10 20 30 40 50 60 70 80 3F7Q - Header ----|----|----|----|----|----|----|----|----|----|----|----|----|----|----|----| Asymmetric UnitHEADER CELL ADHESION 10-NOV-08 3F7Q
TITLE FIRST PAIR OF FIBRONECTIN TYPE III DOMAINS AND PART OF THE TITLE 2 CONNECTING SEGMENT OF THE INTEGRIN BETA4
COMPND MOL_ID: 1; COMPND 2 MOLECULE: INTEGRIN BETA-4; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: FIBRONECTIN TYPE-III, RESIDUES 1126-1355; COMPND 5 SYNONYM: GP150; COMPND 6 ENGINEERED: YES
SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: ITGB4; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: DERIVATIVE OF PET15B
KEYWDS INTEGRIN, HEMIDESMOSOME, CELL ADHESION, CARCINOMA, KEYWDS 2 EPIDERMOLYSIS BULLOSA, ALTERNATIVE SPLICING, DISEASE KEYWDS 3 MUTATION, GLYCOPROTEIN, MEMBRANE, PHOSPHOPROTEIN, KEYWDS 4 POLYMORPHISM, RECEPTOR, TRANSMEMBRANE
EXPDTA X-RAY DIFFRACTION
AUTHOR J.M.DE PEREDA
REVDAT 2 28-APR-09 3F7Q 1 JRNL REVDAT 1 10-MAR-09 3F7Q 0
JRNL AUTH J.M.DE PEREDA,M.P.LILLO,A.SONNENBERG JRNL TITL STRUCTURAL BASIS OF THE INTERACTION BETWEEN JRNL TITL 2 INTEGRIN ALPHA6BETA4 AND PLECTIN AT THE JRNL TITL 3 HEMIDESMOSOMES JRNL REF EMBO J. V. 28 1180 2009 JRNL REFN ISSN 0261-4189 JRNL PMID 19242489 JRNL DOI 10.1038/EMBOJ.2009.48
REMARK 1
REMARK 2 REMARK 2 RESOLUTION. 1.75 ANGSTROMS.
REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VICENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE- REMARK 3 : KUNSTLEVE,LI-WEI HUNG,ROBERT IMMORMINO, REMARK 3 : TOM IOERGER,AIRLIE MCCOY,ERIK MCKEE,NIGEL REMARK 3 : MORIARTY,REETAL PAI,RANDY READ,JANE REMARK 3 : RICHARDSON,DAVID RICHARDSON,TOD ROMO,JIM REMARK 3 : SACCHETTINI,NICHOLAS SAUTER,JACOB SMITH, REMARK 3 : LAURENT STORONI,TOM TERWILLIGER,PETER REMARK 3 : ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.75 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 22.27 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.870 REMARK 3 COMPLETENESS FOR RANGE (%) : 91.6 REMARK 3 NUMBER OF REFLECTIONS : 50835 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.157 REMARK 3 R VALUE (WORKING SET) : 0.155 REMARK 3 FREE R VALUE : 0.182 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.090 REMARK 3 FREE R VALUE TEST SET COUNT : 2589 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 22.2735 - 4.5738 0.95 2790 144 0.1547 0.1546 REMARK 3 2 4.5738 - 3.6355 0.96 2799 154 0.1316 0.1317 REMARK 3 3 3.6355 - 3.1774 0.95 2777 163 0.1395 0.1633 REMARK 3 4 3.1774 - 2.8876 0.95 2783 139 0.1434 0.2092 REMARK 3 5 2.8876 - 2.6810 0.94 2761 159 0.1433 0.1667 REMARK 3 6 2.6810 - 2.5231 0.94 2713 160 0.1381 0.1502 REMARK 3 7 2.5231 - 2.3969 0.94 2744 113 0.1327 0.1790 REMARK 3 8 2.3969 - 