ZN2+ ATOMS COMPLEXED WITH ENDOTHALL

COMPND MOL_ID: 1; COMPND 2 MOLECULE: SERINE/THREONINE-PROTEIN PHOSPHATASE 5; COMPND 3 CHAIN: A, D; COMPND 4 FRAGMENT: CATALYTIC DOMAIN, RESIDUES 176-490; COMPND 5 SYNONYM: PP5C, PP5, PROTEIN PHOSPHATASE T, PP-T, PPT; COMPND 6 EC: 3.1.3.16; COMPND 7 ENGINEERED: YES

SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: PPP5C, PPP5; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3)RIPL; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PDEST30

KEYWDS METALLOENZYME, PHOSPHATASE, INHIBITORS, DRUG DESIGN, KEYWDS 2 CYTOPLASM, HYDROLASE, IRON, MANGANESE, METAL-BINDING, KEYWDS 3 NUCLEUS, PROTEIN PHOSPHATASE, TPR REPEAT

EXPDTA X-RAY DIFFRACTION

AUTHOR I.BERTINI,V.CALDERONE,M.FRAGAI,C.LUCHINAT,E.TALLURI

REVDAT 1 29-SEP-09 3H69 0

JRNL AUTH I.BERTINI,V.CALDERONE,M.FRAGAI,C.LUCHINAT,E.TALLURI JRNL TITL STRUCTURAL BASIS OF SERINE/THREONINE PHOSPHATASE JRNL TITL 2 INHIBITION BY THE ARCHETYPAL SMALL MOLECULES JRNL TITL 3 CANTHARIDIN AND NORCANTHARIDIN JRNL REF J.MED.CHEM. V. 52 4838 2009 JRNL REFN ISSN 0022-2623 JRNL PMID 19601647 JRNL DOI 10.1021/JM900610K

REMARK 1

REMARK 2 REMARK 2 RESOLUTION. 2.10 ANGSTROMS.

REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.4.0067 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 38.32 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 35988 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.168 REMARK 3 R VALUE (WORKING SET) : 0.162 REMARK 3 FREE R VALUE : 0.227 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 9.100 REMARK 3 FREE R VALUE TEST SET COUNT : 3585 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.10 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.15 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2599 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.00 REMARK 3 BIN R VALUE (WORKING SET) : 0.1980 REMARK 3 BIN FREE R VALUE SET COUNT : 252 REMARK 3 BIN FREE R VALUE : 0.2760 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5056 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 36 REMARK 3 SOLVENT ATOMS : 341 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 21.00 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 24.97 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.13000 REMARK 3 B22 (A**2) : -1.86000 REMARK 3 B33 (A**2) : 2.45000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 2.86000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.216 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.191 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.130 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 4.899 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.961 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.921 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 5218 ; 0.026 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 7064 ; 2.299 ; 1.962 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 628 ; 7.113 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 256 ;36.854 ;24.688 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 894 ;17.411 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 22 ;21.195 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 754 ; 0.152 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4010 ; 0.011 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 3132 ; 1.271 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 5064 ; 2.185 ; 2.000 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2086 ; 3.911 ; 3.000 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 2000 ; 6.074 ; 4.500 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE REMARK 3 RIDING POSITIONS

REMARK 4 REMARK 4 3H69 COMPLIES WITH FORMAT V. 3.20, 01-DEC-08

REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 12-MAY-09. REMARK 100 THE RCSB ID CODE IS RCSB052744.

REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 25-OCT-08 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID23-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.98340 REMARK 200 MONOCHROMATOR : SI 111 CHANNEL REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 39575 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.100 REMARK 200 RESOLUTION RANGE LOW (A) : 40.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 6.500 REMARK 200 R MERGE (I) : 0.11400 REMARK 200 R SYM (I) : 0.11400 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 16.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.21 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 4.90 REMARK 200 R MERGE FOR SHELL (I) : 0.35800 REMARK 200 R SYM FOR SHELL (I) : 0.35800 REMARK 200 <I/SIGMA(I)> FOR SHELL : 3.300 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 1S95 REMARK 200 REMARK 200 REMARK: NULL

REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.63 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.35 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 10MM TRIS-HCL, 40% MPD, 20% PEG MME REMARK 280 5000, PH 8.0, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 289K

REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 77.26750 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 20.88900 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 77.26750 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 20.88900 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL

REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA.

REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000

REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 4 O HOH A 579 1.84 REMARK 500 NE ARG D 441 O HOH D 562 1.90 REMARK 500 OE2 GLU A 233 O HOH A 557 2.12 REMARK 500 O GLU A 233 O HOH A 571 2.14 REMARK 500 O HOH D 2 O HOH D 562 2.17 REMARK 500 O HOH A 1 O HOH A 148 2.18 REMARK 500 NZ LYS A 412 OE2 GLU A 416 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 86 O HOH A 518 4544 2.13 REMARK 500 O HOH D 83 O HOH D 563 4545 2.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLN A 311 CG GLN A 311 CD 0.152 REMARK 500 GLU A 358 CG GLU A 358 CD 0.211 REMARK 500 GLU A 358 CD GLU A 358 OE1 0.069 REMARK 500 GLU A 358 CD GLU A 358 OE2 0.068 REMARK 500 GLU D 358 CB GLU D 358 CG 0.130 REMARK 500 GLU D 358 CG GLU D 358 CD 0.173 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG D 425 NE - CZ - NH1 ANGL. DEV. = -3.1 DEGREES REMARK 500 ARG D 441 NE - CZ - NH2 ANGL. DEV. = -3.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLN A 201 34.94 73.07 REMARK 500 ASN A 269 56.00 -90.78 REMARK 500 ASP A 274 149.06 81.30 REMARK 500 ARG A 275 -64.93 78.18 REMARK 500 TYR A 323 -112.37 -122.27 REMARK 500 LEU A 355 -158.63 -92.03 REMARK 500 SER A 403 -160.01 54.76 REMARK 500 SER A 426 -127.55 -143.66 REMARK 500 HIS A 427 -10.66 76.28 REMARK 500 GLN A 454 -35.94 -135.39 REMARK 500 ASP A 468 107.65 -161.18 REMARK 500 MET A 487 14.35 58.56 REMARK 500 ASP D 183 36.62 81.51 REMARK 500 GLN D 201 32.67 76.10 REMARK 500 SER D 261 -176.37 -177.91 REMARK 500 ASP D 274 153.30 78.71 REMARK 500 ARG D 275 -56.51 76.11 REMARK 500 HIS D 296 12.76 -140.38 REMARK 500 GLU D 305 58.48 -93.22 REMARK 500 ASN D 308 -65.62 -24.10 REMARK 500 TYR D 323 -129.87 -130.21 REMARK 500 LEU D 355 -158.04 -81.07 REMARK 500 SER D 403 -158.87 60.17 REMARK 500 SER D 426 -126.17 -127.09 REMARK 500 HIS D 427 -1.94 77.25 REMARK 500 ASN D 450 61.42 36.22 REMARK 500 GLN D 454 -20.52 -142.82 REMARK 500 ASP D 468 101.84 -163.95 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CHIRAL CENTERS REMARK 500 REMARK 500 UNEXPECTED CONFIGURATION OF THE FOLLOWING CHIRAL REMARK 500 CENTER(S) USING IMPROPER CA--C--CB--N CHIRALITY REMARK 500 M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (11X,I3,1X,A3,1X,A1,I4,A1,6X,F5.1,6X,A1,10X,A1,3X,A16) REMARK 500 REMARK 500 M RES CSSEQI IMPROPER EXPECTED FOUND DETAILS REMARK 500 GLU A 233 23.0 L L OUTSIDE RANGE REMARK 500 ASP A 364 24.8 L L OUTSIDE RANGE REMARK 500 REMARK 500 REMARK: NULL

REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 501 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 242 OD2 REMARK 620 2 HIS A 244 NE2 108.8 REMARK 620 3 ASP A 271 OD2 87.0 102.4 REMARK 620 4 ENL A 0 O4 85.5 165.4 80.7 REMARK 620 5 ENL A 0 O2 84.6 96.1 161.3 82.0 REMARK 620 6 ENL A 0 O2 90.1 87.6 170.0 89.6 9.0 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 500 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASN A 303 OD1 REMARK 620 2 HIS A 352 NE2 94.2 REMARK 620 3 HIS A 427 ND1 99.7 97.1 REMARK 620 4 ENL A 0 O3 89.1 168.7 71.7 REMARK 620 5 ENL A 0 O4 134.9 126.5 94.0 55.1 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN D 501 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP D 242 OD2 REMARK 620 2 HIS D 244 NE2 114.9 REMARK 620 3 ASP D 271 OD2 93.5 101.8 REMARK 620 4 ENL D 0 O4 81.8 159.8 87.5 REMARK 620 5 ENL D 0 O2 88.1 91.3 164.6 77.5 REMARK 620 6 ENL D 0 O2 87.2 92.1 164.2 77.0 1.0 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN D 500 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASN D 303 OD1 REMARK 620 2 HIS D 352 NE2 86.0 REMARK 620 3 HIS D 427 ND1 94.2 95.4 REMARK 620 4 ENL D 0 O3 84.9 170.0 81.0 REMARK 620 5 ENL D 0 O4 145.7 125.9 94.6 63.9 REMARK 620 N 1 2 3 4

REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 500 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 501 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ENL A 0 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN D 500 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN D 501 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ENL D 0

REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3H60 RELATED DB: PDB REMARK 900 RELATED ID: 3H61 RELATED DB: PDB REMARK 900 RELATED ID: 3H62 RELATED DB: PDB REMARK 900 RELATED ID: 3H63 RELATED DB: PDB REMARK 900 RELATED ID: 3H64 RELATED DB: PDB REMARK 900 RELATED ID: 3H66 RELATED DB: PDB REMARK 900 RELATED ID: 3H67 RELATED DB: PDB REMARK 900 RELATED ID: 3H68 RELATED DB: PDB

