10 20 30 40 50 60 70 80 3H4T - Header ----|----|----|----|----|----|----|----|----|----|----|----|----|----|----|----| Asymmetric UnitHEADER TRANSFERASE 20-APR-09 3H4T
TITLE CHIMERIC GLYCOSYLTRANSFERASE FOR THE GENERATION OF NOVEL TITLE 2 NATURAL PRODUCTS - GTFAH1 IN COMPLEX WITH UDP-2F-GLC
COMPND MOL_ID: 1; COMPND 2 MOLECULE: GLYCOSYLTRANSFERASE GTFA, GLYCOSYLTRANSFERASE; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 1-214, UNP RESIDUES 218-393; COMPND 5 SYNONYM: GTFA, ORF1, PCZA361.19, GTFA PROTEIN; COMPND 6 EC: 2.4.-.-; COMPND 7 ENGINEERED: YES
SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: AMYCOLATOPSIS ORIENTALIS, ACTINOPLANES SOURCE 3 TEICHOMYCETICUS; SOURCE 4 ORGANISM_TAXID: 31958, 1867; SOURCE 5 GENE: GTFA; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET 28A(+)
KEYWDS GLYCOSYLTRANSFERASE, VANCOMYCIN, TEICOPLANIN, GTFA, ORF1, KEYWDS 2 NATURAL PRODUCTS, ANTIBIOTIC
EXPDTA X-RAY DIFFRACTION
AUTHOR M.V.B.DIAS,A.W.TRUMAN,S.WU,T.L.BLUNDELL,F.HUANG,J.B.SPENCER
REVDAT 1 28-JUL-09 3H4T 0
JRNL AUTH A.W.TRUMAN,M.V.B.DIAS,S.WU,T.L.BLUNDELL,F.HUANG, JRNL AUTH 2 J.B.SPENCER JRNL TITL CHIMERIC GLYCOSYLTRANSFERASES FOR THE GENERATION OF JRNL TITL 2 HYBRID GLYCOPEPTIDES JRNL REF CHEM.BIOL. V. 16 676 2009 JRNL REFN ISSN 1074-5521 JRNL PMID 19549605 JRNL DOI 10.1016/J.CHEMBIOL.2009.04.013
REMARK 1
REMARK 2 REMARK 2 RESOLUTION. 1.15 ANGSTROMS.
REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.15 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 42.80 REMARK 3 DATA CUTOFF (SIGMA(F)) : 2.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.1 REMARK 3 NUMBER OF REFLECTIONS : 160958 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.170 REMARK 3 R VALUE (WORKING SET) : 0.170 REMARK 3 FREE R VALUE : 0.182 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 8480 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.15 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.18 REMARK 3 REFLECTION IN BIN (WORKING SET) : 10777 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 90.11 REMARK 3 BIN R VALUE (WORKING SET) : 0.2570 REMARK 3 BIN FREE R VALUE SET COUNT : 553 REMARK 3 BIN FREE R VALUE : 0.2880 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2861 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 45 REMARK 3 SOLVENT ATOMS : 589 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 13.10 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.01000 REMARK 3 B22 (A**2) : 0.00000 REMARK 3 B33 (A**2) : 0.01000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.033 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.031 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.019 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 0.905 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.968 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.963 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2962 ; 0.006 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4063 ; 1.460 ; 1.993 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 388 ; 6.916 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 113 ;34.215 ;22.566 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 421 ;10.256 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 29 ;16.647 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 474 ; 0.075 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2259 ; 0.004 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1613 ; 0.194 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 2081 ; 0.305 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 456 ; 0.092 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 68 ; 0.156 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 56 ; 0.109 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1979 ; 0.648 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3120 ; 1.032 ; 2.000 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1084 ; 1.528 ; 3.000 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 943 ; 2.184 ; 4.500 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): 3063 ; 0.885 ; 3.000 REMARK 3 SPHERICITY; FREE ATOMS (A**2): 589 ; 1.871 ; 3.000 REMARK 3 SPHERICITY; BONDED ATOMS (A**2): 2906 ; 1.815 ; 3.000 REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE REMARK 3 RIDING POSITIONS
REMARK 4 REMARK 4 3H4T COMPLIES WITH FORMAT V. 3.20, 01-DEC-08
REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 22-APR-09. REMARK 100 THE RCSB ID CODE IS RCSB052692.
REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 06-DEC-07 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : BM14 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.977 REMARK 200 MONOCHROMATOR : GRAPHITE REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MAR CCD 130 MM REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 169485 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.150 REMARK 200 RESOLUTION RANGE LOW (A) : 42.800 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.2 REMARK 200 DATA REDUNDANCY : 6.800 REMARK 200 R MERGE (I) : 0.07700 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.15 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.21 REMARK 200 COMPLETENESS FOR SHELL (%) : 94.7 REMARK 200 DATA REDUNDANCY IN SHELL : 5.60 REMARK 200 R MERGE FOR SHELL (I) : 0.64700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: PDB ENTRY 1PN3 REMARK 200 REMARK 200 REMARK: NULL
REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 57.14 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.87 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: TRIS HCL PH 8.5, 1.2-2M AMMONIUM REMARK 280 SULPHATE, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 300K
REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 33.54350 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 33.54350 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 55.55350 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 64.84650 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 55.55350 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 64.84650 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 33.54350 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 55.55350 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 64.84650 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 33.54350 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 55.55350 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 64.84650 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL
REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA.
REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000
REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 416 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 819 LIES ON A SPECIAL POSITION.
REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 GLN A 384 REMARK 465 ARG A 385 REMARK 465 SER A 386 REMARK 465 SER A 387 REMARK 465 VAL A 388 REMARK 465 PRO A 389 REMARK 465 ALA A 390 REMARK 465 HIS A 541 REMARK 465 HIS A 542 REMARK 465 HIS A 543 REMARK 465 HIS A 544 REMARK 465 HIS A 545 REMARK 465 HIS A 546
REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS(M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 534 CG CD CE NZ REMARK 470 GLU A 540 CG CD OE1 OE2
REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PHE A 149 11.15 -140.84 REMARK 500 THR A 174 172.11 66.67 REMARK 500 GLN A 176 65.58 -155.84 REMARK 500 ALA A 314 -155.91 70.93 REMARK 500 ASP A 315 -58.82 74.78 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 GLY A 292 GLY A 293 79.15 REMARK 500 ALA A 314 ASP A 315 41.94 REMARK 500 REMARK 500 REMARK: NULL
REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 389 DISTANCE = 5.76 ANGSTROMS REMARK 525 HOH A 549 DISTANCE = 6.93 ANGSTROMS REMARK 525 HOH A 562 DISTANCE = 6.35 ANGSTROMS REMARK 525 HOH A 925 DISTANCE = 6.57 ANGSTROMS REMARK 525 HOH A 983 DISTANCE = 5.78 ANGSTROMS
REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 A 600 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 A 601 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 A 602 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 A 603 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE UDP A 604
REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3H4I RELATED DB: PDB REMARK 900 THE SAME PROTEIN COMPLEXED WITH U2F
REMARK 999 REMARK 999 SEQUENCE REMARK 999 THERE ARE CONFLICTS BETWEEN THE REPORTED SEQUENCE AND DATABASE REMARK 999 REFERENCE ONE(P96558 IN UNIPROT). ACCORDING TO THE DEPOSITORS, REMARK 999 THE DIFFERENCE IN THE RESIDUES IS POSSIBLY DUE TO DIFFERENT REMARK 999 ANNOTATION IN THE DATA BASE OR DUE TO THE CONSTRUCTION OF THE REMARK 999 CHIMERIC PROTEIN. THIS COORDINATES USE NON-SEQUENTIAL RESIDUE REMARK 999 NUMBERING FOR CLARIFICATION OF THE EXPRESSION TAGS AT THE C- REMARK 999 TERMINUS.