2.2927 0.93 2757 150 0.1341 0.1860 REMARK 3 9 2.2927 - 2.2045 0.90 2660 141 0.1379 0.1619 REMARK 3 10 2.2045 - 2.1285 0.92 2660 140 0.1392 0.1857 REMARK 3 11 2.1285 - 2.0620 0.90 2599 137 0.1499 0.1710 REMARK 3 12 2.0620 - 2.0031 0.91 2711 129 0.1557 0.1856 REMARK 3 13 2.0031 - 1.9504 0.90 2616 152 0.1643 0.2113 REMARK 3 14 1.9504 - 1.9028 0.89 2598 139 0.1804 0.2404 REMARK 3 15 1.9028 - 1.8596 0.90 2638 143 0.1991 0.2617 REMARK 3 16 1.8596 - 1.8200 0.90 2644 159 0.2048 0.2332 REMARK 3 17 1.8200 - 1.7836 0.89 2585 135 0.2231 0.2205 REMARK 3 18 1.7836 - 1.7500 0.82 2411 132 0.2548 0.3079 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : 0.43 REMARK 3 B_SOL : 49.66 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.190 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 17.530 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 25.70 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 26.82 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -2.43820 REMARK 3 B22 (A**2) : -5.44840 REMARK 3 B33 (A**2) : -8.26380 REMARK 3 B12 (A**2) : 3.80150 REMARK 3 B13 (A**2) : -1.07710 REMARK 3 B23 (A**2) : 1.32350 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.005 6981 REMARK 3 ANGLE : 0.878 12628 REMARK 3 CHIRALITY : 0.068 513 REMARK 3 PLANARITY : 0.004 1111 REMARK 3 DIHEDRAL : 17.145 1804 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 12 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN A AND RESSEQ 1126-1207 REMARK 3 ORIGIN FOR THE GROUP (A): 16.2218 -3.8919 43.8523 REMARK 3 T TENSOR REMARK 3 T11: 0.1365 T22: 0.1649 REMARK 3 T33: 0.1673 T12: -0.0237 REMARK 3 T13: -0.0013 T23: -0.0069 REMARK 3 L TENSOR REMARK 3 L11: 0.2905 L22: 1.0082 REMARK 3 L33: 1.0326 L12: 0.0068 REMARK 3 L13: -0.3696 L23: -0.1755 REMARK 3 S TENSOR REMARK 3 S11: 0.0549 S12: -0.0958 S13: -0.0195 REMARK 3 S21: -0.0137 S22: -0.0454 S23: -0.0801 REMARK 3 S31: -0.1011 S32: 0.1149 S33: 0.0000 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN A AND RESSEQ 1208-1229 REMARK 3 ORIGIN FOR THE GROUP (A): 10.0968 -16.4944 26.9127 REMARK 3 T TENSOR REMARK 3 T11: 0.2281 T22: 0.2171 REMARK 3 T33: 0.2233 T12: 0.0184 REMARK 3 T13: -0.0120 T23: 0.0019 REMARK 3 L TENSOR REMARK 3 L11: -0.1296 L22: 0.0795 REMARK 3 L33: 0.0652 L12: 0.0354 REMARK 3 L13: -0.2652 L23: 0.1980 REMARK 3 S TENSOR REMARK 3 S11: -0.0276 S12: 0.1117 S13: 0.0791 REMARK 3 S21: -0.0383 S22: 0.0436 S23: 0.0443 REMARK 3 S31: -0.0610 S32: 0.0046 S33: 0.0001 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN A AND RESSEQ 1230-1254 REMARK 3 ORIGIN FOR THE GROUP (A): 2.4776 -27.4318 14.2894 REMARK 3 T TENSOR REMARK 3 T11: 0.1960 T22: 0.2021 REMARK 3 T33: 0.1753 T12: 0.0351 