10 20 30 40 50 60 70 80 3GHU - Header ----|----|----|----|----|----|----|----|----|----|----|----|----|----|----|----| Asymmetric UnitHEADER OXIDOREDUCTASE 04-MAR-09 3GHU
TITLE HUMAN ALDOSE REDUCTASE IN COMPLEX WITH NADP+ AND THE TITLE 2 INHIBITOR IDD594. INVESTIGATION OF GLOBAL EFFECTS OF TITLE 3 RADIATION DAMAGE ON PROTEIN STRUCTURE. FORTH STAGE OF TITLE 4 RADIATION DAMAGE.
COMPND MOL_ID: 1; COMPND 2 MOLECULE: ALDOSE REDUCTASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: AR, ALDEHYDE REDUCTASE; COMPND 5 EC: 1.1.1.21; COMPND 6 ENGINEERED: YES
SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: AKR1B1, ALDR1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562
KEYWDS OXIDOREDUCTASE, ACETYLATION, CATARACT, CYTOPLASM, NADP, KEYWDS 2 PHOSPHOPROTEIN, POLYMORPHISM
EXPDTA X-RAY DIFFRACTION
AUTHOR T.PETROVA,S.GINELL,I.HAZEMANN,A.MITSCHLER,A.PODJARNY, AUTHOR 2 A.JOACHIMIAK
REVDAT 2 30-JUN-09 3GHU 1 JRNL REVDAT 1 24-MAR-09 3GHU 0
JRNL AUTH T.PETROVA,V.Y.LUNIN,S.GINELL,I.HAZEMANN,K.LAZARSKI, JRNL AUTH 2 A.MITSCHLER,A.PODJARNY,A.JOACHIMIAK JRNL TITL X-RAY-RADIATION-INDUCED COOPERATIVE ATOMIC JRNL TITL 2 MOVEMENTS IN PROTEIN. JRNL REF J.MOL.BIOL. V. 387 1092 2009 JRNL REFN ISSN 0022-2836 JRNL PMID 19233199 JRNL DOI 10.1016/J.JMB.2009.02.030
REMARK 1
REMARK 2 REMARK 2 RESOLUTION. 1.20 ANGSTROMS.
REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : SHELXL-97 REMARK 3 AUTHORS : G.M.SHELDRICK REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.20 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 4.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 84.9 REMARK 3 CROSS-VALIDATION METHOD : NULL REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (NO CUTOFF). REMARK 3 R VALUE (WORKING + TEST SET, NO CUTOFF) : 0.102 REMARK 3 R VALUE (WORKING SET, NO CUTOFF) : NULL REMARK 3 FREE R VALUE (NO CUTOFF) : 0.137 REMARK 3 FREE R VALUE TEST SET SIZE (%, NO CUTOFF) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT (NO CUTOFF) : 3884 REMARK 3 TOTAL NUMBER OF REFLECTIONS (NO CUTOFF) : 92143 REMARK 3 REMARK 3 FIT/AGREEMENT OF MODEL FOR DATA WITH F>4SIG(F). REMARK 3 R VALUE (WORKING + TEST SET, F>4SIG(F)) : NULL REMARK 3 R VALUE (WORKING SET, F>4SIG(F)) : NULL REMARK 3 FREE R VALUE (F>4SIG(F)) : NULL REMARK 3 FREE R VALUE TEST SET SIZE (%, F>4SIG(F)) : NULL REMARK 3 FREE R VALUE TEST SET COUNT (F>4SIG(F)) : NULL REMARK 3 TOTAL NUMBER OF REFLECTIONS (F>4SIG(F)) : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3043 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 85 REMARK 3 SOLVENT ATOMS : 671 REMARK 3 REMARK 3 MODEL REFINEMENT. REMARK 3 OCCUPANCY SUM OF NON-HYDROGEN ATOMS : NULL REMARK 3 OCCUPANCY SUM OF HYDROGEN ATOMS : NULL REMARK 3 NUMBER OF DISCRETELY DISORDERED RESIDUES : NULL REMARK 3 NUMBER OF LEAST-SQUARES PARAMETERS : NULL REMARK 3 