10 20 30 40 50 60 70 80 3GHP - Header ----|----|----|----|----|----|----|----|----|----|----|----|----|----|----|----| Asymmetric UnitHEADER STRUCTURAL PROTEIN 04-MAR-09 3GHP
TITLE STRUCTURE OF THE SECOND TYPE II COHESIN MODULE FROM THE ADAPTOR SCAA TITLE 2 SCAFFOLDIN OF ACETIVIBRIO CELLULOLYTICUS (INCLUDING LONG C-TERMINAL TITLE 3 LINKER)
COMPND MOL_ID: 1; COMPND 2 MOLECULE: CELLULOSOMAL SCAFFOLDIN ADAPTOR PROTEIN B; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: COHESIN MODULE RESIDUES 190-408; COMPND 5 ENGINEERED: YES
SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ACETIVIBRIO CELLULOLYTICUS; SOURCE 3 ORGANISM_TAXID: 35830; SOURCE 4 GENE: SCAB; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3)PLYSS; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET28A
KEYWDS LINKER SEGMENTS, BETA BARREL, ALPHA HELIX, BETA FLAPS, STRUCTURAL KEYWDS 2 PROTEIN
EXPDTA X-RAY DIFFRACTION
AUTHOR I.NOACH,F.FROLOW,E.A.BAYER
REVDAT 2 12-FEB-14 3GHP 1 JRNL VERSN REVDAT 1 23-JUN-09 3GHP 0
JRNL AUTH I.NOACH,F.FROLOW,O.ALBER,R.LAMED,L.J.W.SHIMON,E.A.BAYER JRNL TITL INTERMODULAR LINKER FLEXIBILITY REVEALED FROM CRYSTAL JRNL TITL 2 STRUCTURES OF ADJACENT CELLULOSOMAL COHESINS OF ACETIVIBRIO JRNL TITL 3 CELLULOLYTICUS JRNL REF J.MOL.BIOL. V. 391 86 2009 JRNL REFN ISSN 0022-2836 JRNL PMID 19501595 JRNL DOI 10.1016/J.JMB.2009.06.006
REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH I.NOACH,O.ALBER,E.A.BAYER,R.LAMED,M.LEVY-ASSARAF, REMARK 1 AUTH 2 L.J.W.SHIMON,F.FROLOW REMARK 1 TITL CRYSTALLIZATION AND PRELIMINARY X-RAY ANALYSIS OF REMARK 1 TITL 2 ACETIVIBRIO CELLULOLYTICUS CELLULOSOMAL TYPE II COHESIN REMARK 1 TITL 3 MODULE: TWO VERSIONS HAVING DIFFERENT LINKER LENGTHS REMARK 1 REF ACTA CRYSTALLOGR.,SECT.F V. 64 58 2008 REMARK 1 REFN ESSN 1744-3091 REMARK 1 PMID 18097105 REMARK 1 DOI 10.1107/S1744309107066821
REMARK 2 REMARK 2 RESOLUTION. 2.49 ANGSTROMS.
REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VICENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE- REMARK 3 : KUNSTLEVE,LI-WEI HUNG,ROBERT IMMORMINO, REMARK 3 : TOM IOERGER,AIRLIE MCCOY,ERIK MCKEE,NIGEL REMARK 3 : MORIARTY,REETAL PAI,RANDY READ,JANE REMARK 3 : RICHARDSON,DAVID RICHARDSON,TOD ROMO,JIM REMARK 3 : SACCHETTINI,NICHOLAS SAUTER,JACOB SMITH, REMARK 3 : LAURENT STORONI,TOM TERWILLIGER,PETER REMARK 3 : ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.49 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 42.60 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.900 REMARK 3 COMPLETENESS FOR RANGE (%) : 65.7 REMARK 3 NUMBER OF REFLECTIONS : 12779 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.217 REMARK 3 R VALUE (WORKING SET) : 0.212 REMARK 3 FREE R VALUE : 0.317 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.070 REMARK 3 FREE R VALUE TEST SET COUNT : 648 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 42.6070 - 4.9720 0.84 3286 157 0.1910 0.2950 REMARK 3 2 4.9720 - 3.9470 0.78 3066 157 0.1630 0.2440 REMARK 3 3 3.9470 - 3.4480 0.78 3030 171 0.1960 0.3170 REMARK 3 4 3.4480 - 3.1330 0.81 3176 165 0.2540 0.4160 REMARK 3 5 3.1330 - 2.9090 0.80 3130 174 0.2610 0.3220 REMARK 3 6 2.9090 - 2.7370 0.62 2414 141 0.2790 0.3830 REMARK 3 7 2.7370 - 2.6000 0.40 1567 90 0.2870 0.3980 REMARK 3 8 2.6000 - 2.4870 0.23 896 43 0.2650 0.3980 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : 0.30 REMARK 3 B_SOL : 70.25 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 2.080 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 37.210 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 64.40 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 71.10 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -19.17900 REMARK 3 B22 (A**2) : -0.19100 REMARK 3 B33 (A**2) : 19.37000 REMARK 3 B12 (A**2) : -0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : -0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.010 2945 REMARK 3 ANGLE : 1.481 3986 REMARK 3 CHIRALITY : 0.098 471 REMARK 3 PLANARITY : 0.007 503 REMARK 3 DIHEDRAL : 20.370 1049 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: all REMARK 3 ORIGIN FOR THE GROUP (A): 4.0121 -31.0123 13.8960 REMARK 3 T TENSOR REMARK 3 T11: -0.0189 T22: -0.0794 REMARK 3 T33: -0.0539 T12: -0.0244 REMARK 3 T13: 0.0393 T23: 0.1189 REMARK 3 L TENSOR REMARK 3 L11: 1.0310 L22: 0.8737 REMARK 3 L33: 0.6736 L12: 0.0055 REMARK 3 L13: 0.2313 L23: -0.1059 REMARK 3 S TENSOR REMARK 3 S11: -0.0580 S12: -0.0682 S13: -0.1211 REMARK 3 S21: 0.0043 S22: -0.0180 S23: -0.0181 REMARK 3 S31: -0.0594 S32: -0.0312 S33: -0.1612 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: REFINEMENT MADE USING REFMAC 5.5.0066. REMARK 3 FOR THE LAST REFINEMENT CYCLES PHENIX WAS USED.
REMARK 4 REMARK 4 3GHP COMPLIES WITH FORMAT V. 3.30, 13-JUL-11
REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 06-MAR-09. REMARK 100 THE RCSB ID CODE IS RCSB051873.
REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 19-JUN-06 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID14-3 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9393 REMARK 200 MONOCHROMATOR : SAGITALLY FOCUSED SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 12802 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.487 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 71.9 REMARK 200 DATA REDUNDANCY : 4.000 REMARK 200 R MERGE (I) : 0.07300 REMARK 200 R SYM (I) : 0.07300 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 20.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.49 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.54 REMARK 200 COMPLETENESS FOR SHELL (%) : 24.4 REMARK 200 DATA REDUNDANCY IN SHELL : 2.40 REMARK 200 R MERGE FOR SHELL (I) : 0.37700 REMARK 200 R SYM FOR SHELL (I) : 0.37700 REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: PDB ENTRY 3FNK REMARK 200 REMARK 200 REMARK: NULL
REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 50.23 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.47 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M 4-(2-HYDROXYETHYL)-1- REMARK 280 PIPERAZINEETHANESULFONIC ACID, 10%(V/V) 2-PROPANOL, 17%(W/V) PEG REMARK 280 4000, PH 7.5, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K
REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 34.37950 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 79.61050 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 34.37950 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 79.61050 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL
REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA.
REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000
REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 VAL A 1 REMARK 465 ILE A 2 REMARK 465 MET A 193 REMARK 465 PRO A 194 REMARK 465 THR A 195 REMARK 465 VAL A 196 REMARK 465 THR A 197 REMARK 465 LEU A 198 REMARK 465 THR A 199 REMARK 465 PRO A 200 REMARK 465 THR A 201 REMARK 465 PRO A 202 REMARK 465 THR A 203 REMARK 465 ALA A 204 REMARK 465 THR A 205 REMARK 465 THR A 206 REMARK 465 THR A 207 REMARK 465 THR A 208 REMARK 465 THR A 209 REMARK 465 ILE A 210 REMARK 465 PRO A 211 REMARK 465 THR A 212 REMARK 465 ALA A 213 REMARK 465 VAL A 214 REMARK 465 PRO A 215 REMARK 465 THR A 216 REMARK 465 THR A 217 REMARK 465 GLU A 218 REMARK 465 SER A 219 REMARK 465 LEU A 220 REMARK 465 GLU A 221 REMARK 465 HIS A 222 REMARK 465 HIS A 223 REMARK 465 HIS A 224 REMARK 465 HIS A 225 REMARK 465 HIS A 226 REMARK 465 HIS A 227 REMARK 465 VAL B 1 REMARK 465 ILE B 2 REMARK 465 ASN B 3 REMARK 465 LEU B 4 REMARK 465 ASP B 5 REMARK 465 PHE B 189 REMARK 465 ALA B 190 REMARK 465 SER B 191 REMARK 465 THR B 192 REMARK 465 MET B 193 REMARK 465 PRO B 194 REMARK 465 THR B 195 REMARK 465 VAL B 196 REMARK 465 THR B 197 REMARK 465 LEU B 198 REMARK 465 THR B 199 REMARK 465 PRO B 200 REMARK 465 THR B 201 REMARK 465 PRO B 202 REMARK 465 THR B 203 REMARK 465 ALA B 204 REMARK 465 THR B 205 REMARK 465 THR B 206 REMARK 465 THR B 207 REMARK 465 THR B 208 REMARK 465 THR B 209 REMARK 465 ILE B 210 REMARK 465 PRO B 211 REMARK 465 THR B 212 REMARK 465 ALA B 213 REMARK 465 VAL B 214 REMARK 465 PRO B 215 REMARK 465 THR B 216 REMARK 465 THR B 217 REMARK 465 GLU B 218 REMARK 465 SER B 219 REMARK 465 LEU B 220 REMARK 465 GLU B 221 REMARK 465 HIS B 222 REMARK 465 HIS B 223 REMARK 465 HIS B 224 REMARK 465 HIS B 225 REMARK 465 HIS B 226 REMARK 465 HIS B 227
REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 ILE A 26 CD1 REMARK 480 LEU A 98 CD2 REMARK 480 VAL A 135 CG1 REMARK 480 ILE A 147 CD1 REMARK 480 ILE B 33 CD1 REMARK 480 ILE B 36 CG1 CG2 CD1 REMARK 480 THR B 37 CG2 REMARK 480 LEU B 53 CD2 REMARK 480 THR B 71 CG2 REMARK 480 ILE B 91 CG2 CD1 REMARK 480 ILE B 95 CD1 REMARK 480 VAL B 127 CG1 REMARK 480 LEU B 128 CD2 REMARK 480 THR B 134 CG2 REMARK 480 ILE B 160 CD1
REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO A 169 C - N - CA ANGL. DEV. = 11.3 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 MET A 6 66.45 -103.10 REMARK 500 SER A 40 6.24 -156.82 REMARK 500 ASN A 66 31.16 -73.18 REMARK 500 THR A 103 -23.16 -140.33 REMARK 500 GLU A 112 24.47 46.01 REMARK 500 LEU A 120 -40.77 -132.05 REMARK 500 THR A 148 74.99 36.37 REMARK 500 TRP A 155 9.12 -63.40 REMARK 500 ASN A 173 -158.79 67.51 REMARK 500 SER A 174 112.41 -4.32 REMARK 500 PRO A 176 -86.05 -41.71 REMARK 500 ILE A 177 -13.94 62.56 REMARK 500 THR A 179 85.78 -150.54 REMARK 500 ALA A 180 -127.64 -100.31 REMARK 500 THR A 181 72.54 -153.12 REMARK 500 ALA A 188 -111.37 -71.60 REMARK 500 PHE A 189 -42.71 -143.41 REMARK 500 ALA A 190 166.99 167.35 REMARK 500 SER A 191 -67.44 -177.85 REMARK 500 LYS B 8 -105.73 -107.54 REMARK 500 ALA B 9 -148.86 86.36 REMARK 500 LYS B 35 68.71 38.92 REMARK 500 SER B 67 -3.65 -154.85 REMARK 500 LEU B 76 7.87 59.61 REMARK 500 GLU B 112 17.21 56.41 REMARK 500 THR B 117 114.96 -163.83 REMARK 500 SER B 162 -155.93 173.48 REMARK 500 PRO B 169 -135.14 -72.43 REMARK 500 SER B 174 127.29 -27.73 REMARK 500 ALA B 175 34.30 76.75 REMARK 500 ILE B 177 -171.19 83.49 REMARK 500 ALA B 178 -159.86 -121.60 REMARK 500 THR B 179 109.38 75.38 REMARK 500 ALA B 180 45.31 -74.26 REMARK 500 THR B 183 19.77 51.13 REMARK 500 THR B 184 94.43 -13.23 REMARK 500 LYS B 185 56.49 -111.23 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 ILE B 167 GLN B 168 -138.08 REMARK 500 SER B 174 ALA B 175 36.88 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CHIRAL CENTERS REMARK 500 REMARK 500 UNEXPECTED CONFIGURATION OF THE FOLLOWING CHIRAL REMARK 500 CENTER(S) USING IMPROPER CA--C--CB--N CHIRALITY REMARK 500 FOR AMINO ACIDS AND C1'--O4'--N1(N9)--C2' FOR REMARK 500 NUCLEIC ACIDS OR EQUIVALENT ANGLE REMARK 500 M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,6X,F5.1,6X,A1,10X,A1,3X,A16) REMARK 500 REMARK 500 M RES CSSEQI IMPROPER EXPECTED FOUND DETAILS REMARK 500 ASN A 66 24.1 L L OUTSIDE RANGE REMARK 500 GLN B 168 20.0 L L OUTSIDE RANGE REMARK 500 REMARK 500 REMARK: NULL
REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 228 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 229 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 232 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 233 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO B 228 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO B 229 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO B 230 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO B 231 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO B 232 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO B 235
REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1QZN RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE ANALYSIS OF A TYPE II COHESIN DOMAIN FROM REMARK 900 THE CELLULOSOME OF ACETIVIBRIO CELLULOLYTICUS REMARK 900 RELATED ID: 1ZV9 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE ANALYSIS OF A TYPE II CRYSTAL STRUCTURE REMARK 900 OF A TYPE II COHESIN MODULE FROM THE CELLULOSOME OF REMARK 900 ACETIVIBRIO CELLULOLYTICUS - SEMET DERIVATIVE REMARK 900 RELATED ID: 3BWZ RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF A TYPE II COHESIN MODULE FROM THE REMARK 900 CELLULOSOME OF ACETIVIBRIO CELLULOLYTICUS REMARK 900 RELATED ID: 1TYJ RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE ANALYSIS OF TYPE II COHESIN A11 FROM REMARK 900 BACTEROIDES CELLULOSOLVENS REMARK 900 RELATED ID: 3FNK RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE SECOND TYPE II COHESIN MODULE FROM REMARK 900 THE CELLULOSOMAL ADAPTOR SCAA SCAFFOLDIN OF ACETIVIBRIO REMARK 900 CELLULOLYTICUS REMARK 900 RELATED ID: 2BM3 RELATED DB: PDB REMARK 900 STRUCTURE OF THE TYPE II COHESIN FROM CLOSTRIDIUM REMARK 900 THERMOCELLUM SDBA
DBREF 3GHP A 1 219 UNP Q7WYN3 Q7WYN3_9FIRM 190 408 DBREF 3GHP B 1 219 UNP Q7WYN3 Q7WYN3_9FIRM 190 408
SEQADV 3GHP LEU A 220 UNP Q7WYN3 EXPRESSION TAG SEQADV 3GHP GLU A 221 UNP Q7WYN3 EXPRESSION TAG SEQADV 3GHP HIS A 222 UNP Q7WYN3 EXPRESSION TAG SEQADV 3GHP HIS A 223 UNP Q7WYN3 EXPRESSION TAG SEQADV 3GHP HIS A 224 UNP Q7WYN3 EXPRESSION TAG SEQADV 3GHP HIS A 225 UNP Q7WYN3 EXPRESSION TAG SEQADV 3GHP HIS A 226 UNP Q7WYN3 EXPRESSION TAG SEQADV 3GHP HIS A 227 UNP Q7WYN3 EXPRESSION TAG SEQADV 3GHP LEU B 220 UNP Q7WYN3 EXPRESSION TAG SEQADV 3GHP GLU B 221 UNP Q7WYN3 EXPRESSION TAG SEQADV 3GHP HIS B 222 UNP Q7WYN3 EXPRESSION TAG SEQADV 3GHP HIS B 223 UNP Q7WYN3 EXPRESSION TAG SEQADV 3GHP HIS B 224 UNP Q7WYN3 EXPRESSION TAG SEQADV 3GHP HIS B 225 UNP Q7WYN3 EXPRESSION TAG SEQADV 3GHP HIS B 226 UNP Q7WYN3 EXPRESSION TAG SEQADV 3GHP HIS B 227 UNP Q7WYN3 EXPRESSION TAG
SEQRES 1 A 227 VAL ILE ASN LEU ASP MET ILE LYS ALA SER TYR ILE THR SEQRES 2 A 227 MET GLY TYR ASP LYS ASN ALA ALA GLU VAL GLY GLU ILE SEQRES 3 A 227 ILE LYS ALA THR VAL LYS ILE ASN LYS ILE THR ASN PHE SEQRES 4 A 227 SER GLY TYR GLN VAL ASN ILE LYS TYR ASP PRO THR VAL SEQRES 5 A 227 LEU GLN ALA VAL ASN PRO LYS THR GLY VAL ALA TYR THR SEQRES 6 A 227 ASN SER SER LEU PRO THR SER GLY GLU LEU LEU VAL SER SEQRES 7 A 227 GLU ASP TYR GLY PRO ILE VAL GLN GLY VAL HIS LYS ILE SEQRES 8 A 