10 20 30 40 50 60 70 80 3FWA - Header ----|----|----|----|----|----|----|----|----|----|----|----|----|----|----|----| Asymmetric UnitHEADER FLAVOPROTEIN 17-JAN-09 3FWA
TITLE STRUCTURE OF BERBERINE BRIDGE ENZYME, C166A VARIANT IN COMPLEX WITH TITLE 2 (S)-RETICULINE
COMPND MOL_ID: 1; COMPND 2 MOLECULE: RETICULINE OXIDASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: BERBERINE BRIDGE-FORMING ENZYME, BBE, COMPND 5 TETRAHYDROPROTOBERBERINE SYNTHASE; COMPND 6 EC: 1.21.3.3; COMPND 7 ENGINEERED: YES
SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHSCHOLZIA CALIFORNICA; SOURCE 3 ORGANISM_COMMON: CALIFORNIA POPPY; SOURCE 4 ORGANISM_TAXID: 3467; SOURCE 5 GENE: BBE1; SOURCE 6 EXPRESSION_SYSTEM: PICHIA PASTORIS; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 4922; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: KM71H; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PPICZA
KEYWDS BI-COVALENT FLAVINYLATION, N-GLYCOSYLATION, ALAKLOID BIOSYNTHESIS, KEYWDS 2 OXIDOREDUCTASE, ALKALOID METABOLISM, CYTOPLASMIC VESICLE, FAD, KEYWDS 3 FLAVOPROTEIN, GLYCOPROTEIN
EXPDTA X-RAY DIFFRACTION
AUTHOR A.WINKLER,P.MACHEROUX,K.GRUBER
REVDAT 2 13-JUL-11 3FWA 1 VERSN REVDAT 1 19-MAY-09 3FWA 0
JRNL AUTH A.WINKLER,K.MOTZ,S.RIEDL,M.PUHL,P.MACHEROUX,K.GRUBER JRNL TITL STRUCTURAL ROLES OF BIOCOVALENT FLANINYLATION IN BERBERINE JRNL TITL 2 BRIDGE ENZYME JRNL REF TO BE PUBLISHED JRNL REFN
REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH A.WINKLER,A.LYSKOWSKI,S.RIEDL,M.PUHL,T.M.KUTCHAN, REMARK 1 AUTH 2 P.MACHEROUX,K.GRUBER REMARK 1 TITL A CONCERTED MECHANISM FOR BERBERINE BRIDGE ENZYME. REMARK 1 REF NAT. CHEM. BIOL. V. 4 739 2008 REMARK 1 REFN ISSN 1552-4450
REMARK 2 REMARK 2 RESOLUTION. 1.50 ANGSTROMS.
REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VICENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE- REMARK 3 : KUNSTLEVE,LI-WEI HUNG,ROBERT IMMORMINO, REMARK 3 : TOM IOERGER,AIRLIE MCCOY,ERIK MCKEE,NIGEL REMARK 3 : MORIARTY,REETAL PAI,RANDY READ,JANE REMARK 3 : RICHARDSON,DAVID RICHARDSON,TOD ROMO,JIM REMARK 3 : SACCHETTINI,NICHOLAS SAUTER,JACOB SMITH, REMARK 3 : LAURENT STORONI,TOM TERWILLIGER,PETER REMARK 3 : ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 41.89 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.990 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.8 REMARK 3 NUMBER OF REFLECTIONS : 95673 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.162 REMARK 3 R VALUE (WORKING SET) : 0.162 REMARK 3 FREE R VALUE : 0.177 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 4780 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 41.9080 - 4.6460 0.99 3377 170 0.1790 0.1860 