NUMBER OF RESTRAINTS : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM RESTRAINT TARGET VALUES. REMARK 3 BOND LENGTHS (A) : NULL REMARK 3 ANGLE DISTANCES (A) : NULL REMARK 3 SIMILAR DISTANCES (NO TARGET VALUES) (A) : NULL REMARK 3 DISTANCES FROM RESTRAINT PLANES (A) : NULL REMARK 3 ZERO CHIRAL VOLUMES (A**3) : NULL REMARK 3 NON-ZERO CHIRAL VOLUMES (A**3) : NULL REMARK 3 ANTI-BUMPING DISTANCE RESTRAINTS (A) : NULL REMARK 3 RIGID-BOND ADP COMPONENTS (A**2) : NULL REMARK 3 SIMILAR ADP COMPONENTS (A**2) : NULL REMARK 3 APPROXIMATELY ISOTROPIC ADPS (A**2) : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED: NULL REMARK 3 REMARK 3 STEREOCHEMISTRY TARGET VALUES : ENGH & HUBER REMARK 3 SPECIAL CASE: NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL
REMARK 4 REMARK 4 3GHU COMPLIES WITH FORMAT V. 3.20, 01-DEC-08
REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 09-MAR-09. REMARK 100 THE RCSB ID CODE IS RCSB051878.
REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 20-AUG-07 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.91996 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL MONOCHROMATOR REMARK 200 UTILIZING A SI-111 AND SAGITAL REMARK 200 HORIZONTAL FOCUSING REMARK 200 OPTICS : 1.02-M FLAT MIRROR MADE OF REMARK 200 ZERODUR PROVIDING VERTICAL REMARK 200 FOCUSING AND REJECTION OF REMARK 200 HARMONIC CONTAMINATION REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM Q315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000 REMARK 200 DATA SCALING SOFTWARE : HKL-3000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 92143 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.200 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.5 REMARK 200 DATA REDUNDANCY : 3.700 REMARK 200 R MERGE (I) : 0.02300 REMARK 200 R SYM (I) : 0.03300 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 33.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.20 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.23 REMARK 200 COMPLETENESS FOR SHELL (%) : 93.1 REMARK 200 DATA REDUNDANCY IN SHELL : 3.40 REMARK 200 R MERGE FOR SHELL (I) : 0.34500 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 3.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: 1US0 REMARK 200 REMARK 200 REMARK: NULL
REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 43.65 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.18 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: THE CO-CRYSTALLIZATION WITH IDD594 REMARK 280 WAS CARRIED OUT AT ROOM TEMPERATURE (RATIOS PROTEIN/COENZYME/ REMARK 280 INHIBITOR = 1/2/2), PH 5.0, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 277K
REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 33.41500 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL
REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA.
REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000
REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS(M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 307 CE NZ REMARK 470 GLU A 313 CD OE1 OE2 REMARK 470 GLU A 314 CD OE1 OE2
REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 LYS A 119 CE NZ REMARK 480 GLU A 126 CD OE1 OE2
REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU A 51 CD GLU A 51 OE1 0.076 REMARK 500 GLU A 53 CD GLU A 53 OE1 0.131 REMARK 500 LYS A 94 CB LYS A 94 CG 0.179 REMARK 500 ASP A 98 CG ASP A 98 OD1 0.308 REMARK 500 ASP A 98 CG ASP A 98 OD1 -0.157 REMARK 500 ASP A 98 CG ASP A 98 OD2 0.212 REMARK 500 ASP A 125 CG ASP A 125 OD2 0.188 REMARK 500 ASP A 139 CG ASP A 139 OD1 0.183 REMARK 500 ASP A 139 CG ASP A 139 OD2 -0.245 REMARK 500 GLU A 145 CD GLU A 145 OE1 0.073 REMARK 500 ASP A 149 CG ASP A 149 OD1 0.156 REMARK 500 ASP A 216 CG ASP A 216 OD1 0.199 REMARK 500 ASP A 284 CG ASP A 284 OD2 0.190 REMARK 500 PHE A 315 C PHE A 315 OXT 0.257 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 GLU A 60 OE1 - CD - OE2 ANGL. DEV. = -8.3 DEGREES REMARK 500 GLU A 60 CG - CD - OE1 ANGL. DEV. = 13.1 DEGREES REMARK 500 GLU A 64 OE1 - CD - OE2 ANGL. DEV. = -8.6 DEGREES REMARK 500 ASP A 98 OD1 - CG - OD2 ANGL. DEV. = -23.6 DEGREES REMARK 500 ASP A 98 OD1 - CG - OD2 ANGL. DEV. = 14.2 DEGREES REMARK 500 ASP A 98 CB - CG - OD1 ANGL. DEV. = 17.5 DEGREES REMARK 500 ASP A 98 CB - CG - OD2 ANGL. DEV. = 6.2 DEGREES REMARK 500 ASP A 98 CB - CG - OD2 ANGL. DEV. = -16.2 DEGREES REMARK 500 PHE A 115 CB - CG - CD1 ANGL. DEV. = 5.3 DEGREES REMARK 500 ASP A 125 CB - CG - OD1 ANGL. DEV. = 7.9 DEGREES REMARK 500 ASP A 125 CB - CG - OD2 ANGL. DEV. = -8.2 DEGREES REMARK 500 ASP A 139 CB - CG - OD1 ANGL. DEV. = -8.2 DEGREES REMARK 500 ASP A 139 CB - CG - OD2 ANGL. DEV. = 11.0 DEGREES REMARK 500 ASP A 149 CB - CG - OD1 ANGL. DEV. = -5.7 DEGREES REMARK 500 ASP A 149 CB - CG - OD2 ANGL. DEV. = 11.1 DEGREES REMARK 500 GLU A 167 OE1 - CD - OE2 ANGL. DEV. = -22.6 DEGREES REMARK 500 GLU A 167 CG - CD - OE2 ANGL. DEV. = 20.2 DEGREES REMARK 500 MET A 168 CA - CB - CG ANGL. DEV. = 10.8 DEGREES REMARK 500 TYR A 189 CB - CG - CD1 ANGL. DEV. = 3.7 DEGREES REMARK 500 TYR A 209 CA - CB - CG ANGL. DEV. = 12.4 DEGREES REMARK 500 ARG A 217 CD - NE - CZ ANGL. DEV. = 9.0 DEGREES REMARK 500 ASP A 224 CB - CG - OD2 ANGL. DEV. = 7.2 DEGREES REMARK 500 ARG A 268 NE - CZ - NH2 ANGL. DEV. = -3.6 DEGREES REMARK 500 ASP A 284 CB - CG - OD1 ANGL. DEV. = -6.8 DEGREES REMARK 500 ASP A 284 CB - CG - OD2 ANGL. DEV. = 5.8 DEGREES REMARK 500 ARG A 293 NE - CZ - NH1 ANGL. DEV. = -3.7 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 21 -1.00 79.20 REMARK 500 PRO A 222 -87.24 -3.61 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 GLN A 26 0.22 SIDE_CHAIN REMARK 500 REMARK 500 REMARK: NULL
REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A2202 DISTANCE = 5.49 ANGSTROMS REMARK 525 HOH A2453 DISTANCE = 5.81 ANGSTROMS REMARK 525 HOH A2500 DISTANCE = 7.00 ANGSTROMS REMARK 525 HOH A2547 DISTANCE = 5.96 ANGSTROMS REMARK 525 HOH A6063 DISTANCE = 5.46 ANGSTROMS REMARK 525 HOH A6067 DISTANCE = 6.79 ANGSTROMS REMARK 525 HOH A8063 DISTANCE = 7.58 ANGSTROMS
REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NDP A 318 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE LDT A 320 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CIT A 450
REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1US0 RELATED DB: PDB REMARK 900 HUMAN ALDOSE REDUCTASE IN COMPLEX WITH NADP+ AND THE REMARK 900 INHIBITOR IDD594 AT 0.66 ANGSTROM REMARK 900 RELATED ID: 2I16 RELATED DB: PDB REMARK 900 HUMAN ALDOSE REDUCTASE IN COMPLEX WITH NADP+ AND THE REMARK 900 INHIBITOR IDD594 AT TEMPERATURE OF 15K REMARK 900 RELATED ID: 2I17 RELATED DB: PDB REMARK 900 HUMAN ALDOSE REDUCTASE IN COMPLEX WITH NADP+ AND THE REMARK 900 INHIBITOR IDD594 AT TEMPERATURE OF 60K REMARK 900 RELATED ID: 2PEV RELATED DB: PDB REMARK 900 COMPLEX OF ALDOSE REDUCTASE WITH NADP+ AND SIMALTANEOUSLY REMARK 900 BOUND COMPETETIVE INHIBITORS FIDARESTAT AND IDD594. REMARK 900 CONCENTRATION OF FIDARESTAT IN SOAKING SOLUTION EXCEEDS REMARK 900 CONCENTRATION OF IDD594 REMARK 900 RELATED ID: 2PF8 RELATED DB: PDB REMARK 900 COMPLEX OF ALDOSE REDUCTASE WITH NADP+ AND SIMALTANEOUSLY REMARK 900 BOUND COMPETETIVE INHIBITORS FIDARESTAT AND IDD594. REMARK 900 CONCENTRATION OF FIDARESTAT IN SOAKING SOLUTION IS EQUAL TO REMARK 900 CONCENTRATION OF IDD594 REMARK 900 RELATED ID: 2PFH RELATED DB: PDB REMARK 900 COMPLEX OF ALDOSE REDUCTASE WITH NADP+ AND SIMALTANEOUSLY REMARK 900 BOUND COMPETETIVE INHIBITORS FIDARESTAT AND IDD594. REMARK 900 CONCENTRATION OF FIDARESTAT IN SOAKING SOLUTION IS LESS REMARK 900 THAN CONCENTRATION OF IDD594 REMARK 900 RELATED ID: 3GHR RELATED DB: PDB REMARK 900 HUMAN ALDOSE REDUCTASE IN COMPLEX WITH NADP+ AND THE REMARK 900 INHIBITOR IDD594. INVESTIGATION OF GLOBAL EFFECTS OF REMARK 900 RADIATION DAMAGE ON PROTEIN STRUCTURE. FIRST STAGE OF