10 20 30 40 50 60 70 80 3FL2 - Header ----|----|----|----|----|----|----|----|----|----|----|----|----|----|----|----| Asymmetric UnitHEADER LIGASE 18-DEC-08 3FL2
TITLE CRYSTAL STRUCTURE OF THE RING DOMAIN OF THE E3 UBIQUITIN- TITLE 2 PROTEIN LIGASE UHRF1
COMPND MOL_ID: 1; COMPND 2 MOLECULE: E3 UBIQUITIN-PROTEIN LIGASE UHRF1; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: RING DOMAIN (UNP RESIDUES 672-793); COMPND 5 SYNONYM: UBIQUITIN-LIKE PHD AND RING FINGER DOMAIN- COMPND 6 CONTAINING PROTEIN 1, UBIQUITIN-LIKE-CONTAINING PHD AND COMPND 7 RING FINGER DOMAINS PROTEIN 1, INVERTED CCAAT BOX-BINDING COMPND 8 PROTEIN OF 90 KDA, TRANSCRIPTION FACTOR ICBP90, NUCLEAR COMPND 9 ZINC FINGER PROTEIN NP95, NUCLEAR PROTEIN 95, HUNP95, RING COMPND 10 FINGER PROTEIN 106; COMPND 11 EC: 6.3.2.-; COMPND 12 ENGINEERED: YES
SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: ICBP90, NP95, RNF106, UHRF1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21 (DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET28A-LIC
KEYWDS CELL CYCLE, DNA DAMAGE, DNA REPAIR, RING FINGER DOMAIN, KEYWDS 2 LIGASE, METAL BINDING, DNA REPLICATION, TRANSCRIPTIONAL KEYWDS 3 SILENCING, CHROMATIN, PHOSPHORYLATION, TRANSCRIPTION, KEYWDS 4 TRANSCRIPTION REGULATION, UBL CONJUGATION, UBL CONJUGATION KEYWDS 5 PATHWAY, ZINC, ZINC-FINGER, EPIGENETICS, STRUCTURAL KEYWDS 6 GENOMICS, STRUCTURAL GENOMICS CONSORTIUM, SGC
EXPDTA X-RAY DIFFRACTION
AUTHOR J.R.WALKER,G.V.AVVAKUMOV,S.XUE,Y.LI,C.BOUNTRA,J.WEIGELT, AUTHOR 2 C.H.ARROWSMITH,A.M.EDWARDS,A.BOCHKAREV,S.DHE-PAGANON, AUTHOR 3 STRUCTURAL GENOMICS CONSORTIUM (SGC)
REVDAT 1 20-JAN-09 3FL2 0
JRNL AUTH J.R.WALKER,G.V.AVVAKUMOV,S.XUE,Y.LI,C.BOUNTRA, JRNL AUTH 2 J.WEIGELT,C.H.ARROWSMITH,A.M.EDWARDS,A.BOCHKAREV, JRNL AUTH 3 S.DHE-PAGANON JRNL TITL STRUCTURE OF THE RING DOMAIN OF THE E3 JRNL TITL 2 UBIQUITIN-PROTEIN LIGASE UHRF1 JRNL REF TO BE PUBLISHED JRNL REFN
REMARK 1
REMARK 2 REMARK 2 RESOLUTION. 1.75 ANGSTROMS.
REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0063 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.75 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 30.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 10426 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.187 REMARK 3 R VALUE (WORKING SET) : 0.183 REMARK 3 FREE R VALUE : 0.250 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.800 REMARK 3 FREE R VALUE TEST SET COUNT : 525 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.75 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.79 REMARK 3 REFLECTION IN BIN (WORKING SET) : 754 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.87 REMARK 3 BIN R VALUE (WORKING SET) : 0.1930 REMARK 3 BIN FREE R VALUE SET COUNT : 30 REMARK 3 BIN FREE R VALUE : 0.2020 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 907 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 2 REMARK 3 SOLVENT ATOMS : 100 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 15.85 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.94000 REMARK 3 B22 (A**2) : 0.37000 REMARK 3 B33 (A**2) : 1.56000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.130 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.138 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.081 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 4.655 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.961 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.925 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 932 ; 0.015 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 1250 ; 1.500 ; 1.958 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 114 ; 5.859 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 44 ;37.206 ;24.091 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 155 ;11.981 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 7 ;11.983 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 139 ; 0.098 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 708 ; 0.008 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 580 ; 1.727 ; 3.000 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 935 ; 2.419 ; 4.000 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 352 ; 3.951 ; 5.000 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 315 ; 5.665 ; 7.000 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 13 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 675 A 680 REMARK 3 ORIGIN FOR THE GROUP (A): 15.9815 15.2735 2.6265 REMARK 3 T TENSOR REMARK 3 T11: 0.2150 T22: 0.3401 REMARK 3 T33: 0.2441 T12: -0.0244 REMARK 3 T13: 0.0119 T23: -0.0850 REMARK 3 L TENSOR REMARK 3 L11: 0.2736 L22: 10.9231 REMARK 3 L33: 20.7779 L12: 1.0348 REMARK 3 L13: -0.5350 L23: -0.8833 REMARK 3 S TENSOR REMARK 3 S11: -0.0945 S12: 0.1958 S13: -0.1522 REMARK 3 S21: -0.2294 S22: -0.0592 S23: -0.1880 REMARK 3 S31: 0.2276 S32: 0.3448 S33: 0.1536 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 681 A 693 REMARK 3 ORIGIN FOR THE GROUP (A): 18.6760 21.7238 12.9025 REMARK 3 T TENSOR REMARK 3 T11: 0.1390 T22: 0.0978 REMARK 3 T33: 0.1584 T12: -0.0014 REMARK 3 T13: 0.0004 T23: 0.0560 REMARK 3 L TENSOR REMARK 3 L11: 5.2810 L22: 4.4344 REMARK 3 L33: 9.0049 L12: 0.5563 REMARK 3 L13: 1.6003 L23: -0.1472 REMARK 3 S TENSOR REMARK 3 S11: -0.1344 S12: 0.4740 S13: 0.1745 REMARK 3 S21: -0.1597 S22: -0.0413 S23: 0.2118 REMARK 3 S31: -0.3526 S32: 0.3543 S33: 0.1757 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 694 A 711 REMARK 3 ORIGIN FOR THE GROUP (A): 26.0875 11.4813 5.8139 REMARK 3 T TENSOR REMARK 3 T11: 0.2630 T22: 0.2641 REMARK 3 T33: 0.2518 T12: 0.0194 REMARK 3 T13: 0.0216 T23: 0.0271 REMARK 3 L TENSOR REMARK 3 L11: 0.2923 L22: 5.0884 REMARK 3 L33: 2.6207 L12: -0.5320 REMARK 3 L13: -0.6331 L23: 3.4181 REMARK 3 S TENSOR REMARK 3 S11: 0.0267 S12: -0.1010 S13: 0.0067 REMARK 3 S21: -0.2982 S22: 0.2274 S23: -0.4159 REMARK 3 S31: -0.1849 S32: 0.2218 S33: -0.2541 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 712 A 725 REMARK 3 ORIGIN FOR THE GROUP (A): 23.4847 8.2038 14.2880 REMARK 3 T TENSOR REMARK 3 T11: 0.1461 T22: 0.1392 REMARK 3 T33: 0.1774 T12: 0.0430 REMARK 3 T13: 0.0326 T23: 0.0007 REMARK 3 L TENSOR REMARK 3 L11: 0.6879 L22: 1.3327 REMARK 3 L33: 8.8535 L12: -0.4589 REMARK 3 L13: -0.2636 L23: 1.4153 REMARK 3 S TENSOR REMARK 3 S11: 0.0704 S12: 0.0955 S13: -0.0070 REMARK 3 S21: -0.1283 S22: -0.1333 S23: -0.1887 REMARK 3 S31: 0.3080 S32: 0.1755 S33: 0.0629 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 726 A 731 REMARK 3 ORIGIN FOR THE GROUP (A): 19.8315 5.2700 24.1930 REMARK 3 T TENSOR REMARK 3 T11: 0.1304 T22: 0.1375 REMARK 3 T33: 0.1726 T12: -0.0091 REMARK 3 T13: 0.0194 T23: -0.0017 REMARK 3 L TENSOR REMARK 3 L11: 6.0461 L22: 7.1059 REMARK 3 L33: 20.4486 L12: -1.4442 REMARK 3 L13: 7.6894 L23: -3.4873 REMARK 3 S TENSOR REMARK 3 S11: 0.2852 S12: -0.0104 S13: -0.5213 REMARK 3 S21: -0.0176 S22: -0.1334 S23: -0.2532 REMARK 3 S31: 0.9210 S32: 0.4155 S33: -0.1518 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 732 A 740 REMARK 3 ORIGIN FOR THE GROUP (A): 17.4802 16.8317 25.3834 REMARK 3 T TENSOR REMARK 3 T11: 0.1105 T22: 0.0578 REMARK 3 T33: 0.0899 T12: 0.0172 REMARK 3 T13: 0.0338 T23: -0.0155 REMARK 3 L TENSOR REMARK 3 L11: 8.3805 L22: 4.9709 REMARK 3 L33: 1.5620 L12: 4.1290 REMARK 3 L13: 3.2821 L23: 2.1504 REMARK 3 S TENSOR REMARK 3 S11: 0.0355 S12: -0.1753 S13: 0.2693 REMARK 3 S21: 0.0702 S22: -0.0822 S23: 0.1596 REMARK 3 S31: -0.0055 S32: -0.1398 S33: 0.0467 REMARK 3 REMARK 3 TLS GROUP : 7 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 741 A 745 REMARK 3 ORIGIN FOR THE GROUP (A): 18.9575 14.2293 26.7629 REMARK 3 T TENSOR REMARK 3 T11: 0.1106 T22: 0.1032 REMARK 3 T33: 0.1100 T12: 0.0102 REMARK 3 T13: 0.0050 T23: -0.0067 REMARK 3 L TENSOR REMARK 3 L11: 7.9780 L22: 4.0860 REMARK 3 L33: 1.2527 L12: 3.6333 REMARK 3 L13: -0.2954 L23: -0.7881 REMARK 3 S TENSOR REMARK 3 S11: -0.0435 S12: -0.3345 S13: 0.1489 REMARK 3 S21: 0.0923 S22: -0.0205 S23: -0.0724 REMARK 3 S31: 0.0558 S32: -0.0830 S33: 0.0640 REMARK 3 REMARK 3 TLS GROUP : 8 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 746 A 751 REMARK 3 ORIGIN FOR THE GROUP (A): 14.9907 10.2448 33.8324 REMARK 3 T TENSOR REMARK 3 T11: 0.1394 T22: 0.1446 REMARK 3 T33: 0.1456 T12: 0.0047 REMARK 3 T13: 0.0148 T23: 0.0073 REMARK 3 L TENSOR REMARK 3 L11: 9.9313 L22: 4.7459 REMARK 3 L33: 16.3730 L12: -0.6046 REMARK 3 L13: 2.8428 L23: 1.7204 REMARK 3 S TENSOR REMARK 3 S11: 0.0799 S12: -0.3412 S13: -0.2355 REMARK 3 S21: 0.2934 S22: -0.1060 S23: 0.3882 REMARK 3 S31: 0.3993 S32: -0.6512 S33: 0.0261 REMARK 3 REMARK 3 TLS GROUP : 9 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 752 A 757 REMARK 3 ORIGIN FOR THE GROUP (A): 17.4188 13.6469 40.5327 REMARK 3 T TENSOR REMARK 3 T11: 0.1855 T22: 0.2267 REMARK 3 T33: 0.1345 T12: -0.0178 REMARK 3 T13: 0.0159 T23: -0.0267 REMARK 3 L TENSOR REMARK 3 L11: 5.0618 L22: 9.3367 REMARK 3 L33: 11.9961 L12: -0.5487 REMARK 3 L13: -4.0219 L23: -5.0798 REMARK 3 S TENSOR REMARK 3 S11: 0.0018 S12: -0.2175 S13: -0.2011 REMARK 3 S21: -0.0124 S22: -0.0507 S23: 0.4297 REMARK 3 S31: 0.3891 S32: -0.4409 S33: 0.0490 REMARK 3 REMARK 3 TLS GROUP : 10 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 758 A 767 REMARK 3 ORIGIN FOR THE GROUP (A): 25.3781 17.6341 34.3644 REMARK 3 T TENSOR REMARK 3 T11: 0.1278 T22: 0.1250 REMARK 3 T33: 0.1317 T12: -0.0089 REMARK 3 T13: 0.0173 T23: -0.0379 REMARK 3 L TENSOR REMARK 3 L11: 7.7393 L22: 4.1404 REMARK 3 L33: 3.8305 L12: -3.0225 REMARK 3 L13: -1.7065 L23: -0.5675 REMARK 3 S TENSOR REMARK 3 S11: 0.0484 S12: -0.4435 S13: 0.2658 REMARK 3 S21: 0.2667 S22: 0.0787 S23: -0.0038 REMARK 3 S31: -0.1884 S32: -0.0217 S33: -0.1271 REMARK 3 REMARK 3 TLS GROUP : 11 