DBREF 3H69 A 176 490 UNP P53041 PPP5_HUMAN 176 490 DBREF 3H69 D 176 490 UNP P53041 PPP5_HUMAN 176 490

SEQRES 1 A 315 TYR SER GLY PRO LYS LEU GLU ASP GLY LYS VAL THR ILE SEQRES 2 A 315 SER PHE MET LYS GLU LEU MET GLN TRP TYR LYS ASP GLN SEQRES 3 A 315 LYS LYS LEU HIS ARG LYS CYS ALA TYR GLN ILE LEU VAL SEQRES 4 A 315 GLN VAL LYS GLU VAL LEU SER LYS LEU SER THR LEU VAL SEQRES 5 A 315 GLU THR THR LEU LYS GLU THR GLU LYS ILE THR VAL CYS SEQRES 6 A 315 GLY ASP THR HIS GLY GLN PHE TYR ASP LEU LEU ASN ILE SEQRES 7 A 315 PHE GLU LEU ASN GLY LEU PRO SER GLU THR ASN PRO TYR SEQRES 8 A 315 ILE PHE ASN GLY ASP PHE VAL ASP ARG GLY SER PHE SER SEQRES 9 A 315 VAL GLU VAL ILE LEU THR LEU PHE GLY PHE LYS LEU LEU SEQRES 10 A 315 TYR PRO ASP HIS PHE HIS LEU LEU ARG GLY ASN HIS GLU SEQRES 11 A 315 THR ASP ASN MET ASN GLN ILE TYR GLY PHE GLU GLY GLU SEQRES 12 A 315 VAL LYS ALA LYS TYR THR ALA GLN MET TYR GLU LEU PHE SEQRES 13 A 315 SER GLU VAL PHE GLU TRP LEU PRO LEU ALA GLN CYS ILE SEQRES 14 A 315 ASN GLY LYS VAL LEU ILE MET HIS GLY GLY LEU PHE SER SEQRES 15 A 315 GLU ASP GLY VAL THR LEU ASP ASP ILE ARG LYS ILE GLU SEQRES 16 A 315 ARG ASN ARG GLN PRO PRO ASP SER GLY PRO MET CYS ASP SEQRES 17 A 315 LEU LEU TRP SER ASP PRO GLN PRO GLN ASN GLY ARG SER SEQRES 18 A 315 ILE SER LYS ARG GLY VAL SER CYS GLN PHE GLY PRO ASP SEQRES 19 A 315 VAL THR LYS ALA PHE LEU GLU GLU ASN ASN LEU ASP TYR SEQRES 20 A 315 ILE ILE ARG SER HIS GLU VAL LYS ALA GLU GLY TYR GLU SEQRES 21 A 315 VAL ALA HIS GLY GLY ARG CYS VAL THR VAL PHE SER ALA SEQRES 22 A 315 PRO ASN TYR CYS ASP GLN MET GLY ASN LYS ALA SER TYR SEQRES 23 A 315 ILE HIS LEU GLN GLY SER ASP LEU ARG PRO GLN PHE HIS SEQRES 24 A 315 GLN PHE THR ALA VAL PRO HIS PRO ASN VAL LYS PRO MET SEQRES 25 A 315 ALA TYR ALA SEQRES 1 D 315 TYR SER GLY PRO LYS LEU GLU ASP GLY LYS VAL THR ILE SEQRES 2 D 315 SER PHE MET LYS GLU LEU MET GLN TRP TYR LYS ASP GLN SEQRES 3 D 315 LYS LYS LEU HIS ARG LYS CYS ALA TYR GLN ILE LEU VAL SEQRES 4 D 315 GLN VAL LYS GLU VAL LEU SER LYS LEU SER THR LEU VAL SEQRES 5 D 315 GLU THR THR LEU LYS GLU THR GLU LYS ILE THR VAL CYS SEQRES 6 D 315 GLY ASP THR HIS GLY GLN PHE TYR ASP LEU LEU ASN ILE SEQRES 7 D 315 PHE GLU LEU ASN GLY LEU PRO SER GLU THR ASN PRO TYR SEQRES 8 D 315 ILE PHE ASN GLY ASP PHE VAL ASP ARG GLY SER PHE SER SEQRES 9 D 315 VAL GLU VAL ILE LEU THR LEU PHE GLY PHE LYS LEU LEU SEQRES 10 D 315 TYR PRO ASP HIS PHE HIS LEU LEU ARG GLY ASN HIS GLU SEQRES 11 D 315 THR ASP ASN MET ASN GLN ILE TYR GLY PHE GLU GLY GLU SEQRES 12 D 315 VAL LYS ALA LYS TYR THR ALA GLN MET TYR GLU LEU PHE SEQRES 13 D 315 SER GLU VAL PHE GLU TRP LEU PRO LEU ALA GLN CYS ILE SEQRES 14 D 315 ASN GLY LYS VAL LEU ILE MET HIS GLY GLY LEU PHE SER SEQRES 15 D 315 GLU ASP GLY VAL THR LEU ASP ASP ILE ARG LYS ILE GLU SEQRES 16 D 315 ARG ASN ARG GLN PRO PRO ASP SER GLY PRO MET CYS ASP SEQRES 17 D 315 LEU LEU TRP SER ASP PRO GLN PRO GLN ASN GLY ARG SER SEQRES 18 D 315 ILE SER LYS ARG GLY VAL SER CYS GLN PHE GLY PRO ASP SEQRES 19 D 315 VAL THR LYS ALA PHE LEU GLU GLU ASN ASN LEU ASP TYR SEQRES 20 D 315 ILE ILE ARG SER HIS GLU VAL LYS ALA GLU GLY TYR GLU SEQRES 21 D 315 VAL ALA HIS GLY GLY ARG CYS VAL THR VAL PHE SER ALA SEQRES 22 D 315 PRO ASN TYR CYS ASP GLN MET GLY ASN LYS ALA SER TYR SEQRES 23 D 315 ILE HIS LEU GLN GLY SER ASP LEU ARG PRO GLN PHE HIS SEQRES 24 D 315 GLN PHE THR ALA VAL PRO HIS PRO ASN VAL LYS PRO MET SEQRES 25 D 315 ALA TYR ALA

HET ZN A 500 1 HET ZN A 501 1 HET ENL A 0 16 HET ZN D 500 1 HET ZN D 501 1 HET ENL D 0 16

HETNAM ZN ZINC ION HETNAM ENL (1R,2S,3R,4S)-7-OXABICYCLO[2.2.1]HEPTANE-2,3- HETNAM 2 ENL DICARBOXYLIC ACID

HETSYN ENL ENDOTHALL

FORMUL 3 ZN 4(ZN 2+) FORMUL 5 ENL 2(C8 H10 O5) FORMUL 9 HOH *341(H2 O)