REMARK 3 T13: -0.0094 T23: 0.0062 REMARK 3 L TENSOR REMARK 3 L11: 0.4463 L22: 0.1274 REMARK 3 L33: 0.5180 L12: -0.2367 REMARK 3 L13: -0.2710 L23: -0.2070 REMARK 3 S TENSOR REMARK 3 S11: -0.0660 S12: -0.0465 S13: 0.0957 REMARK 3 S21: -0.0802 S22: 0.0432 S23: 0.0558 REMARK 3 S31: -0.2308 S32: -0.1585 S33: -0.0000 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN A AND RESSEQ 1255-1282 REMARK 3 ORIGIN FOR THE GROUP (A): 7.3804 -36.3143 11.5727 REMARK 3 T TENSOR REMARK 3 T11: 0.1877 T22: 0.1821 REMARK 3 T33: 0.1794 T12: 0.0197 REMARK 3 T13: -0.0088 T23: 0.0198 REMARK 3 L TENSOR REMARK 3 L11: 0.4528 L22: 0.1905 REMARK 3 L33: 0.4050 L12: -0.4281 REMARK 3 L13: -0.2584 L23: 0.6791 REMARK 3 S TENSOR REMARK 3 S11: -0.0730 S12: 0.0210 S13: -0.1065 REMARK 3 S21: 0.1622 S22: 0.0671 S23: -0.1749 REMARK 3 S31: -0.0564 S32: 0.0445 S33: 0.0000 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN A AND RESSEQ 1283-1317 REMARK 3 ORIGIN FOR THE GROUP (A): 4.2901 -37.1152 12.6306 REMARK 3 T TENSOR REMARK 3 T11: 0.1603 T22: 0.2075 REMARK 3 T33: 0.2109 T12: -0.0039 REMARK 3 T13: -0.0151 T23: 0.0178 REMARK 3 L TENSOR REMARK 3 L11: 0.6008 L22: 0.3258 REMARK 3 L33: 0.1353 L12: -0.0093 REMARK 3 L13: -0.0424 L23: -0.3951 REMARK 3 S TENSOR REMARK 3 S11: 0.0651 S12: -0.0016 S13: -0.1195 REMARK 3 S21: 0.0397 S22: 0.0989 S23: -0.0045 REMARK 3 S31: 0.0086 S32: -0.0890 S33: 0.0000 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN A AND RESSEQ 1318-1339 REMARK 3 ORIGIN FOR THE GROUP (A): -3.2646 -32.6168 1.7199 REMARK 3 T TENSOR REMARK 3 T11: 0.2470 T22: 0.2969 REMARK 3 T33: 0.2578 T12: -0.0250 REMARK 3 T13: -0.0207 T23: 0.0252 REMARK 3 L TENSOR REMARK 3 L11: 0.2935 L22: 0.1402 REMARK 3 L33: -0.0825 L12: -0.0704 REMARK 3 L13: 0.3822 L23: 0.1168 REMARK 3 S TENSOR REMARK 3 S11: -0.3178 S12: -0.0355 S13: 0.0698 REMARK 3 S21: 0.1187 S22: 0.2345 S23: -0.1283 REMARK 3 S31: -0.0919 S32: 0.0050 S33: 0.0000 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN B AND RESSEQ 1126-1163 REMARK 3 ORIGIN FOR THE GROUP (A): 20.5622 -38.4006 28.4976 REMARK 3 T TENSOR REMARK 3 T11: 0.1810 T22: 0.1664 REMARK 3 T33: 0.1773 T12: 0.0262 REMARK 3 T13: 0.0061 T23: -0.0221 REMARK 3 L TENSOR REMARK 3 L11: 0.1664 L22: 0.3956 REMARK 3 L33: 0.5210 L12: -0.1687 REMARK 3 L13: 0.2619 L23: -0.5234 REMARK 3 S TENSOR REMARK 3 S11: 0.0431 S12: 0.0836 S13: 0.0342 REMARK 3 S21: 0.0245 S22: -0.0298 S23: -0.0894 REMARK 3 S31: 0.1120 S32: 0.0375 S33: 0.0000 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN B AND RESSEQ 1164-1215 REMARK 3 ORIGIN FOR THE GROUP (A): 14.2193 -37.2544 30.9006 REMARK 3 T TENSOR REMARK 3 T11: 0.1774 T22: 0.1600 REMARK 3 T33: 0.1595 T12: 0.0032 