REMARK 3 2 4.6460 - 3.6880 1.00 3187 193 0.1370 0.1560 REMARK 3 3 3.6880 - 3.2220 1.00 3135 197 0.1480 0.1510 REMARK 3 4 3.2220 - 2.9280 1.00 3146 163 0.1610 0.1650 REMARK 3 5 2.9280 - 2.7180 1.00 3098 158 0.1680 0.1660 REMARK 3 6 2.7180 - 2.5580 1.00 3062 175 0.1650 0.1750 REMARK 3 7 2.5580 - 2.4300 1.00 3103 174 0.1610 0.1780 REMARK 3 8 2.4300 - 2.3240 1.00 3081 156 0.1590 0.1870 REMARK 3 9 2.3240 - 2.2340 1.00 3077 140 0.1550 0.1750 REMARK 3 10 2.2340 - 2.1570 1.00 3082 133 0.1510 0.1730 REMARK 3 11 2.1570 - 2.0900 1.00 3052 159 0.1470 0.1650 REMARK 3 12 2.0900 - 2.0300 1.00 3039 154 0.1520 0.1640 REMARK 3 13 2.0300 - 1.9770 1.00 3071 141 0.1490 0.1660 REMARK 3 14 1.9770 - 1.9290 1.00 3063 145 0.1480 0.1910 REMARK 3 15 1.9290 - 1.8850 1.00 3063 153 0.1560 0.1680 REMARK 3 16 1.8850 - 1.8450 1.00 3030 161 0.1520 0.1720 REMARK 3 17 1.8450 - 1.8080 1.00 2998 164 0.1570 0.1690 REMARK 3 18 1.8080 - 1.7740 1.00 3011 160 0.1580 0.1870 REMARK 3 19 1.7740 - 1.7420 1.00 3046 156 0.1510 0.1650 REMARK 3 20 1.7420 - 1.7120 1.00 3034 149 0.1480 0.1610 REMARK 3 21 1.7120 - 1.6850 1.00 3010 167 0.1540 0.1690 REMARK 3 22 1.6850 - 1.6590 1.00 3029 152 0.1560 0.1820 REMARK 3 23 1.6590 - 1.6340 1.00 2998 162 0.1660 0.1800 REMARK 3 24 1.6340 - 1.6110 0.99 3005 170 0.1590 0.1810 REMARK 3 25 1.6110 - 1.5900 0.99 2982 167 0.1610 0.1720 REMARK 3 26 1.5900 - 1.5690 1.00 2993 158 0.1620 0.1740 REMARK 3 27 1.5690 - 1.5490 1.00 3038 167 0.1770 0.2050 REMARK 3 28 1.5490 - 1.5310 1.00 2969 152 0.1790 0.2370 REMARK 3 29 1.5310 - 1.5130 1.00 3022 168 0.1880 0.2260 REMARK 3 30 1.5130 - 1.4960 0.71 2092 116 0.2180 0.2540 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : 0.37 REMARK 3 B_SOL : 49.89 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.160 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : NULL REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 12.78 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 18.99 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.85400 REMARK 3 B22 (A**2) : -1.85400 REMARK 3 B33 (A**2) : -1.46600 REMARK 3 B12 (A**2) : -0.00000 REMARK 3 B13 (A**2) : -0.00000 REMARK 3 B23 (A**2) : -0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.013 4429 REMARK 3 ANGLE : 1.065 6066 REMARK 3 CHIRALITY : 0.067 662 REMARK 3 PLANARITY : 0.005 758 REMARK 3 DIHEDRAL : 18.276 1628 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 5 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: (CHAIN A AND RESID 26:114) REMARK 3 ORIGIN FOR THE GROUP (A): -18.1065 -2.2840 -33.3374 REMARK 3 T TENSOR REMARK 3 T11: 0.1111 T22: 0.1698 REMARK 3 T33: 0.0898 T12: 0.0085 REMARK 3 T13: 0.0009 T23: -0.0011 