DBREF 3H4T A 1 214 UNP P96558 P96558_AMYOR 1 214 DBREF 3H4T A 215 390 UNP Q6ZZJ7 Q6ZZJ7_ACTTI 218 393
SEQADV 3H4T GLY A 2 UNP P96558 ARG 2 SEE REMARK 999 SEQADV 3H4T GLN A 206 UNP P96558 GLU 206 SEE REMARK 999 SEQADV 3H4T ALA A 533 UNP Q6ZZJ7 EXPRESSION TAG SEQADV 3H4T LYS A 534 UNP Q6ZZJ7 EXPRESSION TAG SEQADV 3H4T LEU A 535 UNP Q6ZZJ7 EXPRESSION TAG SEQADV 3H4T ALA A 536 UNP Q6ZZJ7 EXPRESSION TAG SEQADV 3H4T ALA A 537 UNP Q6ZZJ7 EXPRESSION TAG SEQADV 3H4T ALA A 538 UNP Q6ZZJ7 EXPRESSION TAG SEQADV 3H4T LEU A 539 UNP Q6ZZJ7 EXPRESSION TAG SEQADV 3H4T GLU A 540 UNP Q6ZZJ7 EXPRESSION TAG SEQADV 3H4T HIS A 541 UNP Q6ZZJ7 EXPRESSION TAG SEQADV 3H4T HIS A 542 UNP Q6ZZJ7 EXPRESSION TAG SEQADV 3H4T HIS A 543 UNP Q6ZZJ7 EXPRESSION TAG SEQADV 3H4T HIS A 544 UNP Q6ZZJ7 EXPRESSION TAG SEQADV 3H4T HIS A 545 UNP Q6ZZJ7 EXPRESSION TAG SEQADV 3H4T HIS A 546 UNP Q6ZZJ7 EXPRESSION TAG
SEQRES 1 A 404 MET GLY VAL LEU ILE THR GLY CYS GLY SER ARG GLY ASP SEQRES 2 A 404 THR GLU PRO LEU VAL ALA LEU ALA ALA ARG LEU ARG GLU SEQRES 3 A 404 LEU GLY ALA ASP ALA ARG MET CYS LEU PRO PRO ASP TYR SEQRES 4 A 404 VAL GLU ARG CYS ALA GLU VAL GLY VAL PRO MET VAL PRO SEQRES 5 A 404 VAL GLY ARG ALA VAL ARG ALA GLY ALA ARG GLU PRO GLY SEQRES 6 A 404 GLU LEU PRO PRO GLY ALA ALA GLU VAL VAL THR GLU VAL SEQRES 7 A 404 VAL ALA GLU TRP PHE ASP LYS VAL PRO ALA ALA ILE GLU SEQRES 8 A 404 GLY CYS ASP ALA VAL VAL THR THR GLY LEU LEU PRO ALA SEQRES 9 A 404 ALA VAL ALA VAL ARG SER MET ALA GLU LYS LEU GLY ILE SEQRES 10 A 404 PRO TYR ARG TYR THR VAL LEU SER PRO ASP HIS LEU PRO SEQRES 11 A 404 SER GLU GLN SER GLN ALA GLU ARG ASP MET TYR ASN GLN SEQRES 12 A 404 GLY ALA ASP ARG LEU PHE GLY ASP ALA VAL ASN SER HIS SEQRES 13 A 404 ARG ALA SER ILE GLY LEU PRO PRO VAL GLU HIS LEU TYR SEQRES 14 A 404 ASP TYR GLY TYR THR ASP GLN PRO TRP LEU ALA ALA ASP SEQRES 15 A 404 PRO VAL LEU SER PRO LEU ARG PRO THR ASP LEU GLY THR SEQRES 16 A 404 VAL GLN THR GLY ALA TRP ILE LEU PRO ASP GLN ARG PRO SEQRES 17 A 404 LEU SER ALA GLU LEU GLU GLY PHE LEU ARG ALA GLY SER SEQRES 18 A 404 PRO PRO VAL TYR VAL GLY PHE GLY SER GLY PRO ALA PRO SEQRES 19 A 404 ALA GLU ALA ALA ARG VAL ALA ILE GLU ALA VAL ARG ALA SEQRES 20 A 404 GLN GLY ARG ARG VAL VAL LEU SER SER GLY TRP ALA GLY SEQRES 21 A 404 LEU GLY ARG ILE ASP GLU GLY ASP ASP CYS LEU VAL VAL SEQRES 22 A 404 GLY GLU VAL ASN HIS GLN VAL LEU PHE GLY ARG VAL ALA SEQRES 23 A 404 ALA VAL VAL HIS HIS GLY GLY ALA GLY THR THR THR ALA SEQRES 24 A 404 VAL THR ARG ALA GLY ALA PRO GLN VAL VAL VAL PRO GLN SEQRES 25 A 404 LYS ALA ASP GLN PRO TYR TYR ALA GLY ARG VAL ALA ASP SEQRES 26 A 404 LEU GLY VAL GLY VAL ALA HIS ASP GLY PRO THR PRO THR SEQRES 27 A 404 VAL GLU SER LEU SER ALA ALA LEU ALA THR ALA LEU THR SEQRES 28 A 404 PRO GLY ILE ARG ALA ARG ALA ALA ALA VAL ALA GLY THR SEQRES 29 A 404 ILE ARG THR ASP GLY THR THR VAL ALA ALA LYS LEU LEU SEQRES 30 A 404 LEU GLU ALA ILE SER ARG GLN ARG SER SER VAL PRO ALA SEQRES 31 A 404 ALA LYS LEU ALA ALA ALA LEU GLU HIS HIS HIS HIS HIS SEQRES 32 A 404 HIS
