10 20 30 40 50 60 70 80 3GVV - Header ----|----|----|----|----|----|----|----|----|----|----|----|----|----|----|----| Asymmetric UnitHEADER LYASE 31-MAR-09 3GVV
TITLE SINGLE-CHAIN UROD Y164G (GY) MUTATION
COMPND MOL_ID: 1; COMPND 2 MOLECULE: UROPORPHYRINOGEN DECARBOXYLASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: URO-D, UPD; COMPND 5 EC: 4.1.1.37; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES
SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: UROD; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21
KEYWDS UROPORPHYRINOGEN, DECARBOXYLASE, LYASE, HEME BIOSYNTHESIS, KEYWDS 2 ACETYLATION, CYTOPLASM, DISEASE MUTATION, PHOSPHOPROTEIN, KEYWDS 3 PORPHYRIN BIOSYNTHESIS
EXPDTA X-RAY DIFFRACTION
AUTHOR C.P.HILL,J.D.PHILLIPS,F.G.WHITBY,C.WARBY,J.P.KUSHNER
REVDAT 1 07-JUL-09 3GVV 0
JRNL AUTH J.D.PHILLIPS,C.A.WARBY,F.G.WHITBY,J.P.KUSHNER, JRNL AUTH 2 C.P.HILL JRNL TITL SUBSTRATE SHUTTLING BETWEEN ACTIVE SITES OF JRNL TITL 2 UROPORPHYRINOGEN DECARBOXYLASE IS NOT REQUIRED TO JRNL TITL 3 GENERATE COPROPORPHYRINOGEN. JRNL REF J.MOL.BIOL. V. 389 306 2009 JRNL REFN ISSN 0022-2836 JRNL PMID 19362562 JRNL DOI 10.1016/J.JMB.2009.04.013
REMARK 1
REMARK 2 REMARK 2 RESOLUTION. 2.80 ANGSTROMS.
REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0062 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 33.69 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.9 REMARK 3 NUMBER OF REFLECTIONS : 10954 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.181 REMARK 3 R VALUE (WORKING SET) : 0.172 REMARK 3 FREE R VALUE : 0.262 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 9.700 REMARK 3 FREE R VALUE TEST SET COUNT : 1067 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.80 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.87 REMARK 3 REFLECTION IN BIN (WORKING SET) : 607 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 82.61 REMARK 3 BIN R VALUE (WORKING SET) : 0.2410 REMARK 3 BIN FREE R VALUE SET COUNT : 58 REMARK 3 BIN FREE R VALUE : 0.3900 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2811 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 25 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 50.38 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -2.74000 REMARK 3 B22 (A**2) : -2.74000 REMARK 3 B33 (A**2) : 4.11000 REMARK 3 B12 (A**2) : -1.37000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.410 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.282 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 14.486 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.954 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.879 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2884 ; 0.017 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3921 ; 1.672 ; 1.970 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 357 ; 6.273 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 134 ;37.573 ;23.209 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 468 ;20.519 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 24 ;15.337 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 425 ; 0.109 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2239 ; 0.006 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1784 ; 0.802 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2867 ; 1.600 ; 2.000 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1100 ; 2.258 ; 3.000 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1054 ; 4.028 ; 4.500 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: REMARK 3 HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS REMARK 3 U VALUES: REFINED INDIVIDUALLY REMARK 3 THE PROTEIN IS A SINGLE-CHAIN FUSION DIMER OF HUMAN REMARK 3 UROD WITH F217 MUTATED TO A Y IN THE FIRST OF THE REMARK 3 TWO HALVES. BECAUSE THE CRYSTAL IS ISOMORPHOUS WITH REMARK 3 WTUROD IN WHICH THERE IS A MONOMER IN THE ASYMMETRIC REMARK 3 UNIT, WE HAVE MODELED Y217 IN TWO CONFORMATIONS REMARK 3 AT ONE-HALF OCCUPANCY EACH. THIS ACCOUNTS FOR THE REMARK 3 STOCHASTIC ARRANGEMENT OF THE FUSION DIMER IN THE REMARK 3 CRYSTAL SUCH THAT RESIDUE 217 IS EFFECTIVELY HALF F REMARK 3 AND HALF Y.
REMARK 4 REMARK 4 3GVV COMPLIES WITH FORMAT V. 3.20, 01-DEC-08
REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 03-APR-09. REMARK 100 THE RCSB ID CODE IS RCSB052371.
REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 18-AUG-08 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU RU200 REMARK 200 MONOCHROMATIC OR LAUE (M/L) : NULL REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : YALE MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU RAXIS IV REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL REMARK 200 DATA SCALING SOFTWARE : HKL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 10977 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.800 REMARK 200 RESOLUTION RANGE LOW (A) : 40.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.1 REMARK 200 DATA REDUNDANCY : 12.000 REMARK 200 R MERGE (I) : 0.18300 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 13.7420 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.90 REMARK 200 COMPLETENESS FOR SHELL (%) : 85.9 REMARK 200 DATA REDUNDANCY IN SHELL : 4.60 REMARK 200 R MERGE FOR SHELL (I) : 0.45500 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL
REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 54.46 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.70 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: HANGING DROP
REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 31 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+2/3 REMARK 290 6555 -X,-X+Y,-Z+1/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 24.04933 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 48.09867 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 48.09867 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 24.04933 REMARK 290 REMARK 290 REMARK: NULL
REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA.
REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2380 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 26270 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -10.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 178.28172 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 120.24667 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000
REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 GLU A 2 REMARK 465 ALA A 3 REMARK 465 ASN A 4 REMARK 465 GLY A 5 REMARK 465 LEU A 6 REMARK 465 GLY A 7 REMARK 465 PRO A 8 REMARK 465 GLN A 9 REMARK 465 GLY A 10 REMARK 465 ASN A 367
REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 TYR A 217 OH
REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 15 -81.52 -84.91 REMARK 500 SER A 57 38.41 -99.94 REMARK 500 THR A 58 19.12 -157.95 REMARK 500 CYS A 59 -94.98 85.66 REMARK 500 PRO A 77 59.96 -63.59 REMARK 500 PRO A 102 57.12 -7.14 REMARK 500 SER A 107 119.12 -171.31 REMARK 500 ASP A 117 -33.73 -39.20 REMARK 500 GLU A 218 72.55 -111.30 REMARK 500 ASN A 304 37.65 -149.51 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CHIRAL CENTERS REMARK 500 REMARK 500 UNEXPECTED CONFIGURATION OF THE FOLLOWING CHIRAL REMARK 500 CENTER(S) USING IMPROPER CA--C--CB--N CHIRALITY REMARK 500 M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (11X,I3,1X,A3,1X,A1,I4,A1,6X,F5.1,6X,A1,10X,A1,3X,A16) REMARK 500 REMARK 500 M RES CSSEQI IMPROPER EXPECTED FOUND DETAILS REMARK 500 CYS A 59 22.7 L L OUTSIDE RANGE REMARK 500 REMARK 500 REMARK: NULL
REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1URO RELATED DB: PDB REMARK 900 WT UROD REMARK 900 RELATED ID: 3GVQ RELATED DB: PDB REMARK 900 WT SCUROD REMARK 900 RELATED ID: 3GVR RELATED DB: PDB REMARK 900 SCUROD WITH Y164G MUTATION IN ONE HALF REMARK 900 RELATED ID: 3GVW RELATED DB: PDB REMARK 900 SCUROD