227 SER GLU GLY ILE LEU ASN LEU SER ARG SER TYR THR ALA SEQRES 9 A 227 LEU GLU VAL TYR ARG ALA SER GLU SER PRO GLU GLU THR SEQRES 10 A 227 GLY THR LEU ALA VAL VAL GLY PHE LYS VAL LEU GLN LYS SEQRES 11 A 227 LYS ALA THR THR VAL VAL PHE GLU ASP SER GLU THR MET SEQRES 12 A 227 PRO ASN GLY ILE THR GLY THR THR LEU PHE ASN TRP TYR SEQRES 13 A 227 GLY ASN ARG ILE GLN SER GLY TYR PHE VAL ILE GLN PRO SEQRES 14 A 227 GLY GLU ILE ASN SER ALA PRO ILE ALA THR ALA THR PRO SEQRES 15 A 227 THR THR LYS PRO THR ALA PHE ALA SER THR MET PRO THR SEQRES 16 A 227 VAL THR LEU THR PRO THR PRO THR ALA THR THR THR THR SEQRES 17 A 227 THR ILE PRO THR ALA VAL PRO THR THR GLU SER LEU GLU SEQRES 18 A 227 HIS HIS HIS HIS HIS HIS SEQRES 1 B 227 VAL ILE ASN LEU ASP MET ILE LYS ALA SER TYR ILE THR SEQRES 2 B 227 MET GLY TYR ASP LYS ASN ALA ALA GLU VAL GLY GLU ILE SEQRES 3 B 227 ILE LYS ALA THR VAL LYS ILE ASN LYS ILE THR ASN PHE SEQRES 4 B 227 SER GLY TYR GLN VAL ASN ILE LYS TYR ASP PRO THR VAL SEQRES 5 B 227 LEU GLN ALA VAL ASN PRO LYS THR GLY VAL ALA TYR THR SEQRES 6 B 227 ASN SER SER LEU PRO THR SER GLY GLU LEU LEU VAL SER SEQRES 7 B 227 GLU ASP TYR GLY PRO ILE VAL GLN GLY VAL HIS LYS ILE SEQRES 8 B 227 SER GLU GLY ILE LEU ASN LEU SER ARG SER TYR THR ALA SEQRES 9 B 227 LEU GLU VAL TYR ARG ALA SER GLU SER PRO GLU GLU THR SEQRES 10 B 227 GLY THR LEU ALA VAL VAL GLY PHE LYS VAL LEU GLN LYS SEQRES 11 B 227 LYS ALA THR THR VAL VAL PHE GLU ASP SER GLU THR MET SEQRES 12 B 227 PRO ASN GLY ILE THR GLY THR THR LEU PHE ASN TRP TYR SEQRES 13 B 227 GLY ASN ARG ILE GLN SER GLY TYR PHE VAL ILE GLN PRO SEQRES 14 B 227 GLY GLU ILE ASN SER ALA PRO ILE ALA THR ALA THR PRO SEQRES 15 B 227 THR THR LYS PRO THR ALA PHE ALA SER THR MET PRO THR SEQRES 16 B 227 VAL THR LEU THR PRO THR PRO THR ALA THR THR THR THR SEQRES 17 B 227 THR ILE PRO THR ALA VAL PRO THR THR GLU SER LEU GLU SEQRES 18 B 227 HIS HIS HIS HIS HIS HIS
HET EDO A 228 4 HET EDO A 229 4 HET EDO A 230 4 HET EDO A 231 4 HET EDO A 232 4 HET EDO A 233 4 HET EDO B 228 4 HET EDO B 229 4 HET EDO B 230 4 HET EDO B 231 4 HET EDO B 232 4 HET EDO B 233 4 HET EDO B 234 4 HET EDO B 235 4
HETNAM EDO 1,2-ETHANEDIOL
HETSYN EDO ETHYLENE GLYCOL
FORMUL 3 EDO 14(C2 H6 O2) FORMUL 17 HOH *73(H2 O)
HELIX 1 1 SER A 78 GLY A 82 5 5 HELIX 2 2 ILE A 91 GLU A 93 5 3 HELIX 3 3 ALA A 104 SER A 111 1 8 HELIX 4 4 SER B 78 TYR B 81 5 4 HELIX 5 5 LYS B 90 GLU B 93 5 4 HELIX 6 6 ALA B 104 SER B 111 1 8