HELIX 1 1 THR A 187 ASP A 200 1 14 HELIX 2 2 HIS A 205 LYS A 222 1 18 HELIX 3 3 GLN A 246 GLY A 258 1 13 HELIX 4 4 PHE A 278 TYR A 293 1 16 HELIX 5 5 THR A 306 GLY A 314 1 9 HELIX 6 6 GLY A 314 TYR A 323 1 10 HELIX 7 7 THR A 324 GLU A 336 1 13 HELIX 8 8 THR A 362 LYS A 368 1 7 HELIX 9 9 GLY A 379 SER A 387 1 9 HELIX 10 10 GLY A 407 ASN A 418 1 12 HELIX 11 11 HIS A 438 GLY A 440 5 3 HELIX 12 12 ASN A 450 GLN A 454 5 5 HELIX 13 13 THR D 187 ASP D 200 1 14 HELIX 14 14 HIS D 205 LYS D 222 1 18 HELIX 15 15 GLN D 246 GLY D 258 1 13 HELIX 16 16 PHE D 278 TYR D 293 1 16 HELIX 17 17 THR D 306 GLY D 314 1 9 HELIX 18 18 GLY D 314 TYR D 323 1 10 HELIX 19 19 THR D 324 GLU D 336 1 13 HELIX 20 20 THR D 362 LYS D 368 1 7 HELIX 21 21 GLY D 379 SER D 387 1 9 HELIX 22 22 GLY D 407 ASN D 418 1 12 HELIX 23 23 ASN D 450 GLN D 454 5 5

SHEET 1 A 6 LEU A 226 THR A 229 0 SHEET 2 A 6 ALA A 341 ILE A 344 1 O CYS A 343 N VAL A 227 SHEET 3 A 6 VAL A 348 ILE A 350 -1 O VAL A 348 N ILE A 344 SHEET 4 A 6 TYR A 422 ARG A 425 1 O ILE A 424 N LEU A 349 SHEET 5 A 6 CYS A 442 VAL A 445 1 O VAL A 443 N ILE A 423 SHEET 6 A 6 TYR A 434 ALA A 437 -1 N ALA A 437 O CYS A 442 SHEET 1 B 5 PHE A 297 LEU A 300 0 SHEET 2 B 5 TYR A 266 ASN A 269 1 N PHE A 268 O HIS A 298 SHEET 3 B 5 LYS A 236 CYS A 240 1 N CYS A 240 O ASN A 269 SHEET 4 B 5 ALA A 459 GLN A 465 -1 O ILE A 462 N VAL A 239 SHEET 5 B 5 ASP A 468 PHE A 476 -1 O PHE A 476 N ALA A 459 SHEET 1 C 3 ASP A 388 PRO A 389 0 SHEET 2 C 3 CYS A 404 PHE A 406 1 O PHE A 406 N ASP A 388 SHEET 3 C 3 ARG A 395 ILE A 397 -1 N SER A 396 O GLN A 405 SHEET 1 D 6 LEU D 226 THR D 229 0 SHEET 2 D 6 ALA D 341 ILE D 344 1 O CYS D 343 N VAL D 227 SHEET 3 D 6 VAL D 348 MET D 351 -1 O VAL D 348 N ILE D 344 SHEET 4 D 6 TYR D 422 ARG D 425 1 O ILE D 424 N LEU D 349 SHEET 5 D 6 CYS D 442 VAL D 445 1 O VAL D 443 N ARG D 425 SHEET 6 D 6 TYR D 434 ALA D 437 -1 N ALA D 437 O CYS D 442 SHEET 1 E 5 PHE D 297 LEU D 300 0 SHEET 2 E 5 TYR D 266 ASN D 269 1 N TYR D 266 O HIS D 298 SHEET 3 E 5 LYS D 236 CYS D 240 1 N CYS D 240 O ILE D 267 SHEET 4 E 5 ALA D 459 GLN D 465 -1 O ILE D 462 N VAL D 239 SHEET 5 E 5 ASP D 468 PHE D 476 -1 O PHE D 476 N ALA D 459 SHEET 1 F 3 ASP D 388 PRO D 389 0 SHEET 2 F 3 CYS D 404 PHE D 406 1 O CYS D 404 N ASP D 388 SHEET 3 F 3 ARG D 395 ILE D 397 -1 N SER D 396 O GLN D 405

