10 20 30 40 50 60 70 80 3H61 - Header ----|----|----|----|----|----|----|----|----|----|----|----|----|----|----|----| Asymmetric UnitHEADER HYDROLASE 23-APR-09 3H61
TITLE CATALYTIC DOMAIN OF HUMAN SERINE/THREONINE PHOSPHATASE 5 TITLE 2 (PP5C) WITH TWO MN2+ ATOMS ORIGINALLY SOAKED WITH TITLE 3 NORCANTHARIDIN (WHICH IS PRESENT IN THE STRUCTURE IN THE TITLE 4 HYDROLYZED FORM)
COMPND MOL_ID: 1; COMPND 2 MOLECULE: SERINE/THREONINE-PROTEIN PHOSPHATASE 5; COMPND 3 CHAIN: A, D; COMPND 4 FRAGMENT: CATALYTIC DOMAIN, RESIDUES 176-490; COMPND 5 SYNONYM: PP5C, PP5, PROTEIN PHOSPHATASE T, PP-T, PPT; COMPND 6 EC: 3.1.3.16; COMPND 7 ENGINEERED: YES
SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: PPP5C, PPP5; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3)RIPL; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PDEST30
KEYWDS METALLOENZYME, PHOSPHATASE, INHIBITORS, DRUG DESIGN, KEYWDS 2 CYTOPLASM, HYDROLASE, IRON, MANGANESE, METAL-BINDING, KEYWDS 3 NUCLEUS, PROTEIN PHOSPHATASE, TPR REPEAT
EXPDTA X-RAY DIFFRACTION
AUTHOR I.BERTINI,V.CALDERONE,M.FRAGAI,C.LUCHINAT,E.TALLURI
REVDAT 1 29-SEP-09 3H61 0
JRNL AUTH I.BERTINI,V.CALDERONE,M.FRAGAI,C.LUCHINAT,E.TALLURI JRNL TITL STRUCTURAL BASIS OF SERINE/THREONINE PHOSPHATASE JRNL TITL 2 INHIBITION BY THE ARCHETYPAL SMALL MOLECULES JRNL TITL 3 CANTHARIDIN AND NORCANTHARIDIN JRNL REF J.MED.CHEM. V. 52 4838 2009 JRNL REFN ISSN 0022-2623 JRNL PMID 19601647 JRNL DOI 10.1021/JM900610K
REMARK 1
REMARK 2 REMARK 2 RESOLUTION. 1.45 ANGSTROMS.
REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.4.0067 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.45 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 37.50 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 103352 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.164 REMARK 3 R VALUE (WORKING SET) : 0.161 REMARK 3 FREE R VALUE : 0.194 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 9.100 REMARK 3 FREE R VALUE TEST SET COUNT : 10398 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.45 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.49 REMARK 3 REFLECTION IN BIN (WORKING SET) : 7013 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.00 REMARK 3 BIN R VALUE (WORKING SET) : 0.2180 REMARK 3 BIN FREE R VALUE SET COUNT : 700 REMARK 3 BIN FREE R VALUE : 0.2800 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5056 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 30 REMARK 3 SOLVENT ATOMS : 790 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 12.30 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 15.47 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.09000 REMARK 3 B22 (A**2) : -0.10000 REMARK 3 B33 (A**2) : 0.25000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.96000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.082 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.069 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.040 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.229 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.963 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.948 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 5212 ; 0.009 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 7054 ; 1.378 ; 1.961 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 628 ; 6.212 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 256 ;34.952 ;24.688 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 894 ;11.698 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 22 ; 9.275 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 752 ; 0.094 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4002 ; 0.007 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 3132 ; 0.964 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 5064 ; 1.606 ; 2.000 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2080 ; 2.330 ; 3.000 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1990 ; 3.558 ; 4.500 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): 5212 ; 1.321 ; 3.000 REMARK 3 SPHERICITY; FREE ATOMS (A**2): 794 ; 3.451 ; 3.000 REMARK 3 SPHERICITY; BONDED ATOMS (A**2): 5082 ; 2.449 ; 3.000 REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE REMARK 3 RIDING POSITIONS
REMARK 4 REMARK 4 3H61 COMPLIES WITH FORMAT V. 3.20, 01-DEC-08
REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 11-MAY-09. REMARK 100 THE RCSB ID CODE IS RCSB052736.
REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 25-JAN-09 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID23-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97550 REMARK 200 MONOCHROMATOR : SI 111 CHANNEL REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 115060 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.450 REMARK 200 RESOLUTION RANGE LOW (A) : 40.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 2.600 REMARK 200 R MERGE (I) : 0.06300 REMARK 200 R SYM (I) : 0.06300 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 200.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.45 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.53 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 2.20 REMARK 200 R MERGE FOR SHELL (I) : 0.39300 REMARK 200 R SYM FOR SHELL (I) : 0.39300 REMARK 200 <I/SIGMA(I)> FOR SHELL : 3.900 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 1S95 REMARK 200 REMARK 200 REMARK: NULL
REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.87 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.36 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 10MM TRIS-HC, 40% MPD, 20% PEG MME REMARK 280 5000 , PH 8.0, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 289K
REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 77.24950 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 20.89050 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 77.24950 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 20.89050 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL
REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA.
REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000
REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 568 LIES ON A SPECIAL POSITION.
REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH D 26 O HOH D 855 2.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH D 516 O HOH D 855 4546 1.97 REMARK 500 NE2 HIS D 474 O HOH D 820 1565 2.04 REMARK 500 O HOH D 153 O HOH D 855 4546 2.05 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 269 57.10 -95.24 REMARK 500 ASP A 274 155.86 71.08 REMARK 500 ARG A 275 -64.41 75.74 REMARK 500 TYR A 323 -117.00 -129.12 REMARK 500 SER A 403 -159.88 60.31 REMARK 500 SER A 426 -129.50 -131.86 REMARK 500 HIS A 427 -6.93 79.48 REMARK 500 GLN A 454 -33.71 -133.99 REMARK 500 ASP A 468 99.67 -162.55 REMARK 500 ASN D 269 56.40 -95.03 REMARK 500 ASP D 274 158.96 74.93 REMARK 500 ARG D 275 -67.47 70.95 REMARK 500 TYR D 323 -116.68 -122.27 REMARK 500 SER D 403 -155.05 59.71 REMARK 500 SER D 426 -127.91 -132.56 REMARK 500 HIS D 427 -4.66 77.79 REMARK 500 GLN D 454 -37.40 -134.99 REMARK 500 ASP D 468 100.27 -163.43 REMARK 500 REMARK 500 REMARK: NULL
REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 584 DISTANCE = 5.66 ANGSTROMS REMARK 525 HOH A 651 DISTANCE = 5.23 ANGSTROMS REMARK 525 HOH A 707 DISTANCE = 6.62 ANGSTROMS
REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A 501 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 242 OD2 REMARK 620 2 ASP A 271 OD2 93.8 REMARK 620 3 ENL A 0 O2 92.9 76.4 REMARK 620 4 ENL A 0 O4 168.2 93.0 79.3 REMARK 620 5 ENL A 0 O1 87.8 159.3 82.9 82.4 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A 500 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 271 OD2 REMARK 620 2 ASN A 303 OD1 92.9 REMARK 620 3 ENL A 0 O2 76.9 135.6 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN D 501 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP D 242 OD2 REMARK 620 2 ASP D 271 OD2 92.4 REMARK 620 3 ENL D 0 O4 169.9 92.6 REMARK 620 4 ENL D 0 O1 89.4 162.8 83.3 REMARK 620 5 ENL D 0 O2 92.7 77.9 79.9 85.0 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN D 500 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP D 271 OD2 REMARK 620 2 ASN D 303 OD1 90.3 REMARK 620 3 ENL D 0 O2 78.9 136.3 REMARK 620 N 1 2
REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MN A 500 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MN A 501 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ENL A 0 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MN D 500 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MN D 501 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ENL D 0
REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3H60 RELATED DB: PDB REMARK 900 RELATED ID: 3H62 RELATED DB: PDB REMARK 900 RELATED ID: 3H63 RELATED DB: PDB REMARK 900 RELATED ID: 3H64 RELATED DB: PDB REMARK 900 RELATED ID: 3H66 RELATED DB: PDB REMARK 900 RELATED ID: 3H67 RELATED DB: PDB REMARK 900 RELATED ID: 3H68 RELATED DB: PDB REMARK 900 RELATED ID: 3H69 RELATED DB: PDB
DBREF 3H61 A 176 490 UNP P53041 PPP5_HUMAN 176 490 DBREF 3H61 D 176 490 UNP P53041 PPP5_HUMAN 176 490
SEQRES 1 A 315 TYR SER GLY PRO LYS LEU GLU ASP GLY LYS VAL THR ILE SEQRES 2 A 315 SER PHE MET LYS GLU LEU MET GLN TRP TYR LYS ASP GLN SEQRES 3 A 315 LYS LYS LEU HIS ARG LYS CYS ALA TYR GLN ILE LEU VAL SEQRES 4 A 315 GLN VAL LYS GLU VAL LEU SER LYS LEU SER THR LEU VAL SEQRES 5 A 315 GLU THR THR LEU LYS GLU THR GLU LYS ILE THR VAL CYS SEQRES 6 A 315 GLY ASP THR HIS GLY GLN PHE TYR ASP LEU LEU ASN ILE SEQRES 7 A 315 PHE GLU LEU ASN GLY LEU PRO SER GLU THR ASN PRO TYR SEQRES 8 A 315 ILE PHE ASN GLY ASP PHE VAL ASP ARG GLY SER PHE SER SEQRES 9 A 315 VAL GLU VAL ILE LEU THR LEU PHE GLY PHE LYS LEU LEU SEQRES 10 A 315 TYR PRO ASP HIS PHE HIS LEU LEU ARG GLY ASN HIS GLU SEQRES 11 A 315 THR ASP ASN MET ASN GLN ILE TYR GLY PHE GLU GLY GLU SEQRES 12 A 315 VAL LYS ALA LYS TYR THR ALA GLN MET TYR GLU LEU PHE SEQRES 13 A 315 SER GLU VAL PHE GLU TRP LEU PRO LEU ALA GLN CYS ILE SEQRES 14 A 315 ASN GLY LYS VAL LEU ILE MET HIS GLY GLY LEU PHE SER SEQRES 15 A 315 GLU ASP GLY VAL THR LEU ASP ASP ILE ARG LYS ILE GLU SEQRES 16 A 315 ARG ASN ARG GLN PRO PRO ASP SER GLY PRO MET CYS ASP SEQRES 17 A 315 LEU LEU TRP SER ASP PRO GLN PRO GLN ASN GLY ARG SER SEQRES 18 A 315 ILE SER LYS ARG GLY VAL SER CYS GLN PHE GLY PRO ASP SEQRES 19 A 315 VAL THR LYS ALA PHE LEU GLU GLU ASN ASN LEU ASP TYR SEQRES 20 A 315 ILE ILE ARG SER HIS GLU VAL LYS ALA GLU GLY TYR GLU SEQRES 21 A 315 VAL ALA HIS GLY GLY ARG CYS VAL THR VAL PHE SER ALA SEQRES 22 A 315 PRO ASN TYR CYS ASP GLN