10 20 30 40 50 60 70 80 3FF8 - Header ----|----|----|----|----|----|----|----|----|----|----|----|----|----|----|----| Asymmetric UnitHEADER CELL ADHESION/IMMUNE SYSTEM 02-DEC-08 3FF8
TITLE STRUCTURE OF NK CELL RECEPTOR KLRG1 BOUND TO E-CADHERIN
COMPND MOL_ID: 1; COMPND 2 MOLECULE: EPITHELIAL CADHERIN; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: UNP RESIDUES 155-254, CADHERIN 1 DOMAIN; COMPND 5 SYNONYM: E-CADHERIN, CADHERIN-1, UVOMORULIN, CAM 120/80, E- COMPND 6 CAD/CTF1, E-CAD/CTF2, E-CAD/CTF3; COMPND 7 ENGINEERED: YES; COMPND 8 MUTATION: YES; COMPND 9 MOL_ID: 2; COMPND 10 MOLECULE: KILLER CELL LECTIN-LIKE RECEPTOR SUBFAMILY G COMPND 11 MEMBER 1; COMPND 12 CHAIN: C, D; COMPND 13 FRAGMENT: UNP RESIDUES 75-188, C-TYPE LECTIN DOMAIN; COMPND 14 SYNONYM: MAST CELL FUNCTION-ASSOCIATED ANTIGEN 2F1, MAST COMPND 15 CELL FUNCTION-ASSOCIATED ANTIGEN; COMPND 16 ENGINEERED: YES
SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: CDH1, CDHE, UVO; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 MOL_ID: 2; SOURCE 8 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 9 ORGANISM_COMMON: MOUSE; SOURCE 10 ORGANISM_TAXID: 10090; SOURCE 11 GENE: KLRG1, MAFA; SOURCE 12 EXPRESSION_SYSTEM: ESCHERICHIA COLI
KEYWDS KLRG1-CADHERIN COMPLEX, CALCIUM, CELL ADHESION, CELL KEYWDS 2 JUNCTION, CELL MEMBRANE, CLEAVAGE ON PAIR OF BASIC KEYWDS 3 RESIDUES, DISEASE MUTATION, GLYCOPROTEIN, MEMBRANE, KEYWDS 4 PHOSPHOPROTEIN, POLYMORPHISM, TRANSMEMBRANE, LECTIN, KEYWDS 5 RECEPTOR, SIGNAL-ANCHOR, CELL ADHESION/IMMUNE SYSTEM KEYWDS 6 COMPLEX
EXPDTA X-RAY DIFFRACTION
AUTHOR Y.LI,R.A.MARIUZZA
REVDAT 1 28-JUL-09 3FF8 0
JRNL AUTH Y.LI,M.HOFMANN,Q.WANG,L.TENG,L.K.CHLEWICKI, JRNL AUTH 2 H.PIRCHER,R.A.MARIUZZA JRNL TITL STRUCTURE OF NATURAL KILLER CELL RECEPTOR KLRG1 JRNL TITL 2 BOUND TO E-CADHERIN REVEALS BASIS FOR JRNL TITL 3 MHC-INDEPENDENT MISSING SELF RECOGNITION. JRNL REF IMMUNITY V. 31 35 2009 JRNL REFN ISSN 1074-7613 JRNL PMID 19604491 JRNL DOI 10.1016/J.IMMUNI.2009.04.019
REMARK 1
REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS.
REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES, PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 30.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 36132 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : NULL REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING SET) : 0.212 REMARK 3 FREE R VALUE : 0.253 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1795 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : NULL REMARK 3 BIN RESOLUTION RANGE LOW (A) : NULL REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : NULL REMARK 3 BIN FREE R VALUE : NULL REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3383 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 3 REMARK 3 SOLVENT ATOMS : 249 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 32.24 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.79700 REMARK 3 B22 (A**2) : 1.40000 REMARK 3 B33 (A**2) : -0.60300 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.011 REMARK 3 BOND ANGLES (DEGREES) : NULL REMARK 3 DIHEDRAL ANGLES (DEGREES) : NULL REMARK 3 IMPROPER ANGLES (DEGREES) : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : NULL REMARK 3 KSOL : NULL REMARK 3 BSOL : 59.19 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : CNS_TOPPAR:PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : CNS_TOPPAR:WATER.PARAM REMARK 3 PARAMETER FILE 3 : CNS_TOPPAR:ION.PARAM REMARK 3 PARAMETER FILE 4 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 TOPOLOGY FILE 2 : NULL REMARK 3 TOPOLOGY FILE 3 : NULL REMARK 3 TOPOLOGY FILE 4 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL
REMARK 4 REMARK 4 3FF8 COMPLIES WITH FORMAT V. 3.20, 01-DEC-08
REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 05-DEC-08. REMARK 100 THE RCSB ID CODE IS RCSB050516.
REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 07-JUL-08 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS REMARK 200 BEAMLINE : X29A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : NULL REMARK 200 WAVELENGTH OR RANGE (A) : 1.502 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : HKL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 36191 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 14.400 REMARK 200 R MERGE (I) : 0.07200 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 46.4110 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.07 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 14.20 REMARK 200 R MERGE FOR SHELL (I) : 0.48400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRIES 3FF9 AND 2O72 REMARK 200 REMARK 200 REMARK: NULL
REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 54.18 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.68 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG8000, PH 6.5, VAPOR DIFFUSION, REMARK 280 TEMPERATURE 298K
REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 26.88800 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 53.79650 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 45.26300 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 53.79650 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 26.88800 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 45.26300 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL
REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: BIOLOGICAL UNIT IS THE SAME AS ASYM.
REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4540 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 20240 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -58.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000
REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ASP B 100 REMARK 465 VAL C 187 REMARK 465 LEU C 188 REMARK 465 TYR C 189 REMARK 465 TYR D 189
REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS(M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LEU D 188 CG CD1 CD2
REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 GLU A 64 OE1
REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O LEU D 126 O HOH D 152 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG D 142 NE - CZ - NH1 ANGL. DEV. = -3.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 21 -79.22 -106.64 REMARK 500 ALA A 43 -83.47 -115.06 REMARK 500 PRO A 46 130.19 -36.00 REMARK 500 LEU B 21 -76.47 -107.77 REMARK 500 ASP B 29 2.75 -69.20 REMARK 500 ALA B 43 -87.54 -105.21 REMARK 500 PRO B 46 127.59 -39.87 REMARK 500 LEU C 78 -13.42 85.93 REMARK 500 PRO D 76 161.99 -49.98 REMARK 500 LEU D 78 -8.12 91.48 REMARK 500 ASP D 139 50.08 -154.10 REMARK 500 REMARK 500 REMARK: NULL
REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 102 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 11 OE1 REMARK 620 2 GLU A 69 OE2 93.2 REMARK 620 3 ASP A 100 OD1 83.1 143.3 REMARK 620 4 ASP A 100 OD2 102.9 91.8 54.2 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 101 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 11 OE2 REMARK 620 2 ASP A 67 OD1 90.0 REMARK 620 3 GLU A 69 OE2 76.0 111.0 REMARK 620 4 HOH A 246 O 162.9 73.3 112.8 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B 101 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU B 11 OE1 REMARK 620 2 ASP B 67 OD2 83.0 REMARK 620 3 GLU B 69 OE1 83.2 77.2 REMARK 620 N 1 2
REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 101 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 102 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA B 101
REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3FF7 RELATED DB: PDB REMARK 900 RELATED ID: 3FF9 RELATED DB: PDB
DBREF 3FF8 A 1 100 UNP P12830 CADH1_HUMAN 155 254 DBREF 3FF8 B 1 100 UNP P12830 CADH1_HUMAN 155 254 DBREF 3FF8 C 75 189 UNP O88713 KLRG1_MOUSE 75 188 DBREF 3FF8 D 75 189 UNP O88713 KLRG1_MOUSE 75 188
SEQADV 3FF8 MET A 0 UNP P12830 EXPRESSION TAG SEQADV 3FF8 LEU A 9 UNP P12830 CYS 163 ENGINEERED SEQADV 3FF8 MET B 0 UNP P12830 EXPRESSION TAG SEQADV 3FF8 LEU B 9 UNP P12830 CYS 163 ENGINEERED
SEQRES 1 A 101 MET ASP TRP VAL ILE PRO PRO ILE SER LEU PRO GLU ASN SEQRES 2 A 101 GLU LYS GLY PRO PHE PRO LYS ASN LEU VAL GLN ILE LYS SEQRES 3 A 101 SER ASN LYS ASP LYS GLU GLY LYS VAL PHE TYR SER ILE SEQRES 4 A 101 THR GLY GLN GLY ALA ASP THR PRO PRO VAL GLY VAL PHE SEQRES 5 A 101 ILE ILE GLU ARG GLU THR GLY TRP LEU LYS VAL THR GLU SEQRES 6 A 101 PRO LEU ASP ARG GLU ARG ILE ALA THR TYR THR LEU PHE SEQRES 7 A 101 SER HIS ALA VAL SER SER ASN GLY ASN ALA VAL GLU ASP SEQRES 8 A 101 PRO MET GLU ILE LEU ILE THR VAL THR ASP SEQRES 1 B 101 MET ASP TRP VAL ILE PRO PRO ILE SER LEU PRO GLU ASN SEQRES 2 B 101 GLU LYS GLY PRO PHE PRO LYS ASN LEU VAL GLN ILE LYS SEQRES 3 B 101 SER ASN LYS ASP LYS GLU GLY LYS VAL PHE TYR SER ILE SEQRES 4 B 101 THR GLY GLN GLY ALA ASP THR PRO PRO VAL GLY VAL PHE SEQRES 5 B 101 ILE ILE GLU ARG GLU THR GLY TRP LEU LYS VAL THR GLU SEQRES 6 B 101 PRO LEU ASP ARG GLU ARG ILE ALA THR TYR THR LEU PHE SEQRES 7 B 101 SER HIS ALA VAL SER SER ASN GLY ASN ALA VAL GLU ASP SEQRES 8 B 101 PRO MET GLU ILE LEU ILE THR VAL THR ASP SEQRES 1 C 114 CYS PRO ILE LEU TRP THR ARG ASN GLY SER HIS CYS TYR SEQRES 2 C 114 TYR PHE SER MET GLU LYS LYS ASP TRP ASN SER SER LEU SEQRES 3 C 114 LYS PHE CYS ALA ASP LYS GLY SER HIS LEU LEU THR PHE SEQRES 4 C 114 PRO ASP ASN GLN GLY VAL LYS LEU PHE GLY GLU TYR LEU SEQRES 5 C 114 GLY GLN ASP PHE TYR TRP ILE GLY LEU ARG ASN ILE ASP SEQRES 6 C 114 GLY TRP ARG TRP GLU GLY GLY PRO ALA LEU SER LEU ARG SEQRES 7 C 114 ILE LEU THR ASN SER LEU ILE GLN ARG CYS GLY ALA ILE SEQRES 8 C 114 HIS ARG ASN GLY LEU GLN ALA SER SER CYS GLU VAL ALA SEQRES 9 C 114 LEU GLN TRP ILE CYS LYS LYS VAL LEU TYR SEQRES 1 D 114 CYS PRO ILE LEU TRP THR ARG ASN GLY SER HIS CYS TYR SEQRES 2 D 114 TYR PHE SER MET GLU LYS LYS ASP TRP ASN SER SER LEU SEQRES 3 D 114 LYS PHE CYS ALA ASP LYS GLY SER HIS LEU LEU THR PHE SEQRES 4 D 114 PRO ASP ASN GLN GLY VAL LYS LEU PHE GLY GLU TYR LEU SEQRES 5 D 114 GLY GLN ASP PHE TYR TRP ILE GLY LEU ARG ASN ILE ASP SEQRES 6 D 114 GLY TRP ARG TRP GLU GLY GLY PRO ALA LEU SER LEU ARG SEQRES 7 D 114 ILE LEU THR ASN SER LEU ILE GLN ARG CYS GLY ALA ILE SEQRES 8 D 114 HIS ARG ASN GLY LEU GLN ALA SER SER CYS GLU VAL ALA SEQRES 9 D 114 LEU GLN TRP ILE CYS LYS LYS VAL LEU TYR
HET CA A 101 1 HET CA A 102 1 HET CA B 101 1
HETNAM CA CALCIUM ION
FORMUL 5 CA 3(CA 2+) FORMUL 8 HOH *249(H2 O)
HELIX 1 1 LYS A 28 GLU A 31 5 4 HELIX 2 2 LYS B 28 GLU B 31 5 4 HELIX 3 3 ASP C 95 LYS C 106 1 12 HELIX 4 4 GLY C 118 GLY C 123 1 6 HELIX 5 5 GLU C 124 LEU C 126 5 3 HELIX 6 6 ASP D 95 LYS D 106 1 12 HELIX 7 7 GLY D 118 GLY D 123 1 6 HELIX 8 8 GLU D 124 LEU D 126 5 3