REMARK 3 L TENSOR REMARK 3 L11: 0.5989 L22: 0.7830 REMARK 3 L33: 0.2117 L12: 0.0727 REMARK 3 L13: -0.1860 L23: 0.0297 REMARK 3 S TENSOR REMARK 3 S11: -0.0223 S12: 0.1672 S13: -0.0851 REMARK 3 S21: -0.1762 S22: -0.0357 S23: -0.0861 REMARK 3 S31: 0.0255 S32: 0.0450 S33: 0.0436 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: (CHAIN A AND RESID 115:244) REMARK 3 ORIGIN FOR THE GROUP (A): -16.9815 8.1220 -13.9443 REMARK 3 T TENSOR REMARK 3 T11: 0.0516 T22: 0.0705 REMARK 3 T33: 0.0443 T12: -0.0081 REMARK 3 T13: -0.0049 T23: 0.0127 REMARK 3 L TENSOR REMARK 3 L11: 0.4993 L22: 0.4065 REMARK 3 L33: 0.3420 L12: 0.0235 REMARK 3 L13: 0.1304 L23: 0.1832 REMARK 3 S TENSOR REMARK 3 S11: 0.0308 S12: 0.0125 S13: 0.0025 REMARK 3 S21: 0.0281 S22: 0.0262 S23: -0.0255 REMARK 3 S31: -0.0238 S32: 0.0650 S33: -0.0183 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: (CHAIN A AND RESID 245:350) REMARK 3 ORIGIN FOR THE GROUP (A): -27.3201 -7.0388 4.3667 REMARK 3 T TENSOR REMARK 3 T11: 0.0978 T22: 0.0943 REMARK 3 T33: 0.1032 T12: -0.0090 REMARK 3 T13: -0.0121 T23: 0.0096 REMARK 3 L TENSOR REMARK 3 L11: 1.3907 L22: 0.2974 REMARK 3 L33: 0.4754 L12: 0.4252 REMARK 3 L13: 0.0598 L23: -0.3559 REMARK 3 S TENSOR REMARK 3 S11: 0.0404 S12: -0.2118 S13: -0.0281 REMARK 3 S21: 0.0271 S22: -0.0232 S23: 0.0542 REMARK 3 S31: 0.0755 S32: -0.0147 S33: -0.0253 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: (CHAIN A AND RESID 351:456) REMARK 3 ORIGIN FOR THE GROUP (A): -39.3335 -4.1946 -9.8936 REMARK 3 T TENSOR REMARK 3 T11: 0.0740 T22: 0.0987 REMARK 3 T33: 0.0963 T12: -0.0082 REMARK 3 T13: -0.0027 T23: 0.0132 REMARK 3 L TENSOR REMARK 3 L11: 0.6064 L22: 0.3874 REMARK 3 L33: 0.4429 L12: 0.3612 REMARK 3 L13: -0.0027 L23: -0.2847 REMARK 3 S TENSOR REMARK 3 S11: 0.0181 S12: 0.0406 S13: -0.0385 REMARK 3 S21: 0.0079 S22: 0.0646 S23: 0.0261 REMARK 3 S31: 0.0386 S32: -0.0511 S33: -0.0672 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: (CHAIN A AND RESID 457:522) REMARK 3 ORIGIN FOR THE GROUP (A): -36.4565 11.6148 -26.9372 REMARK 3 T TENSOR REMARK 3 T11: 0.0941 T22: 0.1186 REMARK 3 T33: 0.0963 T12: 0.0171 REMARK 3 T13: -0.0050 T23: 0.0347 REMARK 3 L TENSOR REMARK 3 L11: 0.4717 L22: 0.2325 REMARK 3 L33: 0.2844 L12: -0.1282 REMARK 3 L13: 0.2382 L23: 0.0429 REMARK 3 S TENSOR REMARK 3 S11: 0.0228 S12: 0.0780 S13: 0.0411 REMARK 3 S21: -0.0546 S22: -0.0123 S23: 0.0769 REMARK 3 S31: -0.0934 S32: -0.0744 S33: -0.0222 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL
REMARK 4 REMARK 4 3FWA COMPLIES WITH FORMAT V. 3.30, 13-JUL-11
REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 20-JAN-09. REMARK 100 THE RCSB ID CODE IS RCSB051121.
REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-JUL-08 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X06SA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9794 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 225 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 95673 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.496 REMARK 200 RESOLUTION RANGE LOW (A) : 41.900 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.4 REMARK 200 DATA REDUNDANCY : 8.400 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.05300 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 16.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.59 REMARK 200 COMPLETENESS FOR SHELL (%) : 91.5 REMARK 200 DATA REDUNDANCY IN SHELL : 6.60 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.23300 REMARK 200 <I/SIGMA(I)> FOR SHELL : 5.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 3D2J REMARK 200 REMARK 200 REMARK: NULL
REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 53.20 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.63 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M MAGNESIUMCHLORIDE, 30% PEG-4000, REMARK 280 0.1 M TRIS/HCL, PH 8.5, VAPOR DIFFUSION, TEMPERATURE 298K
REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+3/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+3/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 123.23000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 34.43500 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 34.43500 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 61.61500 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 34.43500 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 34.43500 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 184.84500 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 34.43500 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 34.43500 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 61.61500 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 34.43500 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 34.43500 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 184.84500 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 123.23000 REMARK 290 REMARK 290 REMARK: NULL
REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: BIOLOGICAL UNIT IS THE SAME AS ASYMMETRIC UNIT.
REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000
REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A1130 LIES ON A SPECIAL POSITION.
REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 101 -82.08 -107.92 REMARK 500 TYR A 111 18.23 -145.08 REMARK 500 GLU A 287 -122.79 53.39 REMARK 500 PHE A 313 57.98 -148.55 REMARK 500 ASP A 352 -57.33 -148.28 REMARK 500 GLU A 353 18.89 84.94 REMARK 500 PHE A 392 -137.61 -96.82 REMARK 500 ARG A 409 -121.90 -117.95 REMARK 500 HIS A 459 49.36 -102.95 REMARK 500 LEU A 491 -128.44 44.65 REMARK 500 REMARK 500 REMARK: NULL
REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 533 DISTANCE = 5.25 ANGSTROMS REMARK 525 HOH A 536 DISTANCE = 5.17 ANGSTROMS REMARK 525 HOH A 608 DISTANCE = 5.69 ANGSTROMS REMARK 525 HOH A 636 DISTANCE = 5.33 ANGSTROMS REMARK 525 HOH A 637 DISTANCE = 5.07 ANGSTROMS REMARK 525 HOH A 937 DISTANCE = 5.02 ANGSTROMS REMARK 525 HOH A 987 DISTANCE = 5.23 ANGSTROMS REMARK 525 HOH A1075 DISTANCE = 5.23 ANGSTROMS
REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 526 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 45 OD1 REMARK 620 2 HOH A 5 O 106.4 REMARK 620 3 HOH A 573 O 169.4 83.9 REMARK 620 4 HOH A 4 O 83.1 92.2 99.3 REMARK 620 5 HOH A 565 O 85.4 95.9 91.0 167.5 REMARK 620 N 1 2 3 4
REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FAD A 1 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE REN A 2 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NAG A 523 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NAG A 524 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MAN A 3 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NAG A 525 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 526
REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3D3D RELATED DB: PDB REMARK 900 RELATED ID: 3D2H RELATED DB: PDB REMARK 900 RELATED ID: 3D2J RELATED DB: PDB REMARK 900 RELATED ID: 3FW7 RELATED DB: PDB REMARK 900 RELATED ID: 3FW8 RELATED DB: PDB REMARK 900 RELATED ID: 3FW9 RELATED DB: PDB
DBREF 3FWA A 26 522 UNP P30986 RETO_ESCCA 26 522
SEQADV 3FWA ALA A 166 UNP P30986 CYS 166 ENGINEERED
SEQRES 1 A 497 ASP LEU LEU SER CYS LEU THR PHE ASN GLY VAL ARG ASN SEQRES 2 A 497 HIS THR VAL PHE SER ALA ASP SER ASP SER ASP PHE ASN SEQRES 3 A 497 ARG PHE LEU HIS LEU SER ILE GLN ASN PRO LEU PHE GLN SEQRES 4 A 497 ASN SER LEU ILE SER LYS PRO SER ALA ILE ILE LEU PRO SEQRES 5 A 497 GLY SER LYS GLU GLU LEU SER ASN THR ILE ARG CYS ILE SEQRES 6 A 497 ARG LYS GLY SER TRP THR ILE ARG LEU ARG SER GLY GLY SEQRES 7 A 497 HIS SER TYR GLU GLY LEU SER TYR THR SER ASP THR PRO SEQRES 8 A 497 PHE ILE LEU ILE ASP LEU MET ASN LEU ASN ARG VAL SER SEQRES 9 A 497 ILE ASP LEU GLU SER GLU THR ALA TRP VAL GLU SER GLY SEQRES 10 A 497 SER THR LEU GLY GLU LEU TYR TYR ALA ILE THR GLU SER SEQRES 11 A 497 SER SER LYS LEU GLY PHE THR ALA GLY TRP ALA PRO THR SEQRES 12 A 497 VAL GLY THR GLY GLY HIS ILE SER GLY GLY GLY PHE GLY SEQRES 13 A 497 MET MET SER ARG LYS TYR GLY LEU ALA ALA ASP ASN VAL SEQRES 14 A 497 VAL ASP ALA ILE LEU ILE ASP ALA ASN GLY ALA ILE LEU SEQRES 15 A 497 ASP ARG GLN ALA MET GLY GLU ASP VAL PHE TRP ALA ILE SEQRES 16 A 497 ARG GLY GLY GLY GLY GLY VAL TRP GLY ALA ILE TYR ALA SEQRES 17 A 497 TRP LYS ILE LYS LEU LEU PRO VAL PRO GLU LYS VAL THR SEQRES 18 A 497 VAL PHE ARG VAL THR LYS