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 768 A 773 REMARK 3 ORIGIN FOR THE GROUP (A): 14.7845 21.4042 34.5975 REMARK 3 T TENSOR REMARK 3 T11: 0.1758 T22: 0.2042 REMARK 3 T33: 0.2083 T12: -0.0113 REMARK 3 T13: 0.0244 T23: 0.0019 REMARK 3 L TENSOR REMARK 3 L11: 1.9233 L22: 6.5947 REMARK 3 L33: 14.8664 L12: -0.0140 REMARK 3 L13: -2.3100 L23: 2.5416 REMARK 3 S TENSOR REMARK 3 S11: 0.0206 S12: -0.2141 S13: -0.1944 REMARK 3 S21: 0.0340 S22: -0.0750 S23: 0.1266 REMARK 3 S31: 0.3534 S32: -0.4345 S33: 0.0544 REMARK 3 REMARK 3 TLS GROUP : 12 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 774 A 781 REMARK 3 ORIGIN FOR THE GROUP (A): 12.1475 16.5782 17.9303 REMARK 3 T TENSOR REMARK 3 T11: 0.0906 T22: 0.1042 REMARK 3 T33: 0.1352 T12: 0.0240 REMARK 3 T13: 0.0208 T23: 0.0139 REMARK 3 L TENSOR REMARK 3 L11: 2.2945 L22: 5.8722 REMARK 3 L33: 9.8270 L12: 0.5351 REMARK 3 L13: 2.6180 L23: 1.2095 REMARK 3 S TENSOR REMARK 3 S11: -0.0291 S12: -0.0030 S13: 0.1285 REMARK 3 S21: 0.0664 S22: -0.0039 S23: 0.2241 REMARK 3 S31: -0.2154 S32: -0.3515 S33: 0.0329 REMARK 3 REMARK 3 TLS GROUP : 13 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 782 A 793 REMARK 3 ORIGIN FOR THE GROUP (A): 11.5590 6.5216 15.9121 REMARK 3 T TENSOR REMARK 3 T11: 0.1157 T22: 0.0810 REMARK 3 T33: 0.1214 T12: 0.0134 REMARK 3 T13: -0.0014 T23: -0.0327 REMARK 3 L TENSOR REMARK 3 L11: 7.1164 L22: 2.2881 REMARK 3 L33: 2.4719 L12: 1.0416 REMARK 3 L13: -2.0197 L23: 0.3536 REMARK 3 S TENSOR REMARK 3 S11: 0.0034 S12: 0.2760 S13: -0.2324 REMARK 3 S21: -0.1665 S22: -0.0725 S23: -0.0948 REMARK 3 S31: 0.1458 S32: 0.0361 S33: 0.0690 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE REMARK 3 RIDING POSITIONS. ATOM RECORD CONTAINS SUM OF TLS AND RESIDUAL REMARK 3 B FACTORS, ANISOU RECORD CONTAINS SUM OF TLS AND RESIDUAL U REMARK 3 FACTORS.
REMARK 4 REMARK 4 3FL2 COMPLIES WITH FORMAT V. 3.20, 01-DEC-08
REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 19-DEC-08. REMARK 100 THE RCSB ID CODE IS RCSB050721.
REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 11-DEC-08 REMARK 200 TEMPERATURE (KELVIN) : 100.0 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU FR-E SUPERBRIGHT REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.54178 REMARK 200 MONOCHROMATOR : GRAPHITE REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : AREA DETECTOR REMARK 200 DETECTOR MANUFACTURER : RIGAKU RAXIS IV REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 11019 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.750 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 5.200 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.04000 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 43.7800 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.75 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.81 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.9 REMARK 200 DATA REDUNDANCY IN SHELL : 5.20 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.17800 REMARK 200 <I/SIGMA(I)> FOR SHELL : 10.761 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 1Z6U REMARK 200 REMARK 200 REMARK: NULL
REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 34.40 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.88 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 27% PEG MME 2000, 0.1 M TRIS-HCL, REMARK 280 PH 8.5, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K
REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 22.86800 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 24.20450 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 23.45800 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 24.20450 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 22.86800 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 23.45800 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL
REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA.
REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000
REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 670 REMARK 465 SER A 671 REMARK 465 GLU A 672 REMARK 465 PRO A 673 REMARK 465 TYR A 674 REMARK 465 LEU A 701 REMARK 465 LYS A 702 REMARK 465 ASP A 703
REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS(M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 704 CG CD NE CZ NH1 NH2 REMARK 470 GLN A 773 CD OE1 NE2
REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A1001 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 724 SG REMARK 620 2 CYS A 727 SG 110.7 REMARK 620 3 CYS A 744 SG 102.9 105.7 REMARK 620 4 CYS A 747 SG 114.0 109.0 114.2 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A1002 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 739 SG REMARK 620 2 HIS A 741 ND1 120.5 REMARK 620 3 CYS A 759 SG 103.0 111.6 REMARK 620 4 CYS A 762 SG 103.0 104.5 114.3 REMARK 620 N 1 2 3
REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A1001 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A1002
REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3BI7 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE SRA DOMAIN OF E3 UBIQUITIN-PROTEIN REMARK 900 LIGASE UHRF1 REMARK 900 RELATED ID: 3CLZ RELATED DB: PDB REMARK 900 THE SET AND RING ASSOCIATED (SRA) DOMAIN OF UHRF1 BOUND TO REMARK 900 METHYLATED DNA REMARK 900 RELATED ID: 2FAZ RELATED DB: PDB REMARK 900 UBIQUITIN-LIKE DOMAIN OF HUMAN NUCLEAR ZINC FINGER PROTEIN REMARK 900 NP95 REMARK 900 RELATED ID: 3DB4 RELATED DB: PDB REMARK 900 STRUCTURE OF THE TANDEM TUDOR DOMAINS OF THE E3 UBIQUITIN- REMARK 900 PROTEIN LIGASE UHRF1 REMARK 900 RELATED ID: 3DB3 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE TANDEM TUDOR DOMAINS OF THE E3 REMARK 900 UBIQUITIN-PROTEIN LIGASE UHRF1 IN COMPLEX WITH REMARK 900 TRIMETHYLATED HISTONE H3-K9 PEPTIDE
DBREF 3FL2 A 672 793 UNP Q96T88 UHRF1_HUMAN 672 793
SEQADV 3FL2 GLY A 670 UNP Q96T88 EXPRESSION TAG SEQADV 3FL2 SER A 671 UNP Q96T88 EXPRESSION TAG
SEQRES 1 A 124 GLY SER GLU PRO TYR SER LEU THR ALA GLN GLN SER SER SEQRES 2 A 124 LEU ILE ARG GLU ASP LYS SER ASN ALA LYS LEU TRP ASN SEQRES 3 A 124 GLU VAL LEU ALA SER LEU LYS ASP ARG PRO ALA SER GLY SEQRES 4 A 124 SER PRO PHE GLN LEU PHE LEU SER LYS VAL GLU GLU THR SEQRES 5 A 124 PHE GLN CYS ILE CYS CYS GLN GLU LEU VAL PHE ARG PRO SEQRES 6 A 124 ILE THR THR VAL CYS GLN HIS ASN VAL CYS LYS ASP CYS SEQRES 7 A 124 LEU ASP ARG SER PHE ARG ALA GLN VAL PHE SER CYS PRO SEQRES 8 A 124 ALA CYS ARG TYR ASP LEU GLY ARG SER TYR ALA MET GLN SEQRES 9 A 124 VAL ASN GLN PRO LEU GLN THR VAL LEU ASN GLN LEU PHE SEQRES 10 A 124 PRO GLY TYR GLY ASN GLY ARG
HET ZN A1001 1 HET ZN A1002 1
HETNAM ZN ZINC ION
FORMUL 2 ZN 2(ZN 2+) FORMUL 4 HOH *96(H2 O)
HELIX 1 1 THR A 677 ASP A 687 1 11 HELIX 2 2 ASN A 690 SER A 700 1 11 HELIX 3 3 SER A 709 PHE A 722 1 14 HELIX 4 4 LYS A 745 ALA A 754 1 10 HELIX 5 5 ASN A 775 PHE A 786 1 12
SHEET 1 A 2 PRO A 734 THR A 736 0 SHEET 2 A 2 ASN A 742 CYS A 744 -1 O VAL A 743 N ILE A 735
LINK SG CYS A 724 ZN ZN A1001 1555 1555 2.40 LINK SG CYS A 727 ZN ZN A1001 1555 1555 2.35 LINK SG CYS A 739 ZN ZN A1002 1555 1555 2.34 LINK ND1 HIS A 741 ZN ZN A1002 1555 1555 2.11 LINK SG CYS A 744 ZN ZN A1001 1555 1555 2.39 LINK SG CYS A 747 ZN ZN A1001 1555 1555 2.37 LINK SG CYS A 759 ZN ZN A1002 1555 1555 2.35 LINK SG CYS A 762 ZN ZN A1002 1555 1555 2.35
SITE 1 AC1 4 CYS A 724 CYS A 727 CYS A 744 CYS A 747 SITE 1 AC2 4 CYS A 739 HIS A 741 CYS A 759 CYS A 762
CRYST1 45.736 46.916 48.409 90.00 90.00 90.00 P 21 21 21 4
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 0.021865 0.000000 0.000000 0.00000
SCALE2 0.000000 0.021315 0.000000 0.00000
SCALE3 0.000000 0.000000 0.020657 0.00000