MET GLY ASN LYS ALA SER TYR SEQRES 23 A 315 ILE HIS LEU GLN GLY SER ASP LEU ARG PRO GLN PHE HIS SEQRES 24 A 315 GLN PHE THR ALA VAL PRO HIS PRO ASN VAL LYS PRO MET SEQRES 25 A 315 ALA TYR ALA SEQRES 1 D 315 TYR SER GLY PRO LYS LEU GLU ASP GLY LYS VAL THR ILE SEQRES 2 D 315 SER PHE MET LYS GLU LEU MET GLN TRP TYR LYS ASP GLN SEQRES 3 D 315 LYS LYS LEU HIS ARG LYS CYS ALA TYR GLN ILE LEU VAL SEQRES 4 D 315 GLN VAL LYS GLU VAL LEU SER LYS LEU SER THR LEU VAL SEQRES 5 D 315 GLU THR THR LEU LYS GLU THR GLU LYS ILE THR VAL CYS SEQRES 6 D 315 GLY ASP THR HIS GLY GLN PHE TYR ASP LEU LEU ASN ILE SEQRES 7 D 315 PHE GLU LEU ASN GLY LEU PRO SER GLU THR ASN PRO TYR SEQRES 8 D 315 ILE PHE ASN GLY ASP PHE VAL ASP ARG GLY SER PHE SER SEQRES 9 D 315 VAL GLU VAL ILE LEU THR LEU PHE GLY PHE LYS LEU LEU SEQRES 10 D 315 TYR PRO ASP HIS PHE HIS LEU LEU ARG GLY ASN HIS GLU SEQRES 11 D 315 THR ASP ASN MET ASN GLN ILE TYR GLY PHE GLU GLY GLU SEQRES 12 D 315 VAL LYS ALA LYS TYR THR ALA GLN MET TYR GLU LEU PHE SEQRES 13 D 315 SER GLU VAL PHE GLU TRP LEU PRO LEU ALA GLN CYS ILE SEQRES 14 D 315 ASN GLY LYS VAL LEU ILE MET HIS GLY GLY LEU PHE SER SEQRES 15 D 315 GLU ASP GLY VAL THR LEU ASP ASP ILE ARG LYS ILE GLU SEQRES 16 D 315 ARG ASN ARG GLN PRO PRO ASP SER GLY PRO MET CYS ASP SEQRES 17 D 315 LEU LEU TRP SER ASP PRO GLN PRO GLN ASN GLY ARG SER SEQRES 18 D 315 ILE SER LYS ARG GLY VAL SER CYS GLN PHE GLY PRO ASP SEQRES 19 D 315 VAL THR LYS ALA PHE LEU GLU GLU ASN ASN LEU ASP TYR SEQRES 20 D 315 ILE ILE ARG SER HIS GLU VAL LYS ALA GLU GLY TYR GLU SEQRES 21 D 315 VAL ALA HIS GLY GLY ARG CYS VAL THR VAL PHE SER ALA SEQRES 22 D 315 PRO ASN TYR CYS ASP GLN MET GLY ASN LYS ALA SER TYR SEQRES 23 D 315 ILE HIS LEU GLN GLY SER ASP LEU ARG PRO GLN PHE HIS SEQRES 24 D 315 GLN PHE THR ALA VAL PRO HIS PRO ASN VAL LYS PRO MET SEQRES 25 D 315 ALA TYR ALA
HET MN A 500 1 HET MN A 501 1 HET ENL A 0 13 HET MN D 500 1 HET MN D 501 1 HET ENL D 0 13
HETNAM MN MANGANESE (II) ION HETNAM ENL (1R,2S,3R,4S)-7-OXABICYCLO[2.2.1]HEPTANE-2,3- HETNAM 2 ENL DICARBOXYLIC ACID
HETSYN ENL ENDOTHALL
FORMUL 3 MN 4(MN 2+) FORMUL 5 ENL 2(C8 H10 O5) FORMUL 9 HOH *790(H2 O)
HELIX 1 1 THR A 187 ASP A 200 1 14 HELIX 2 2 HIS A 205 LYS A 222 1 18 HELIX 3 3 GLN A 246 GLY A 258 1 13 HELIX 4 4 PHE A 278 TYR A 293 1 16 HELIX 5 5 THR A 306 GLY A 314 1 9 HELIX 6 6 GLY A 314 TYR A 323 1 10 HELIX 7 7 THR A 324 GLU A 336 1 13 HELIX 8 8 THR A 362 ILE A 369 1 8 HELIX 9 9 GLY A 379 SER A 387 1 9 HELIX 10 10 GLY A 407 ASN A 419 1 13 HELIX 11 11 HIS A 438 GLY A 440 5 3 HELIX 12 12 ASN A 450 GLN A 454 5 5 HELIX 13 13 THR D 187 ASP D 200 1 14 HELIX 14 14 HIS D 205 LYS D 222 1 18 HELIX 15 15 GLN D 246 GLY D 258 1 13 HELIX 16 16 PHE D 278 TYR D 293 1 16 HELIX 17 17 THR D 306 GLY D 314 1 9 HELIX 18 18 GLY D 314 TYR D 323 1 10 HELIX 19 19 THR D 324 GLU D 336 1 13 HELIX 20 20 THR D 362 LYS D 368 1 7 HELIX 21 21 GLY D 379 SER D 387 1 9 HELIX 22 22 GLY D 407 ASN D 418 1 12 HELIX 23 23 HIS D 438 GLY D 440 5 3 HELIX 24 24 ASN D 450 GLN D 454 5 5