HET PO4 A 600 5 HET PO4 A 601 5 HET PO4 A 602 5 HET PO4 A 603 5 HET UDP A 604 25
HETNAM PO4 PHOSPHATE ION HETNAM UDP URIDINE-5'-DIPHOSPHATE
FORMUL 2 PO4 4(O4 P 3-) FORMUL 6 UDP C9 H14 N2 O12 P2 FORMUL 7 HOH *589(H2 O)
HELIX 1 1 SER A 10 LEU A 27 1 18 HELIX 2 2 PRO A 36 ASP A 38 5 3 HELIX 3 3 TYR A 39 VAL A 46 1 8 HELIX 4 4 ARG A 58 ARG A 62 5 5 HELIX 5 5 ALA A 71 GLU A 73 5 3 HELIX 6 6 VAL A 74 GLU A 91 1 18 HELIX 7 7 LEU A 101 GLY A 116 1 16 HELIX 8 8 SER A 125 GLN A 133 5 9 HELIX 9 9 SER A 134 ILE A 160 1 27 HELIX 10 10 HIS A 167 THR A 174 1 8 HELIX 11 11 SER A 210 ALA A 219 1 10 HELIX 12 12 GLU A 236 GLN A 248 1 13 HELIX 13 13 ASN A 277 PHE A 282 1 6 HELIX 14 14 GLY A 283 VAL A 285 5 3 HELIX 15 15 GLY A 293 GLY A 304 1 12 HELIX 16 16 ASP A 315 GLY A 327 1 13 HELIX 17 17 THR A 338 LEU A 350 1 13 HELIX 18 18 THR A 351 GLY A 363 1 13 HELIX 19 19 ASP A 368 ARG A 383 1 16 HELIX 20 20 ALA A 533 GLU A 540 1 8
SHEET 1 A 6 MET A 50 PRO A 52 0 SHEET 2 A 6 ALA A 31 LEU A 35 1 N MET A 33 O VAL A 51 SHEET 3 A 6 VAL A 3 CYS A 8 1 N VAL A 3 O ARG A 32 SHEET 4 A 6 ALA A 95 GLY A 100 1 O VAL A 97 N THR A 6 SHEET 5 A 6 TYR A 119 VAL A 123 1 O ARG A 120 N THR A 98 SHEET 6 A 6 TRP A 178 LEU A 179 1 O TRP A 178 N VAL A 123 SHEET 1 B 6 CYS A 270 VAL A 273 0 SHEET 2 B 6 VAL A 252 SER A 255 1 N LEU A 254 O LEU A 271 SHEET 3 B 6 VAL A 224 VAL A 226 1 N VAL A 226 O SER A 255 SHEET 4 B 6 ALA A 287 HIS A 290 1 O VAL A 289 N TYR A 225 SHEET 5 B 6 GLN A 307 VAL A 309 1 O VAL A 308 N VAL A 288 SHEET 6 B 6 GLY A 329 ALA A 331 1 O VAL A 330 N VAL A 309
SITE 1 AC1 5 VAL A 57 ALA A 59 ARG A 62 HOH A 636 SITE 2 AC1 5 HOH A 771 SITE 1 AC2 6 ARG A 109 THR A 174 ASP A 175 HOH A 511 SITE 2 AC2 6 HOH A 901 HOH A 955 SITE 1 AC3 3 ARG A 120 HOH A 388 HOH A 745 SITE 1 AC4 3 ARG A 55 GLU A 66 LEU A 67 SITE 1 AC5 23 SER A 10 ARG A 11 GLY A 12 GLY A 229 SITE 2 AC5 23 SER A 230 GLU A 275 VAL A 276 HIS A 278 SITE 3 AC5 23 HIS A 291 GLY A 293 ALA A 294 GLY A 295 SITE 4 AC5 23 THR A 296 HOH A 568 HOH A 589 HOH A 596 SITE 5 AC5 23 HOH A 597 HOH A 609 HOH A 634 HOH A 654 SITE 6 AC5 23 HOH A 701 HOH A 760 HOH A 961
CRYST1 111.107 129.693 67.087 90.00 90.00 90.00 C 2 2 21 8
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 0.009000 0.000000 0.000000 0.00000
SCALE2 0.000000 0.007711 0.000000 0.00000
SCALE3 0.000000 0.000000 0.014906 0.00000