ASN VAL ALA ILE ASP GLU ALA SEQRES 19 A 497 THR SER LEU LEU HIS LYS TRP GLN PHE VAL ALA GLU GLU SEQRES 20 A 497 LEU GLU GLU ASP PHE THR LEU SER VAL LEU GLY GLY ALA SEQRES 21 A 497 ASP GLU LYS GLN VAL TRP LEU THR MET LEU GLY PHE HIS SEQRES 22 A 497 PHE GLY LEU LYS THR VAL ALA LYS SER THR PHE ASP LEU SEQRES 23 A 497 LEU PHE PRO GLU LEU GLY LEU VAL GLU GLU ASP TYR LEU SEQRES 24 A 497 GLU MET SER TRP GLY GLU SER PHE ALA TYR LEU ALA GLY SEQRES 25 A 497 LEU GLU THR VAL SER GLN LEU ASN ASN ARG PHE LEU LYS SEQRES 26 A 497 PHE ASP GLU ARG ALA PHE LYS THR LYS VAL ASP LEU THR SEQRES 27 A 497 LYS GLU PRO LEU PRO SER LYS ALA PHE TYR GLY LEU LEU SEQRES 28 A 497 GLU ARG LEU SER LYS GLU PRO ASN GLY PHE ILE ALA LEU SEQRES 29 A 497 ASN GLY PHE GLY GLY GLN MET SER LYS ILE SER SER ASP SEQRES 30 A 497 PHE THR PRO PHE PRO HIS ARG SER GLY THR ARG LEU MET SEQRES 31 A 497 VAL GLU TYR ILE VAL ALA TRP ASN GLN SER GLU GLN LYS SEQRES 32 A 497 LYS LYS THR GLU PHE LEU ASP TRP LEU GLU LYS VAL TYR SEQRES 33 A 497 GLU PHE MET LYS PRO PHE VAL SER LYS ASN PRO ARG LEU SEQRES 34 A 497 GLY TYR VAL ASN HIS ILE ASP LEU ASP LEU GLY GLY ILE SEQRES 35 A 497 ASP TRP GLY ASN LYS THR VAL VAL ASN ASN ALA ILE GLU SEQRES 36 A 497 ILE SER ARG SER TRP GLY GLU SER TYR PHE LEU SER ASN SEQRES 37 A 497 TYR GLU ARG LEU ILE ARG ALA LYS THR LEU ILE ASP PRO SEQRES 38 A 497 ASN ASN VAL PHE ASN HIS PRO GLN SER ILE PRO PRO MET SEQRES 39 A 497 ALA ASN PHE
MODRES 3FWA ASN A 38 ASN GLYCOSYLATION SITE MODRES 3FWA ASN A 471 ASN GLYCOSYLATION SITE
HET FAD A 1 53 HET REN A 2 48 HET NAG A 523 14 HET NAG A 524 14 HET MAN A 3 11 HET NAG A 525 14 HET MG A 526 1
HETNAM FAD FLAVIN-ADENINE DINUCLEOTIDE HETNAM REN (S)-RETICULINE HETNAM NAG N-ACETYL-D-GLUCOSAMINE HETNAM MAN ALPHA-D-MANNOSE HETNAM MG MAGNESIUM ION
HETSYN REN (1S)-1-(3-HYDROXY-4-METHOXYBENZYL)-6-METHOXY-2-METHYL- HETSYN 2 REN 1,2,3,4-TETRAHYDROISOQUINOLIN-7-OL
FORMUL 2 FAD C27 H33 N9 O15 P2 FORMUL 3 REN C19 H23 N O4 FORMUL 4 NAG 3(C8 H15 N O6) FORMUL 4 MAN C6 H12 O6 FORMUL 6 MG MG 2+ FORMUL 7 HOH *639(H2 O)
HELIX 1 1 ASP A 26 ASN A 34 1 9 HELIX 2 2 SER A 48 SER A 57 1 10 HELIX 3 3 ASN A 60 GLN A 64 5 5 HELIX 4 4 SER A 79 LYS A 92 1 14 HELIX 5 5 THR A 144 SER A 156 1 13 HELIX 6 6 GLY A 170 GLY A 177 1 8 HELIX 7 7 MET A 183 GLY A 188 1 6 HELIX 8 8 LEU A 189 ASP A 192 5 4 HELIX 9 9 ASP A 208 GLY A 213 1 6 HELIX 10 10 GLY A 213 ARG A 221 1 9 HELIX 11 11 ALA A 255 LEU A 273 1 19 HELIX 12 12 LEU A 301 PHE A 313 1 13 HELIX 13 13 PRO A 314 GLY A 317 5 4 HELIX 14 14 VAL A 319 TYR A 323 5 5 HELIX 15 15 SER A 327 ALA A 336 1 10 HELIX 16 16 THR A 340 ASN A 346 5 7 HELIX 17 17 PRO A 368 LYS A 381 1 14 HELIX 18 18 GLY A 393 LYS A 398 5 6 HELIX 19 19 ASN A 423 LYS A 428 5 6 HELIX 20 20 LYS A 429 LYS A 445 1 17 HELIX 21 21 TYR A 456 ILE A 460 5 5 HELIX 22 22 ASP A 461 GLY A 465 5 5 HELIX 23 23 ASN A 471 ASN A 477 1 7 HELIX 24 24 ASN A 477 LEU A 491 1 15 HELIX 25 25 ASN A 493 ASP A 505 1 13