REMARK 3 T13: 0.0045 T23: 0.0062 REMARK 3 L TENSOR REMARK 3 L11: -0.0656 L22: 0.7308 REMARK 3 L33: 0.5114 L12: -0.2848 REMARK 3 L13: 0.0927 L23: 0.0170 REMARK 3 S TENSOR REMARK 3 S11: 0.0614 S12: 0.0729 S13: 0.0165 REMARK 3 S21: 0.0516 S22: 0.0065 S23: 0.0023 REMARK 3 S31: 0.0667 S32: -0.1355 S33: -0.0000 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN B AND RESSEQ 1216-1249 REMARK 3 ORIGIN FOR THE GROUP (A): 1.7599 -13.9738 55.6634 REMARK 3 T TENSOR REMARK 3 T11: 0.1835 T22: 0.1915 REMARK 3 T33: 0.2050 T12: -0.0510 REMARK 3 T13: 0.0246 T23: -0.0095 REMARK 3 L TENSOR REMARK 3 L11: 0.2710 L22: 0.1935 REMARK 3 L33: 0.5629 L12: -0.1537 REMARK 3 L13: 0.4433 L23: -0.2601 REMARK 3 S TENSOR REMARK 3 S11: 0.0198 S12: 0.1458 S13: -0.0136 REMARK 3 S21: -0.0254 S22: 0.0112 S23: 0.0554 REMARK 3 S31: 0.1949 S32: -0.2238 S33: -0.0000 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN B AND RESSEQ 1250-1277 REMARK 3 ORIGIN FOR THE GROUP (A): 8.3549 -4.5087 60.4161 REMARK 3 T TENSOR REMARK 3 T11: 0.1878 T22: 0.1785 REMARK 3 T33: 0.1625 T12: -0.0147 REMARK 3 T13: -0.0116 T23: 0.0126 REMARK 3 L TENSOR REMARK 3 L11: 0.1898 L22: 0.1382 REMARK 3 L33: 0.5624 L12: 0.1179 REMARK 3 L13: 0.0764 L23: 0.2807 REMARK 3 S TENSOR REMARK 3 S11: -0.0327 S12: -0.0386 S13: 0.0462 REMARK 3 S21: -0.2314 S22: 0.0300 S23: -0.1110 REMARK 3 S31: -0.0743 S32: -0.0288 S33: -0.0000 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: CHAIN B AND RESSEQ 1278-1301 REMARK 3 ORIGIN FOR THE GROUP (A): 2.8647 -6.0406 63.3346 REMARK 3 T TENSOR REMARK 3 T11: 0.1790 T22: 0.1795 REMARK 3 T33: 0.1752 T12: -0.0052 REMARK 3 T13: 0.0160 T23: -0.0034 REMARK 3 L TENSOR REMARK 3 L11: 0.2503 L22: 0.1003 REMARK 3 L33: 0.4059 L12: 0.1777 REMARK 3 L13: -0.3265 L23: -0.3493 REMARK 3 S TENSOR REMARK 3 S11: -0.0228 S12: -0.0647 S13: 0.0418 REMARK 3 S21: 0.1403 S22: 0.1162 S23: 0.0073 REMARK 3 S31: 0.0373 S32: -0.0825 S33: 0.0000 REMARK 3 TLS GROUP : 12 REMARK 3 SELECTION: CHAIN B AND RESSEQ 1302-1339 REMARK 3 ORIGIN FOR THE GROUP (A): 0.0904 -8.7685 64.3113 REMARK 3 T TENSOR REMARK 3 T11: 0.1743 T22: 0.1941 REMARK 3 T33: 0.1964 T12: 0.0043 REMARK 3 T13: 0.0014 T23: -0.0069 REMARK 3 L TENSOR REMARK 3 L11: 0.5510 L22: -0.0533 REMARK 3 L33: 0.0780 L12: -0.3855 REMARK 3 L13: -0.2026 L23: -0.1887 REMARK 3 S TENSOR REMARK 3 S11: -0.0853 S12: -0.0440 S13: -0.0440 REMARK 3 S21: 0.0559 S22: 0.0842 S23: 0.0049 REMARK 3 S31: 0.0748 S32: -0.0165 S33: 0.0000 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL
REMARK 4 REMARK 4 3F7Q COMPLIES WITH FORMAT V. 3.20, 01-DEC-08
REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 14-NOV-08. REMARK 100 THE RCSB ID CODE IS RCSB050251.
REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 23-NOV-04 REMARK 200 TEMPERATURE (KELVIN) : 120 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : ENRAF-NONIUS FR591 REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : MAR SCANNER 345 MM PLATE REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 50835 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.750 REMARK 200 RESOLUTION RANGE LOW (A) : 69.480 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 91.6 REMARK 200 DATA REDUNDANCY : 2.300 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 16.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.75 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.81 REMARK 200 COMPLETENESS FOR SHELL (%) : 84.8 REMARK 200 DATA REDUNDANCY IN SHELL : 2.20 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 3.800 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 1QG3 REMARK 200 REMARK 200 REMARK: NULL
REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 54.84 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.72 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M TRIS-HCL, 0.3M NACL, 24% PEG REMARK 280 200, PH 7.5, VAPOR DIFFUSION, TEMPERATURE 298K
REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL
REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THE MONOMERIC FORM IS BELIEVED TO BE THE BIOLOGICAL UNIT.
REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000
REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 1122 REMARK 465 SER A 1123 REMARK 465 HIS A 1124 REMARK 465 MET A 1125 REMARK 465 GLY A 1340 REMARK 465 GLU A 1341 REMARK 465 ASP A 1342 REMARK 465 TYR A 1343 REMARK 465 ASP A 1344 REMARK 465 SER A 1345 REMARK 465 PHE A 1346 REMARK 465 LEU A 1347 REMARK 465 MET A 1348 REMARK 465 TYR A 1349 REMARK 465 SER A 1350 REMARK 465 ASP A 1351 REMARK 465 ASP A 1352 REMARK 465 VAL A 1353 REMARK 465 LEU A 1354 REMARK 465 ARG A 1355 REMARK 465 GLY B 1122 REMARK 465 SER B 1123 REMARK 465 HIS B 1124 REMARK 465 MET B 1125 REMARK 465 GLY B 1340 REMARK 465 GLU B 1341 REMARK 465 ASP B 1342 REMARK 465 TYR B 1343 REMARK 465 ASP B 1344 REMARK 465 SER B 1345 REMARK 465 PHE B 1346 REMARK 465 LEU B 1347 REMARK 465 MET B 1348 REMARK 465 TYR B 1349 REMARK 465 SER B 1350 REMARK 465 ASP B 1351 REMARK 465 ASP B 1352 REMARK 465 VAL B 1353 REMARK 465 LEU B 1354 REMARK 465 ARG B 1355
REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A1166 -133.01 -93.64 REMARK 500 PRO A1179 45.98 -83.62 REMARK 500 ASN A1261 -155.58 -83.81 REMARK 500 GLU B1168 -7.37 -52.06 REMARK 500 PRO B1179 43.55 -83.37 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 SER B 1169 GLU B 1170 146.36 REMARK 500 REMARK 500 REMARK: NULL
REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 601 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PEG A 701 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 1PE A 703 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 706 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 707 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL B 602 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PEG B 702 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PG4 B 704 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO B 705
REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1QG3 RELATED DB: PDB REMARK 900 SIMILAR FRAGMENT LACKING THE CONNECTING SEGMENT REMARK 900 RELATED ID: 3F7P RELATED DB: PDB REMARK 900 STRUCTURE OF A SIMILAR FRAGMENT OF INTEGRIN BETA4 IN REMARK 900 COMPLEX WITH PLECTIN REMARK 900 RELATED ID: 3F7R RELATED DB: PDB REMARK 900 STRUCTURE AT 2.04A OF AN EQUIVALENT FRAGMENT OF INTEGRIN REMARK 900 BETA4
REMARK 999 REMARK 999 SEQUENCE REMARK 999 THE SEQUENCE IS BASED ON REFERENCE 2 IN THE DATABASE, ITB4_HUMAN.