DBREF 3GVV A 1 367 UNP P06132 DCUP_HUMAN 1 367
SEQADV 3GVV TYR A 217 UNP P06132 PHE 217 ENGINEERED
SEQRES 1 A 367 MET GLU ALA ASN GLY LEU GLY PRO GLN GLY PHE PRO GLU SEQRES 2 A 367 LEU LYS ASN ASP THR PHE LEU ARG ALA ALA TRP GLY GLU SEQRES 3 A 367 GLU THR ASP TYR THR PRO VAL TRP CYS MET ARG GLN ALA SEQRES 4 A 367 GLY ARG TYR LEU PRO GLU PHE ARG GLU THR ARG ALA ALA SEQRES 5 A 367 GLN ASP PHE PHE SER THR CYS ARG SER PRO GLU ALA CYS SEQRES 6 A 367 CYS GLU LEU THR LEU GLN PRO LEU ARG ARG PHE PRO LEU SEQRES 7 A 367 ASP ALA ALA ILE ILE PHE SER ASP ILE LEU VAL VAL PRO SEQRES 8 A 367 GLN ALA LEU GLY MET GLU VAL THR MET VAL PRO GLY LYS SEQRES 9 A 367 GLY PRO SER PHE PRO GLU PRO LEU ARG GLU GLU GLN ASP SEQRES 10 A 367 LEU GLU ARG LEU ARG ASP PRO GLU VAL VAL ALA SER GLU SEQRES 11 A 367 LEU GLY TYR VAL PHE GLN ALA ILE THR LEU THR ARG GLN SEQRES 12 A 367 ARG LEU ALA GLY ARG VAL PRO LEU ILE GLY PHE ALA GLY SEQRES 13 A 367 ALA PRO TRP THR LEU MET THR TYR MET VAL GLU GLY GLY SEQRES 14 A 367 GLY SER SER THR MET ALA GLN ALA LYS ARG TRP LEU TYR SEQRES 15 A 367 GLN ARG PRO GLN ALA SER HIS GLN LEU LEU ARG ILE LEU SEQRES 16 A 367 THR ASP ALA LEU VAL PRO TYR LEU VAL GLY GLN VAL VAL SEQRES 17 A 367 ALA GLY ALA GLN ALA LEU GLN LEU TYR GLU SER HIS ALA SEQRES 18 A 367 GLY HIS LEU GLY PRO GLN LEU PHE ASN LYS PHE ALA LEU SEQRES 19 A 367 PRO TYR ILE ARG ASP VAL ALA LYS GLN VAL LYS ALA ARG SEQRES 20 A 367 LEU ARG GLU ALA GLY LEU ALA PRO VAL PRO MET ILE ILE SEQRES 21 A 367 PHE ALA LYS ASP GLY HIS PHE ALA LEU GLU GLU LEU ALA SEQRES 22 A 367 GLN ALA GLY TYR GLU VAL VAL GLY LEU ASP TRP THR VAL SEQRES 23 A 367 ALA PRO LYS LYS ALA ARG GLU CYS VAL GLY LYS THR VAL SEQRES 24 A 367 THR LEU GLN GLY ASN LEU ASP PRO CYS ALA LEU TYR ALA SEQRES 25 A 367 SER GLU GLU GLU ILE GLY GLN LEU VAL LYS GLN MET LEU SEQRES 26 A 367 ASP ASP PHE GLY PRO HIS ARG TYR ILE ALA ASN LEU GLY SEQRES 27 A 367 HIS GLY LEU TYR PRO ASP MET ASP PRO GLU HIS VAL GLY SEQRES 28 A 367 ALA PHE VAL ASP ALA VAL HIS LYS HIS SER ARG LEU LEU SEQRES 29 A 367 ARG GLN ASN
FORMUL 2 HOH *25(H2 O)
HELIX 1 1 ASP A 17 GLY A 25 1 9 HELIX 2 2 LEU A 43 ALA A 51 1 9 HELIX 3 3 ASP A 54 THR A 58 5 5 HELIX 4 4 SER A 61 PHE A 76 1 16 HELIX 5 5 LEU A 88 LEU A 94 1 7 HELIX 6 6 GLU A 114 LEU A 121 5 8 HELIX 7 7 ASP A 123 GLU A 125 5 3 HELIX 8 8 VAL A 126 LEU A 131 1 6 HELIX 9 9 LEU A 131 ALA A 146 1 16 HELIX 10 10 ALA A 157 GLY A 168 1 12 HELIX 11 11 MET A 174 ARG A 184 1 11 HELIX 12 12 ARG A 184 ALA A 209 1 26 HELIX 13 13 GLY A 225 ALA A 233 1 9 HELIX 14 14 ALA A 233 ALA A 251 1 19 HELIX 15 15 GLY A 265 PHE A 267 5 3 HELIX 16 16 ALA A 268 ALA A 273 1 6 HELIX 17 17 ALA A 287 GLY A 296 1 10 HELIX 18 18 ASP A 306 ALA A 312 5 7 HELIX 19 19 SER A 313 GLY A 329 1 17 HELIX 20 20 ASP A 346 GLN A 366 1 21
SHEET 1 A 7 ALA A 81 ILE A 82 0 SHEET 2 A 7 LEU A 151 GLY A 156 1 O ILE A 152 N ALA A 81 SHEET 3 A 7 ALA A 213 GLU A 218 1 O ALA A 213 N GLY A 153 SHEET 4 A 7 MET A 258 ALA A 262 1 O PHE A 261 N GLU A 218 SHEET 5 A 7 VAL A 279 GLY A 281 1 O GLY A 281 N ILE A 260 SHEET 6 A 7 THR A 300 LEU A 305 1 O THR A 300 N VAL A 280 SHEET 7 A 7 TYR A 333 LEU A 337 1 O ILE A 334 N LEU A 301
CISPEP 1 THR A 58 CYS A 59 0 -20.45 CISPEP 2 GLY A 303 ASN A 304 0 -4.38
CRYST1 102.931 102.931 72.148 90.00 90.00 120.00 P 31 2 1 6
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 0.009715 0.005609 0.000000 0.00000
SCALE2 0.000000 0.011218 0.000000 0.00000
SCALE3 0.000000 0.000000 0.013860 0.00000