SHEET 1 A 6 LEU A 226 THR A 229 0 SHEET 2 A 6 ALA A 341 ILE A 344 1 O CYS A 343 N VAL A 227 SHEET 3 A 6 VAL A 348 MET A 351 -1 O ILE A 350 N GLN A 342 SHEET 4 A 6 TYR A 422 ARG A 425 1 O ILE A 424 N LEU A 349 SHEET 5 A 6 CYS A 442 VAL A 445 1 O VAL A 443 N ARG A 425 SHEET 6 A 6 TYR A 434 ALA A 437 -1 N ALA A 437 O CYS A 442 SHEET 1 B 5 PHE A 297 LEU A 300 0 SHEET 2 B 5 TYR A 266 ASN A 269 1 N TYR A 266 O HIS A 298 SHEET 3 B 5 LYS A 236 CYS A 240 1 N CYS A 240 O ILE A 267 SHEET 4 B 5 ALA A 459 GLN A 465 -1 O ILE A 462 N VAL A 239 SHEET 5 B 5 ASP A 468 PHE A 476 -1 O PHE A 476 N ALA A 459 SHEET 1 C 3 ASP A 388 PRO A 389 0 SHEET 2 C 3 CYS A 404 PHE A 406 1 O PHE A 406 N ASP A 388 SHEET 3 C 3 ARG A 395 ILE A 397 -1 N SER A 396 O GLN A 405 SHEET 1 D 6 LEU D 226 THR D 229 0 SHEET 2 D 6 ALA D 341 ILE D 344 1 O CYS D 343 N VAL D 227 SHEET 3 D 6 VAL D 348 MET D 351 -1 O ILE D 350 N GLN D 342 SHEET 4 D 6 TYR D 422 ARG D 425 1 O ILE D 424 N LEU D 349 SHEET 5 D 6 CYS D 442 VAL D 445 1 O VAL D 443 N ARG D 425 SHEET 6 D 6 TYR D 434 ALA D 437 -1 N ALA D 437 O CYS D 442 SHEET 1 E 5 PHE D 297 LEU D 300 0 SHEET 2 E 5 TYR D 266 ASN D 269 1 N PHE D 268 O HIS D 298 SHEET 3 E 5 LYS D 236 CYS D 240 1 N CYS D 240 O ILE D 267 SHEET 4 E 5 ALA D 459 GLN D 465 -1 O ILE D 462 N VAL D 239 SHEET 5 E 5 ASP D 468 PHE D 476 -1 O PHE D 476 N ALA D 459 SHEET 1 F 3 ASP D 388 PRO D 389 0 SHEET 2 F 3 CYS D 404 PHE D 406 1 O PHE D 406 N ASP D 388 SHEET 3 F 3 ARG D 395 ILE D 397 -1 N SER D 396 O GLN D 405
LINK OD2 ASP A 242 MN MN A 501 1555 1555 2.10 LINK OD2 ASP A 271 MN MN A 500 1555 1555 2.30 LINK OD2 ASP A 271 MN MN A 501 1555 1555 2.14 LINK OD1 ASN A 303 MN MN A 500 1555 1555 2.05 LINK OD2 ASP D 242 MN MN D 501 1555 1555 2.10 LINK OD2 ASP D 271 MN MN D 501 1555 1555 2.18 LINK OD2 ASP D 271 MN MN D 500 1555 1555 2.30 LINK OD1 ASN D 303 MN MN D 500 1555 1555 2.08 LINK MN MN A 500 O2 ENL A 0 1555 1555 2.03 LINK MN MN A 501 O2 ENL A 0 1555 1555 2.23 LINK MN MN A 501 O4 ENL A 0 1555 1555 2.21 LINK MN MN A 501 O1 ENL A 0 1555 1555 2.30 LINK MN MN D 500 O2 ENL D 0 1555 1555 2.03 LINK MN MN D 501 O4 ENL D 0 1555 1555 2.16 LINK MN MN D 501 O1 ENL D 0 1555 1555 2.25 LINK MN MN D 501 O2 ENL D 0 1555 1555 2.21
SITE 1 AC1 6 ENL A 0 ASP A 271 ASN A 303 HIS A 352 SITE 2 AC1 6 HIS A 427 MN A 501 SITE 1 AC2 5 ENL A 0 ASP A 242 HIS A 244 ASP A 271 SITE 2 AC2 5 MN A 500 SITE 1 AC3 16 ASP A 242 HIS A 244 ASP A 271 ARG A 275 SITE 2 AC3 16 ASN A 303 HIS A 304 HIS A 352 ARG A 400 SITE 3 AC3 16 HIS A 427 VAL A 429 PHE A 446 TYR A 451 SITE 4 AC3 16 MN A 500 MN A 501 HOH A 600 HOH A 614 SITE 1 AC4 6 ENL D 0 ASP D 271 ASN D 303 HIS D 352 SITE 2 AC4 6 HIS D 427 MN D 501 SITE 1 AC5 5 ENL D 0 ASP D 242 HIS D 244 ASP D 271 SITE 2 AC5 5 MN D 500 SITE 1 AC6 15 ASP D 242 HIS D 244 ASP D 271 ARG D 275 SITE 2 AC6 15 ASN D 303 HIS D 304 HIS D 352 ARG D 400 SITE 3 AC6 15 HIS D 427 VAL D 429 PHE D 446 TYR D 451 SITE 4 AC6 15 MN D 500 MN D 501 HOH D 530
CRYST1 154.499 41.781 105.905 90.00 96.96 90.00 C 1 2 1 8
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 0.006473 0.000000 0.000791 0.00000
SCALE2 0.000000 0.023934 0.000000 0.00000
SCALE3 0.000000 0.000000 0.009513 0.00000