10 20 30 40 50 60 70 80 3GN8 - Header ----|----|----|----|----|----|----|----|----|----|----|----|----|----|----|----| Asymmetric UnitHEADER HORMONE/HORMONE ACTIVATOR 16-MAR-09 3GN8
TITLE X-RAY CRYSTAL STRUCTURE OF ANCGR2 IN COMPLEX WITH TITLE 2 DEXAMETHASONE
COMPND MOL_ID: 1; COMPND 2 MOLECULE: GLUCOCORTICOID RECEPTOR 2; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: NUCLEAR RECEPTOR COACTIVATOR 2; COMPND 7 CHAIN: C, E; COMPND 8 FRAGMENT: SEQUENCE DATABASE RESIDUES 734-754; COMPND 9 SYNONYM: NCOA-2, TRANSCRIPTIONAL INTERMEDIARY FACTOR 2, COMPND 10 HTIF2; COMPND 11 ENGINEERED: YES
SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PMALCH10T; SOURCE 10 MOL_ID: 2; SOURCE 11 SYNTHETIC: YES; SOURCE 12 OTHER_DETAILS: THE PEPTIDE WAS CHEMICALLY SYNTHESIZED. THE SOURCE 13 PEPTIDE IS NATURALLY FOUND IN HOMO SAPIENS (HUMAN).
KEYWDS NUCLEAR RECEPTOR, GR2, EVOLUTION, GLUCOCORTICOID RECEPTOR, KEYWDS 2 DEXAMETHASONE, CORTISOL, ACTIVATOR, NUCLEUS, KEYWDS 3 PHOSPHOPROTEIN, POLYMORPHISM, TRANSCRIPTION, TRANSCRIPTION KEYWDS 4 REGULATION, HORMONE/HORMONE ACTIVATOR COMPLEX
EXPDTA X-RAY DIFFRACTION
AUTHOR E.A.ORTLUND
REVDAT 3 13-OCT-09 3GN8 1 JRNL REVDAT 2 29-SEP-09 3GN8 1 JRNL REVDAT 1 22-SEP-09 3GN8 0
JRNL AUTH J.T.BRIDGHAM,E.A.ORTLUND,J.W.THORNTON JRNL TITL AN EPISTATIC RATCHET CONSTRAINS THE DIRECTION OF JRNL TITL 2 GLUCOCORTICOID RECEPTOR EVOLUTION JRNL REF NATURE V. 461 515 2009 JRNL REFN ISSN 0028-0836 JRNL PMID 19779450 JRNL DOI 10.1038/NATURE08249
REMARK 1
REMARK 2 REMARK 2 RESOLUTION. 2.50 ANGSTROMS.
REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 49.01 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 29216 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.199 REMARK 3 R VALUE (WORKING SET) : 0.196 REMARK 3 FREE R VALUE : 0.255 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1550 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.50 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.56 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2174 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.00 REMARK 3 BIN R VALUE (WORKING SET) : 0.2690 REMARK 3 BIN FREE R VALUE SET COUNT : 103 REMARK 3 BIN FREE R VALUE : 0.3530 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4213 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 56 REMARK 3 SOLVENT ATOMS : 154 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 52.20 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 39.64 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.38000 REMARK 3 B22 (A**2) : 0.38000 REMARK 3 B33 (A**2) : -0.57000 REMARK 3 B12 (A**2) : 0.19000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.252 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.174 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 17.599 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.945 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.903 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4362 ; 0.012 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5908 ; 1.434 ; 2.000 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 517 ; 5.312 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 188 ;37.805 ;24.362 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 813 ;19.753 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 22 ;17.842 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 665 ; 0.101 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3182 ; 0.005 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 2072 ; 0.207 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 3041 ; 0.314 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 187 ; 0.160 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 48 ; 0.233 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 12 ; 0.157 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2679 ; 0.895 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 4195 ; 1.499 ; 2.000 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1927 ; 3.979 ; 3.000 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1713 ; 3.507 ; 4.500 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): 4606 ; 4.170 ; 3.000 REMARK 3 SPHERICITY; FREE ATOMS (A**2): 154 ; 3.867 ; 3.000 REMARK 3 SPHERICITY; BONDED ATOMS (A**2): 4270 ; 2.404 ; 3.000 REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE REMARK 3 RIDING POSITIONS
REMARK 4 REMARK 4 3GN8 COMPLIES WITH FORMAT V. 3.20, 01-DEC-08
REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 18-MAR-09. REMARK 100 THE RCSB ID CODE IS RCSB052071.
REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 19-APR-08 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.4 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 22-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL SI-220 REMARK 200 OPTICS : DOUBLE CRYSTAL MONOCHROMATOR REMARK 200 SI-220 REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MAR SCANNER 300 MM PLATE REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 30813 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.500 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 7.300 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.11500 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.59 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 7.30 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.44000 REMARK 200 <I/SIGMA(I)> FOR SHELL : 5.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 2Q1H REMARK 200 REMARK 200 REMARK: NULL
REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 66.09 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.63 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.5-0.75M AMMONIUM ACETATE, PH 7.4, REMARK 280 VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 298K
REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 61 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+5/6 REMARK 290 6555 X-Y,X,Z+1/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 48.05533 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 96.11067 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 72.08300 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 120.13833 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 24.02767 REMARK 290 REMARK 290 REMARK: NULL
REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA.
REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1910 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 12350 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -8.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1960 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 12410 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -8.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: E, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000
REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 PRO C 734 REMARK 465 VAL C 735 REMARK 465 SER C 736 REMARK 465 PRO C 737 REMARK 465 LYS C 738 REMARK 465 LYS C 739 REMARK 465 LYS C 740 REMARK 465 GLU C 741 REMARK 465 ASP C 753 REMARK 465 THR C 754 REMARK 465 PRO E 734 REMARK 465 VAL E 735 REMARK 465 SER E 736 REMARK 465 PRO E 737 REMARK 465 LYS E 738 REMARK 465 LYS E 739 REMARK 465 LYS E 740 REMARK 465 ASP E 753 REMARK 465 THR E 754
REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS(M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU E 741 CG CD OE1 OE2
REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 CYS B 91 CB CYS B 91 SG 0.114 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 85 27.06 -151.42 REMARK 500 LEU A 96 81.53 -150.24 REMARK 500 SER B 85 19.79 -143.86 REMARK 500 LEU B 105 147.99 -39.64 REMARK 500 PRO B 106 -87.82 -31.44 REMARK 500 SER B 151 51.23 -111.42 REMARK 500 ASN B 176 42.00 -78.18 REMARK 500 LYS E 751 -179.02 -66.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CHIRAL CENTERS REMARK 500 REMARK 500 UNEXPECTED CONFIGURATION OF THE FOLLOWING CHIRAL REMARK 500 CENTER(S) USING IMPROPER CA--C--CB--N CHIRALITY REMARK 500 M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (11X,I3,1X,A3,1X,A1,I4,A1,6X,F5.1,6X,A1,10X,A1,3X,A16) REMARK 500 REMARK 500 M RES CSSEQI IMPROPER EXPECTED FOUND DETAILS REMARK 500 ASP E 750 23.0 L L OUTSIDE RANGE REMARK 500 REMARK 500 REMARK: NULL
REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE DEX A 247 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE DEX B 247
DBREF 3GN8 C 734 754 UNP Q15596 NCOA2_HUMAN 734 754 DBREF 3GN8 E 734 754 UNP Q15596 NCOA2_HUMAN 734 754 DBREF 3GN8 A -2 246 PDB 3GN8 3GN8 -2 246 DBREF 3GN8 B -2 246 PDB 3GN8 3GN8 -2 246
SEQRES 1 A 249 ALA PRO THR LEU ILE SER LEU LEU GLU VAL ILE GLU PRO SEQRES 2 A 249 GLU VAL LEU TYR SER GLY TYR ASP SER THR LEU PRO ASP SEQRES 3 A 249 THR SER THR ARG LEU MET SER THR LEU ASN ARG LEU GLY SEQRES 4 A 249 GLY ARG GLN VAL VAL SER ALA VAL LYS TRP ALA LYS ALA SEQRES 5 A 249 LEU PRO GLY PHE ARG ASN LEU HIS LEU ASP ASP GLN MET SEQRES 6 A 249 THR LEU LEU GLN TYR SER TRP MET SER LEU MET ALA PHE SEQRES 7 A 249 SER LEU GLY TRP ARG SER TYR LYS GLN SER ASN GLY ASN SEQRES 8 A 249 MET LEU CYS PHE ALA PRO ASP LEU VAL ILE ASN GLU GLU SEQRES 9 A 249 ARG MET GLN LEU PRO TYR MET TYR ASP GLN CYS GLN GLN SEQRES 10 A 249 MET LEU LYS ILE SER SER GLU PHE VAL ARG LEU GLN VAL SEQRES 11 A 249 SER TYR ASP GLU TYR LEU CYS MET LYS VAL LEU LEU LEU SEQRES 12 A 249 LEU SER THR VAL PRO LYS ASP GLY LEU LYS SER GLN ALA SEQRES 13 A 249 VAL PHE ASP GLU ILE ARG MET THR TYR ILE LYS GLU LEU SEQRES 14 A 249 GLY LYS ALA ILE VAL LYS ARG GLU GLY ASN SER SER GLN SEQRES 15 A 249 ASN TRP GLN ARG PHE TYR GLN LEU THR LYS LEU LEU ASP SEQRES 16 A 249 SER MET HIS GLU MET VAL GLY GLY LEU LEU GLN PHE CYS SEQRES 17 A 249 PHE TYR THR PHE VAL ASN LYS SER LEU SER VAL GLU PHE SEQRES 18 A 249 PRO GLU MET LEU ALA GLU ILE ILE SER ASN GLN LEU PRO SEQRES 19 A 249 LYS PHE LYS ALA GLY SER VAL LYS PRO LEU LEU PHE HIS SEQRES 20 A 249 GLN LYS SEQRES 1 B 249 ALA PRO THR LEU ILE SER LEU LEU GLU VAL ILE GLU PRO SEQRES 2 B 249 GLU VAL LEU TYR SER GLY TYR ASP SER THR LEU PRO ASP SEQRES 3 B 249 THR SER THR ARG LEU MET SER THR LEU ASN ARG LEU GLY SEQRES 4 B 249 GLY ARG GLN VAL VAL SER ALA VAL LYS TRP ALA LYS ALA SEQRES 5 B 249 LEU PRO GLY PHE ARG ASN LEU HIS LEU ASP ASP GLN MET SEQRES 6 B 249 THR LEU LEU GLN TYR SER TRP MET SER LEU MET ALA PHE SEQRES 7 B 249 SER LEU GLY TRP ARG SER TYR LYS GLN SER ASN GLY ASN SEQRES 8 B 249 MET LEU CYS PHE ALA PRO ASP LEU VAL ILE ASN GLU GLU SEQRES 9 B 249 ARG MET GLN