LINK OD2 ASP A 242 ZN ZN A 501 1555 1555 2.00 LINK NE2 HIS A 244 ZN ZN A 501 1555 1555 2.18 LINK OD2 ASP A 271 ZN ZN A 501 1555 1555 2.13 LINK OD1 ASN A 303 ZN ZN A 500 1555 1555 1.96 LINK NE2 HIS A 352 ZN ZN A 500 1555 1555 2.04 LINK ND1 HIS A 427 ZN ZN A 500 1555 1555 2.08 LINK OD2 ASP D 242 ZN ZN D 501 1555 1555 2.27 LINK NE2 HIS D 244 ZN ZN D 501 1555 1555 2.24 LINK OD2 ASP D 271 ZN ZN D 501 1555 1555 2.06 LINK OD1 ASN D 303 ZN ZN D 500 1555 1555 2.05 LINK NE2 HIS D 352 ZN ZN D 500 1555 1555 2.05 LINK ND1 HIS D 427 ZN ZN D 500 1555 1555 2.13 LINK ZN ZN A 500 O3 ENL A 0 1555 1555 2.39 LINK ZN ZN A 500 O4 ENL A 0 1555 1555 2.02 LINK ZN ZN A 501 O4 ENL A 0 1555 1555 2.29 LINK ZN ZN A 501 O2 AENL A 0 1555 1555 1.85 LINK ZN ZN A 501 O2 BENL A 0 1555 1555 1.91 LINK ZN ZN D 500 O3 ENL D 0 1555 1555 2.11 LINK ZN ZN D 500 O4 ENL D 0 1555 1555 2.11 LINK ZN ZN D 501 O4 ENL D 0 1555 1555 2.40 LINK ZN ZN D 501 O2 AENL D 0 1555 1555 2.08 LINK ZN ZN D 501 O2 BENL D 0 1555 1555 1.96

SITE 1 AC1 6 ENL A 0 ASP A 271 ASN A 303 HIS A 352 SITE 2 AC1 6 HIS A 427 ZN A 501 SITE 1 AC2 5 ENL A 0 ASP A 242 HIS A 244 ASP A 271 SITE 2 AC2 5 ZN A 500 SITE 1 AC3 14 ASP A 242 HIS A 244 ASP A 271 ARG A 275 SITE 2 AC3 14 ASN A 303 HIS A 304 HIS A 352 ARG A 400 SITE 3 AC3 14 HIS A 427 GLU A 428 PHE A 446 TYR A 451 SITE 4 AC3 14 ZN A 500 ZN A 501 SITE 1 AC4 6 ENL D 0 ASP D 271 ASN D 303 HIS D 352 SITE 2 AC4 6 HIS D 427 ZN D 501 SITE 1 AC5 5 ENL D 0 ASP D 242 HIS D 244 ASP D 271 SITE 2 AC5 5 ZN D 500 SITE 1 AC6 14 ASP D 242 HIS D 244 ASP D 271 ARG D 275 SITE 2 AC6 14 ASN D 303 HIS D 304 ARG D 400 HIS D 427 SITE 3 AC6 14 GLU D 428 VAL D 429 PHE D 446 TYR D 451 SITE 4 AC6 14 ZN D 500 ZN D 501

CRYST1 154.535 41.778 105.483 90.00 97.28 90.00 C 1 2 1 8

ORIGX1 1.000000 0.000000 0.000000 0.00000

ORIGX2 0.000000 1.000000 0.000000 0.00000

ORIGX3 0.000000 0.000000 1.000000 0.00000

SCALE1 0.006471 0.000000 0.000827 0.00000

SCALE2 0.000000 0.023936 0.000000 0.00000

SCALE3 0.000000 0.000000 0.009557 0.00000