DBREF 3F7Q A 1126 1355 UNP P16144 ITB4_HUMAN 1126 1355 DBREF 3F7Q B 1126 1355 UNP P16144 ITB4_HUMAN 1126 1355
SEQADV 3F7Q GLY A 1122 UNP P16144 EXPRESSION TAG SEQADV 3F7Q SER A 1123 UNP P16144 EXPRESSION TAG SEQADV 3F7Q HIS A 1124 UNP P16144 EXPRESSION TAG SEQADV 3F7Q MET A 1125 UNP P16144 EXPRESSION TAG SEQADV 3F7Q GLY B 1122 UNP P16144 EXPRESSION TAG SEQADV 3F7Q SER B 1123 UNP P16144 EXPRESSION TAG SEQADV 3F7Q HIS B 1124 UNP P16144 EXPRESSION TAG SEQADV 3F7Q MET B 1125 UNP P16144 EXPRESSION TAG
SEQRES 1 A 234 GLY SER HIS MET ASP LEU GLY ALA PRO GLN ASN PRO ASN SEQRES 2 A 234 ALA LYS ALA ALA GLY SER ARG LYS ILE HIS PHE ASN TRP SEQRES 3 A 234 LEU PRO PRO SER GLY LYS PRO MET GLY TYR ARG VAL LYS SEQRES 4 A 234 TYR TRP ILE GLN GLY ASP SER GLU SER GLU ALA HIS LEU SEQRES 5 A 234 LEU ASP SER LYS VAL PRO SER VAL GLU LEU THR ASN LEU SEQRES 6 A 234 TYR PRO TYR CYS ASP TYR GLU MET LYS VAL CYS ALA TYR SEQRES 7 A 234 GLY ALA GLN GLY GLU GLY PRO TYR SER SER LEU VAL SER SEQRES 8 A 234 CYS ARG THR HIS GLN GLU VAL PRO SER GLU PRO GLY ARG SEQRES 9 A 234 LEU ALA PHE ASN VAL VAL SER SER THR VAL THR GLN LEU SEQRES 10 A 234 SER TRP ALA GLU PRO ALA GLU THR ASN GLY GLU ILE THR SEQRES 11 A 234 ALA TYR GLU VAL CYS TYR GLY LEU VAL ASN ASP ASP ASN SEQRES 12 A 234 ARG PRO ILE GLY PRO MET LYS LYS VAL LEU VAL ASP ASN SEQRES 13 A 234 PRO LYS ASN ARG MET LEU LEU ILE GLU ASN LEU ARG GLU SEQRES 14 A 234 SER GLN PRO TYR ARG TYR THR VAL LYS ALA ARG ASN GLY SEQRES 15 A 234 ALA GLY TRP GLY PRO GLU ARG GLU ALA ILE ILE ASN LEU SEQRES 16 A 234 ALA THR GLN PRO LYS ARG PRO MET SER ILE PRO ILE ILE SEQRES 17 A 234 PRO ASP ILE PRO ILE VAL ASP ALA GLN SER GLY GLU ASP SEQRES 18 A 234 TYR ASP SER PHE LEU MET TYR SER ASP ASP VAL LEU ARG SEQRES 1 B 234 GLY SER HIS MET ASP LEU GLY ALA PRO GLN ASN PRO ASN SEQRES 2 B 234 ALA LYS ALA ALA GLY SER ARG LYS ILE HIS PHE ASN TRP SEQRES 3 B 234 LEU PRO PRO SER GLY LYS PRO MET GLY TYR ARG VAL LYS SEQRES 4 B 234 TYR TRP ILE GLN GLY ASP SER GLU SER GLU ALA HIS LEU SEQRES 5 B 234 LEU ASP SER LYS VAL PRO SER VAL GLU LEU THR ASN LEU SEQRES 6 B 234 TYR PRO TYR CYS ASP TYR GLU MET