SHEET 1 A 4 HIS A 39 VAL A 41 0 SHEET 2 A 4 ALA A 73 ILE A 75 -1 O ILE A 74 N THR A 40 SHEET 3 A 4 PHE A 117 ASP A 121 1 O LEU A 119 N ILE A 75 SHEET 4 A 4 THR A 96 ARG A 100 1 N ARG A 98 O ILE A 120 SHEET 1 B 5 VAL A 128 ASP A 131 0 SHEET 2 B 5 THR A 136 GLU A 140 -1 O TRP A 138 N SER A 129 SHEET 3 B 5 ALA A 230 LYS A 237 -1 O TRP A 234 N VAL A 139 SHEET 4 B 5 VAL A 194 ILE A 200 -1 N ILE A 198 O TYR A 232 SHEET 5 B 5 ILE A 206 LEU A 207 -1 O LEU A 207 N LEU A 199 SHEET 1 C 2 LEU A 159 GLY A 160 0 SHEET 2 C 2 LEU A 239 PRO A 240 -1 O LEU A 239 N GLY A 160 SHEET 1 D 7 LEU A 324 MET A 326 0 SHEET 2 D 7 VAL A 245 VAL A 254 -1 N VAL A 245 O MET A 326 SHEET 3 D 7 GLN A 289 HIS A 298 -1 O MET A 294 N VAL A 250 SHEET 4 D 7 PHE A 277 ASP A 286 -1 N LEU A 282 O THR A 293 SHEET 5 D 7 GLY A 385 GLY A 391 -1 O LEU A 389 N VAL A 281 SHEET 6 D 7 LEU A 414 TRP A 422 -1 O GLU A 417 N ALA A 388 SHEET 7 D 7 ALA A 355 LEU A 362 -1 N ASP A 361 O VAL A 416
SSBOND 1 CYS A 30 CYS A 89 1555 1555 2.04
LINK ND2 ASN A 38 C1 NAG A 523 1555 1555 1.44 LINK OD1 ASP A 45 MG MG A 526 1555 1555 2.39 LINK ND2 ASN A 471 C1 NAG A 525 1555 1555 1.44 LINK O4 NAG A 523 C1 NAG A 524 1555 1555 1.44 LINK O4 NAG A 524 C1 MAN A 3 1555 1555 1.44 LINK MG MG A 526 O HOH A 5 1555 1555 2.22 LINK MG MG A 526 O HOH A 573 1555 1555 1.96 LINK MG MG A 526 O HOH A 4 1555 1555 1.93 LINK MG MG A 526 O HOH A 565 1555 1555 1.77 LINK ND1 HIS A 104 C8M FAD A 1 1555 1555 1.53
CISPEP 1 ASN A 451 PRO A 452 0 1.25
SITE 1 AC1 36 REN A 2 LEU A 99 ARG A 100 SER A 101 SITE 2 AC1 36 GLY A 102 GLY A 103 HIS A 104 SER A 105 SITE 3 AC1 36 TYR A 106 SER A 110 LEU A 122 SER A 141 SITE 4 AC1 36 GLY A 164 TRP A 165 ALA A 166 VAL A 169 SITE 5 AC1 36 GLY A 170 GLY A 172 GLY A 173 HIS A 174 SITE 6 AC1 36 GLY A 179 PHE A 180 GLY A 225 GLY A 226 SITE 7 AC1 36 GLY A 229 ILE A 231 PHE A 351 TYR A 456 SITE 8 AC1 36 ASN A 458 HOH A 538 HOH A 571 HOH A 603 SITE 9 AC1 36 HOH A 667 HOH A 672 HOH A 675 HOH A 695 SITE 1 AC2 16 FAD A 1 TYR A 106 TRP A 165 MET A 182 SITE 2 AC2 16 LEU A 282 LEU A 335 PHE A 351 ASP A 352 SITE 3 AC2 16 ALA A 388 ASN A 390 GLU A 417 ALA A 421 SITE 4 AC2 16 HOH A 571 HOH A 596 HOH A 597 HOH A 598 SITE 1 AC3 6 ASN A 38 LEU A 76 ASN A 124 NAG A 524 SITE 2 AC3 6 HOH A 627 HOH A1084 SITE 1 AC4 5 MAN A 3 ARG A 52 LEU A 56 NAG A 523 SITE 2 AC4 5 HOH A1099 SITE 1 AC5 1 NAG A 524 SITE 1 AC6 6 PRO A 314 ASN A 471 VAL A 474 HOH A 942 SITE 2 AC6 6 HOH A 996 HOH A1076 SITE 1 AC7 6 HOH A 4 HOH A 5 ASP A 45 ASP A 47 SITE 2 AC7 6 HOH A 565 HOH A 573
CRYST1 68.870 68.870 246.460 90.00 90.00 90.00 P 41 21 2 8
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 0.014520 0.000000 0.000000 0.00000
SCALE2 0.000000 0.014520 0.000000 0.00000
SCALE3 0.000000 0.000000 0.004057 0.00000