LEU PRO TYR MET TYR ASP GLN CYS GLN GLN SEQRES 10 B 249 MET LEU LYS ILE SER SER GLU PHE VAL ARG LEU GLN VAL SEQRES 11 B 249 SER TYR ASP GLU TYR LEU CYS MET LYS VAL LEU LEU LEU SEQRES 12 B 249 LEU SER THR VAL PRO LYS ASP GLY LEU LYS SER GLN ALA SEQRES 13 B 249 VAL PHE ASP GLU ILE ARG MET THR TYR ILE LYS GLU LEU SEQRES 14 B 249 GLY LYS ALA ILE VAL LYS ARG GLU GLY ASN SER SER GLN SEQRES 15 B 249 ASN TRP GLN ARG PHE TYR GLN LEU THR LYS LEU LEU ASP SEQRES 16 B 249 SER MET HIS GLU MET VAL GLY GLY LEU LEU GLN PHE CYS SEQRES 17 B 249 PHE TYR THR PHE VAL ASN LYS SER LEU SER VAL GLU PHE SEQRES 18 B 249 PRO GLU MET LEU ALA GLU ILE ILE SER ASN GLN LEU PRO SEQRES 19 B 249 LYS PHE LYS ALA GLY SER VAL LYS PRO LEU LEU PHE HIS SEQRES 20 B 249 GLN LYS SEQRES 1 C 21 PRO VAL SER PRO LYS LYS LYS GLU ASN ALA LEU LEU ARG SEQRES 2 C 21 TYR LEU LEU ASP LYS ASP ASP THR SEQRES 1 E 21 PRO VAL SER PRO LYS LYS LYS GLU ASN ALA LEU LEU ARG SEQRES 2 E 21 TYR LEU LEU ASP LYS ASP ASP THR
HET DEX A 247 28 HET DEX B 247 28
HETNAM DEX DEXAMETHASONE
HETSYN DEX 9A-FLUORO-16BETA-METHYLPREDNISOLONE
FORMUL 5 DEX 2(C22 H29 F O5) FORMUL 7 HOH *154(H2 O)
HELIX 1 1 THR A 0 ILE A 8 1 9 HELIX 2 2 THR A 24 ALA A 49 1 26 HELIX 3 3 GLY A 52 LEU A 56 5 5 HELIX 4 4 HIS A 57 ASN A 86 1 30 HELIX 5 5 ASN A 99 LEU A 105 5 7 HELIX 6 6 MET A 108 GLN A 126 1 19 HELIX 7 7 SER A 128 LEU A 141 1 14 HELIX 8 8 SER A 151 GLY A 175 1 25 HELIX 9 9 GLN A 179 ASN A 211 1 33 HELIX 10 10 LYS A 212 SER A 215 5 4 HELIX 11 11 PRO A 219 ALA A 235 1 17 HELIX 12 12 THR B 0 ILE B 8 1 9 HELIX 13 13 THR B 24 ALA B 49 1 26 HELIX 14 14 GLY B 52 LEU B 56 5 5 HELIX 15 15 HIS B 57 ASN B 86 1 30 HELIX 16 16 GLU B 101 TYR B 107 5 7 HELIX 17 17 MET B 108 GLN B 126 1 19 HELIX 18 18 SER B 128 LEU B 141 1 14 HELIX 19 19 SER B 151 GLY B 175 1 25 HELIX 20 20 GLN B 179 ASN B 211 1 33 HELIX 21 21 LYS B 212 SER B 215 5 4 HELIX 22 22 PRO B 219 GLY B 236 1 18 HELIX 23 23 ASN C 742 LYS C 751 1 10 HELIX 24 24 ASN E 742 LYS E 751 1 10
SHEET 1 A 2 LEU A 90 ALA A 93 0 SHEET 2 A 2 LEU A 96 ILE A 98 -1 O ILE A 98 N LEU A 90 SHEET 1 B 2 THR A 143 PRO A 145 0 SHEET 2 B 2 VAL A 238 PRO A 240 -1 O LYS A 239 N VAL A 144 SHEET 1 C 2 LEU B 90 ALA B 93 0 SHEET 2 C 2 LEU B 96 ILE B 98 -1 O ILE B 98 N LEU B 90 SHEET 1 D 2 THR B 143 PRO B 145 0 SHEET 2 D 2 VAL B 238 PRO B 240 -1 O LYS B 239 N VAL B 144
SITE 1 AC1 14 MET A 29 LEU A 32 ASN A 33 GLY A 36 SITE 2 AC1 14 GLN A 39 ARG A 80 PHE A 92 GLN A 111 SITE 3 AC1 14 MET A 115 PHE A 204 CYS A 205 THR A 208 SITE 4 AC1 14 VAL A 216 HOH A 251 SITE 1 AC2 13 LEU B 32 ASN B 33 GLY B 36 GLN B 39 SITE 2 AC2 13 ARG B 80 PHE B 92 GLN B 111 MET B 115 SITE 3 AC2 13 PHE B 204 CYS B 205 THR B 208 VAL B 216 SITE 4 AC2 13 HOH B 267
CRYST1 104.218 104.218 144.166 90.00 90.00 120.00 P 61 12
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 0.009595 0.005540 0.000000 0.00000
SCALE2 0.000000 0.011080 0.000000 0.00000
SCALE3 0.000000 0.000000 0.006936 0.00000