REMARK 900 RADIATION DAMAGE REMARK 900 RELATED ID: 3GHS RELATED DB: PDB REMARK 900 HUMAN ALDOSE REDUCTASE IN COMPLEX WITH NADP+ AND THE REMARK 900 INHIBITOR IDD594. INVESTIGATION OF GLOBAL EFFECTS OF REMARK 900 RADIATION DAMAGE ON PROTEIN STRUCTURE. SECOND STAGE OF REMARK 900 RADIATION DAMAGE REMARK 900 RELATED ID: 3GHT RELATED DB: PDB REMARK 900 HUMAN ALDOSE REDUCTASE IN COMPLEX WITH NADP+ AND THE REMARK 900 INHIBITOR IDD594. INVESTIGATION OF GLOBAL EFFECTS OF REMARK 900 RADIATION DAMAGE ON PROTEIN STRUCTURE. THIRD STAGE OF REMARK 900 RADIATION DAMAGE
REMARK 999 REMARK 999 SEQUENCE REMARK 999 AUTHORS STATE THAT RESIDUE NUMBER 4 IS ILE. ELECTRON DENSITY FOR REMARK 999 THIS RESIDUE IS VERY CLEAR
DBREF 3GHU A 0 315 UNP P15121 ALDR_HUMAN 1 316
SEQADV 3GHU ILE A 4 UNP P15121 LEU 5 SEE REMARK 999
SEQRES 1 A 316 MET ALA SER ARG ILE LEU LEU ASN ASN GLY ALA LYS MET SEQRES 2 A 316 PRO ILE LEU GLY LEU GLY THR TRP LYS SER PRO PRO GLY SEQRES 3 A 316 GLN VAL THR GLU ALA VAL LYS VAL ALA ILE ASP VAL GLY SEQRES 4 A 316 TYR ARG HIS ILE ASP CYS ALA HIS VAL TYR GLN ASN GLU SEQRES 5 A 316 ASN GLU VAL GLY VAL ALA ILE GLN GLU LYS LEU ARG GLU SEQRES 6 A 316 GLN VAL VAL LYS ARG GLU GLU LEU PHE ILE VAL SER LYS SEQRES 7 A 316 LEU TRP CYS THR TYR HIS GLU LYS GLY LEU VAL LYS GLY SEQRES 8 A 316 ALA CYS GLN LYS THR LEU SER ASP LEU LYS LEU ASP TYR SEQRES 9 A 316 LEU ASP LEU TYR LEU ILE HIS TRP PRO THR GLY PHE LYS SEQRES 10 A 316 PRO GLY LYS GLU PHE PHE PRO LEU ASP GLU SER GLY ASN SEQRES 11 A 316 VAL VAL PRO SER ASP THR ASN ILE LEU ASP THR TRP ALA SEQRES 12 A 316 ALA MET GLU GLU LEU VAL ASP GLU GLY LEU VAL LYS ALA SEQRES 13 A 316 ILE GLY ILE SER ASN PHE ASN HIS LEU GLN VAL GLU MET SEQRES 14 A 316 ILE LEU ASN LYS PRO GLY LEU LYS TYR LYS PRO ALA VAL SEQRES 15 A 316 ASN GLN ILE GLU CYS HIS PRO TYR LEU THR GLN GLU LYS SEQRES 16 A 316 LEU ILE GLN TYR CYS GLN SER LYS GLY ILE VAL VAL THR SEQRES 17 A 316 ALA TYR SER PRO LEU GLY SER PRO ASP ARG PRO TRP ALA SEQRES 18 A 316 LYS PRO GLU ASP PRO SER LEU LEU GLU ASP PRO ARG ILE SEQRES 19 A 316 LYS ALA ILE ALA ALA LYS HIS ASN LYS THR THR ALA GLN SEQRES 20 A 316 VAL LEU ILE ARG PHE PRO MET GLN ARG ASN LEU VAL VAL SEQRES 21 A 316 ILE PRO LYS SER VAL THR PRO GLU ARG ILE ALA GLU ASN SEQRES 22 A 316 PHE LYS VAL PHE ASP PHE GLU LEU SER SER GLN ASP MET SEQRES 23 A 316 THR THR LEU LEU SER TYR ASN ARG ASN TRP ARG VAL CYS SEQRES 24 A 316 ALA LEU LEU SER CYS THR SER HIS LYS ASP TYR PRO PHE SEQRES 25 A 316 HIS GLU GLU PHE