SHEET 1 A 3 LEU A 53 VAL A 56 0 SHEET 2 A 3 GLY A 118 VAL A 127 -1 O GLY A 124 N VAL A 56 SHEET 3 A 3 THR A 71 SER A 72 -1 N THR A 71 O VAL A 122 SHEET 1 B 5 LEU A 53 VAL A 56 0 SHEET 2 B 5 GLY A 118 VAL A 127 -1 O GLY A 124 N VAL A 56 SHEET 3 B 5 ILE A 26 ASN A 34 -1 N VAL A 31 O LEU A 120 SHEET 4 B 5 TYR A 11 TYR A 16 -1 N GLY A 15 O THR A 30 SHEET 5 B 5 PHE A 165 ILE A 167 1 O ILE A 167 N ILE A 12 SHEET 1 C 4 ILE A 84 LYS A 90 0 SHEET 2 C 4 ILE A 95 SER A 101 -1 O ASN A 97 N VAL A 88 SHEET 3 C 4 PHE A 39 LYS A 47 -1 N ILE A 46 O LEU A 96 SHEET 4 C 4 VAL A 136 PHE A 137 -1 O VAL A 136 N LYS A 47 SHEET 1 D 4 ILE A 84 LYS A 90 0 SHEET 2 D 4 ILE A 95 SER A 101 -1 O ASN A 97 N VAL A 88 SHEET 3 D 4 PHE A 39 LYS A 47 -1 N ILE A 46 O LEU A 96 SHEET 4 D 4 THR A 150 ASN A 154 -1 O THR A 151 N GLN A 43 SHEET 1 E 3 LEU B 53 VAL B 56 0 SHEET 2 E 3 GLY B 118 VAL B 127 -1 O LYS B 126 N GLN B 54 SHEET 3 E 3 THR B 71 SER B 72 -1 N THR B 71 O VAL B 122 SHEET 1 F 5 LEU B 53 VAL B 56 0 SHEET 2 F 5 GLY B 118 VAL B 127 -1 O LYS B 126 N GLN B 54 SHEET 3 F 5 ILE B 26 ASN B 34 -1 N ALA B 29 O VAL B 123 SHEET 4 F 5 TYR B 11 TYR B 16 -1 N GLY B 15 O THR B 30 SHEET 5 F 5 PHE B 165 ILE B 167 1 O ILE B 167 N ILE B 12 SHEET 1 G 4 PRO B 83 GLY B 87 0 SHEET 2 G 4 ILE B 95 TYR B 102 -1 O SER B 99 N GLN B 86 SHEET 3 G 4 PHE B 39 LYS B 47 -1 N SER B 40 O TYR B 102 SHEET 4 G 4 VAL B 136 PHE B 137 -1 O VAL B 136 N LYS B 47 SHEET 1 H 4 PRO B 83 GLY B 87 0 SHEET 2 H 4 ILE B 95 TYR B 102 -1 O SER B 99 N GLN B 86 SHEET 3 H 4 PHE B 39 LYS B 47 -1 N SER B 40 O TYR B 102 SHEET 4 H 4 THR B 150 ASN B 154 -1 O PHE B 153 N SER B 40
CISPEP 1 ALA A 188 PHE A 189 0 -3.80 CISPEP 2 ILE B 7 LYS B 8 0 6.42 CISPEP 3 GLN B 168 PRO B 169 0 -14.60 CISPEP 4 PRO B 169 GLY B 170 0 14.30 CISPEP 5 ILE B 172 ASN B 173 0 -18.39
SITE 1 AC1 4 TYR A 81 SER A 113 GLU A 115 EDO B 230 SITE 1 AC2 2 THR A 179 ALA A 180 SITE 1 AC3 3 THR A 65 SER A 67 EDO B 229 SITE 1 AC4 4 GLU A 138 ASP A 139 THR A 148 HOH A 241 SITE 1 AC5 6 ASN B 57 VAL B 62 ALA B 63 TYR B 64 SITE 2 AC5 6 SER B 68 EDO B 229 SITE 1 AC6 4 EDO A 232 SER B 68 LEU B 69 EDO B 228 SITE 1 AC7 5 EDO A 228 GLY B 15 TYR B 16 LYS B 28 SITE 2 AC7 5 THR B 30 SITE 1 AC8 4 GLN B 43 ASN B 97 SER B 99 THR B 142 SITE 1 AC9 3 PHE B 165 VAL B 166 ILE B 167 SITE 1 BC1 1 HOH B 262
CRYST1 68.759 159.221 44.213 90.00 90.00 90.00 P 21 21 2 8
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 0.014544 0.000000 0.000000 0.00000
SCALE2 0.000000 0.006281 0.000000 0.00000
SCALE3 0.000000 0.000000 0.022618 0.00000