SHEET 1 A 2 TRP A 2 VAL A 3 0 SHEET 2 A 2 LYS A 25 SER A 26 -1 O LYS A 25 N VAL A 3 SHEET 1 B 4 LEU A 9 PRO A 10 0 SHEET 2 B 4 MET A 92 THR A 99 1 O THR A 99 N LEU A 9 SHEET 3 B 4 THR A 73 VAL A 81 -1 N LEU A 76 O ILE A 94 SHEET 4 B 4 PHE A 35 THR A 39 -1 N SER A 37 O HIS A 79 SHEET 1 C 3 LYS A 19 GLN A 23 0 SHEET 2 C 3 TRP A 59 VAL A 62 -1 O LEU A 60 N VAL A 22 SHEET 3 C 3 PHE A 51 ILE A 53 -1 N ILE A 52 O LYS A 61 SHEET 1 D 2 TRP B 2 VAL B 3 0 SHEET 2 D 2 LYS B 25 SER B 26 -1 O LYS B 25 N VAL B 3 SHEET 1 E 4 LEU B 9 PRO B 10 0 SHEET 2 E 4 MET B 92 THR B 99 1 O THR B 99 N LEU B 9 SHEET 3 E 4 THR B 73 VAL B 81 -1 N TYR B 74 O ILE B 96 SHEET 4 E 4 PHE B 35 GLY B 40 -1 N PHE B 35 O VAL B 81 SHEET 1 F 3 LYS B 19 GLN B 23 0 SHEET 2 F 3 TRP B 59 VAL B 62 -1 O LEU B 60 N LEU B 21 SHEET 3 F 3 PHE B 51 ILE B 53 -1 N ILE B 52 O LYS B 61 SHEET 1 G 5 TRP C 79 ASN C 82 0 SHEET 2 G 5 HIS C 85 PHE C 89 -1 O TYR C 87 N THR C 80 SHEET 3 G 5 GLN C 181 LYS C 186 -1 O LYS C 186 N CYS C 86 SHEET 4 G 5 TYR C 131 ASN C 137 1 N TRP C 132 O GLN C 181 SHEET 5 G 5 TRP C 141 TRP C 143 -1 O ARG C 142 N ARG C 136 SHEET 1 H 5 HIS C 109 LEU C 110 0 SHEET 2 H 5 GLN C 181 LYS C 186 -1 O LYS C 185 N HIS C 109 SHEET 3 H 5 TYR C 131 ASN C 137 1 N TRP C 132 O GLN C 181 SHEET 4 H 5 CYS C 163 HIS C 167 -1 O GLY C 164 N LEU C 135 SHEET 5 H 5 GLY C 170 SER C 174 -1 O GLY C 170 N HIS C 167 SHEET 1 I 5 THR D 80 ASN D 82 0 SHEET 2 I 5 HIS D 85 PHE D 89 -1 O TYR D 87 N THR D 80 SHEET 3 I 5 GLN D 181 VAL D 187 -1 O LYS D 186 N CYS D 86 SHEET 4 I 5 TYR D 131 ASN D 137 1 N TRP D 132 O GLN D 181 SHEET 5 I 5 TRP D 141 TRP D 143 -1 O ARG D 142 N ARG D 136 SHEET 1 J 6 HIS D 109 LEU D 110 0 SHEET 2 J 6 GLN D 181 VAL D 187 -1 O LYS D 185 N HIS D 109 SHEET 3 J 6 TYR D 131 ASN D 137 1 N TRP D 132 O GLN D 181 SHEET 4 J 6 CYS D 163 HIS D 167 -1 O GLY D 164 N LEU D 135 SHEET 5 J 6 GLY D 170 SER D 174 -1 O GLN D 172 N ALA D 165 SHEET 6 J 6 ILE D 154 LEU D 155 1 N LEU D 155 O ALA D 173
SSBOND 1 CYS C 75 CYS C 86 1555 1555 2.05 SSBOND 2 CYS C 103 CYS C 184 1555 1555 2.05 SSBOND 3 CYS C 163 CYS C 176 1555 1555 2.04 SSBOND 4 CYS D 103 CYS D 184 1555 1555 2.05 SSBOND 5 CYS D 163 CYS D 176 1555 1555 2.05
LINK OE1 GLU A 11 CA CA A 102 1555 1555 2.45 LINK OE2 GLU A 11 CA CA A 101 1555 1555 2.57 LINK OD1 ASP A 67 CA CA A 101 1555 1555 2.03 LINK OE2 GLU A 69 CA CA A 102 1555 1555 2.02 LINK OE2 GLU A 69 CA CA A 101 1555 1555 2.73 LINK OD1 ASP A 100 CA CA A 102 1555 1555 2.45 LINK OD2 ASP A 100 CA CA A 102 1555 1555 2.36 LINK OE1 GLU B 11 CA CA B 101 1555 1555 2.50 LINK OD2 ASP B 67 CA CA B 101 1555 1555 2.51 LINK OE1 GLU B 69 CA CA B 101 1555 1555 2.24 LINK CA CA A 101 O HOH A 246 1555 1555 2.58
CISPEP 1 GLY A 15 PRO A 16 0 0.26 CISPEP 2 PHE A 17 PRO A 18 0 0.27 CISPEP 3 PRO A 46 PRO A 47 0 -0.27 CISPEP 4 GLY B 15 PRO B 16 0 0.02 CISPEP 5 PHE B 17 PRO B 18 0 -0.17 CISPEP 6 PRO B 46 PRO B 47 0 0.04
SITE 1 AC1 4 GLU A 11 ASP A 67 GLU A 69 HOH A 246 SITE 1 AC2 3 GLU A 11 GLU A 69 ASP A 100 SITE 1 AC3 3 GLU B 11 ASP B 67 GLU B 69
CRYST1 53.776 90.526 107.593 90.00 90.00 90.00 P 21 21 21 8
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 0.018596 0.000000 0.000000 0.00000
SCALE2 0.000000 0.011047 0.000000 0.00000
SCALE3 0.000000 0.000000 0.009294 0.00000