HET NDP A 318 48 HET LDT A 320 24 HET CIT A 450 13
HETNAM NDP NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE HETNAM 2 NDP PHOSPHATE HETNAM LDT IDD594 HETNAM CIT CITRIC ACID
HETSYN LDT [2-(4-BROMO-2-FLUORO-BENZYLTHIOCARBAMOYL)-5-FLUORO- HETSYN 2 LDT PHENOXY]-ACETIC ACID
FORMUL 2 NDP C21 H30 N7 O17 P3 FORMUL 3 LDT C16 H12 BR F2 N O3 S FORMUL 4 CIT C6 H8 O7 FORMUL 5 HOH *630(H2 O)
HELIX 1 1 PRO A 23 GLY A 38 1 16 HELIX 2 2 ALA A 45 GLN A 49 5 5 HELIX 3 3 ASN A 50 GLU A 64 1 15 HELIX 4 4 LYS A 68 LEU A 72 5 5 HELIX 5 5 TRP A 79 HIS A 83 5 5 HELIX 6 6 LEU A 87 LYS A 100 1 14 HELIX 7 7 ASN A 136 GLU A 150 1 15 HELIX 8 8 ASN A 162 ASN A 171 1 10 HELIX 9 9 GLN A 192 LYS A 202 1 11 HELIX 10 10 SER A 226 GLU A 229 5 4 HELIX 11 11 ASP A 230 HIS A 240 1 11 HELIX 12 12 THR A 243 ARG A 255 1 13 HELIX 13 13 THR A 265 LYS A 274 1 10 HELIX 14 14 SER A 281 SER A 290 1 10 HELIX 15 15 LEU A 300 THR A 304 5 5
SHEET 1 A 2 ARG A 3 LEU A 5 0 SHEET 2 A 2 LYS A 11 PRO A 13 -1 O MET A 12 N ILE A 4 SHEET 1 B 8 LEU A 17 GLY A 18 0 SHEET 2 B 8 HIS A 41 ASP A 43 1 O ASP A 43 N LEU A 17 SHEET 3 B 8 PHE A 73 LEU A 78 1 O VAL A 75 N ILE A 42 SHEET 4 B 8 LEU A 106 ILE A 109 1 O LEU A 108 N LEU A 78 SHEET 5 B 8 ILE A 156 SER A 159 1 O GLY A 157 N ILE A 109 SHEET 6 B 8 VAL A 181 GLU A 185 1 O VAL A 181 N ILE A 158 SHEET 7 B 8 VAL A 205 TYR A 209 1 O THR A 207 N ILE A 184 SHEET 8 B 8 VAL A 258 VAL A 259 1 O VAL A 258 N ALA A 208
SITE 1 AC1 38 GLY A 18 THR A 19 TRP A 20 LYS A 21 SITE 2 AC1 38 ASP A 43 TYR A 48 HIS A 110 SER A 159 SITE 3 AC1 38 ASN A 160 GLN A 183 TYR A 209 SER A 210 SITE 4 AC1 38 PRO A 211 LEU A 212 GLY A 213 SER A 214 SITE 5 AC1 38 PRO A 215 ASP A 216 LEU A 228 ALA A 245 SITE 6 AC1 38 ILE A 260 PRO A 261 LYS A 262 SER A 263 SITE 7 AC1 38 VAL A 264 THR A 265 ARG A 268 GLU A 271 SITE 8 AC1 38 ASN A 272 LDT A 320 HOH A2141 HOH A2182 SITE 9 AC1 38 HOH A2185 HOH A2233 HOH A2633 HOH A4504 SITE 10 AC1 38 HOH A4505 HOH A4506 SITE 1 AC2 10 TRP A 20 VAL A 47 TYR A 48 HIS A 110 SITE 2 AC2 10 TRP A 111 THR A 113 PHE A 122 ALA A 299 SITE 3 AC2 10 LEU A 300 NDP A 318 SITE 1 AC3 15 GLN A 49 GLU A 51 ASN A 52 GLU A 53 SITE 2 AC3 15 LYS A 94 ASP A 98 HOH A 460 HOH A 461 SITE 3 AC3 15 HOH A 462 HOH A 463 HOH A 466 HOH A 471 SITE 4 AC3 15 HOH A2042 HOH A6037 HOH A8040
CRYST1 49.549 66.830 47.362 90.00 92.22 90.00 P 1 21 1 2
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 0.020182 0.000000 0.000782 0.00000
SCALE2 0.000000 0.014963 0.000000 0.00000
SCALE3 0.000000 0.000000 0.021130 0.00000