LYS VAL CYS ALA TYR SEQRES 7 B 234 GLY ALA GLN GLY GLU GLY PRO TYR SER SER LEU VAL SER SEQRES 8 B 234 CYS ARG THR HIS GLN GLU VAL PRO SER GLU PRO GLY ARG SEQRES 9 B 234 LEU ALA PHE ASN VAL VAL SER SER THR VAL THR GLN LEU SEQRES 10 B 234 SER TRP ALA GLU PRO ALA GLU THR ASN GLY GLU ILE THR SEQRES 11 B 234 ALA TYR GLU VAL CYS TYR GLY LEU VAL ASN ASP ASP ASN SEQRES 12 B 234 ARG PRO ILE GLY PRO MET LYS LYS VAL LEU VAL ASP ASN SEQRES 13 B 234 PRO LYS ASN ARG MET LEU LEU ILE GLU ASN LEU ARG GLU SEQRES 14 B 234 SER GLN PRO TYR ARG TYR THR VAL LYS ALA ARG ASN GLY SEQRES 15 B 234 ALA GLY TRP GLY PRO GLU ARG GLU ALA ILE ILE ASN LEU SEQRES 16 B 234 ALA THR GLN PRO LYS ARG PRO MET SER ILE PRO ILE ILE SEQRES 17 B 234 PRO ASP ILE PRO ILE VAL ASP ALA GLN SER GLY GLU ASP SEQRES 18 B 234 TYR ASP SER PHE LEU MET TYR SER ASP ASP VAL LEU ARG
HET CL A 601 1 HET PEG A 701 7 HET 1PE A 703 16 HET EDO A 706 4 HET EDO A 707 4 HET CL B 602 1 HET PEG B 702 7 HET PG4 B 704 13 HET EDO B 705 4
HETNAM CL CHLORIDE ION HETNAM PEG DI(HYDROXYETHYL)ETHER HETNAM 1PE PENTAETHYLENE GLYCOL HETNAM EDO 1,2-ETHANEDIOL HETNAM PG4 TETRAETHYLENE GLYCOL
HETSYN 1PE PEG400 HETSYN EDO ETHYLENE GLYCOL
FORMUL 3 CL 2(CL 1-) FORMUL 4 PEG 2(C4 H10 O3) FORMUL 5 1PE C10 H22 O6 FORMUL 6 EDO 3(C2 H6 O2) FORMUL 10 PG4 C8 H18 O5 FORMUL 12 HOH *502(H2 O)
HELIX 1 1 SER A 1167 ALA A 1171 5 5 HELIX 2 2 ASN A 1315 GLN A 1319 5 5 HELIX 3 3 SER B 1167 ALA B 1171 5 5 HELIX 4 4 ASN B 1315 GLN B 1319 5 5
SHEET 1 A 3 GLN A1131 ALA A1137 0 SHEET 2 A 3 ILE A1143 LEU A1148 -1 O HIS A1144 N LYS A1136 SHEET 3 A 3 SER A1180 LEU A1183 -1 O LEU A1183 N ILE A1143 SHEET 1 B 4 HIS A1172 SER A1176 0 SHEET 2 B 4 GLY A1156 ILE A1163 -1 N TYR A1157 O SER A1176 SHEET 3 B 4 ASP A1191 GLY A1200 -1 O GLU A1193 N TRP A1162 SHEET 4 B 4 GLY A1203 GLU A1204 -1 O GLY A1203 N GLY A1200 SHEET 1 C 4 HIS A1172 SER A1176 0 SHEET 2 C 4 GLY A1156 ILE A1163 -1 N TYR A1157 O SER A1176 SHEET 3 C 4 ASP A1191 GLY A1200 -1 O GLU A1193 N TRP A1162 SHEET 4 C 4 VAL A1211 ARG A1214 -1 O CYS A1213 N TYR A1192 SHEET 1 D 4 ALA A1227 VAL A1230 0 SHEET 2 D 4 THR A1236 SER A1239 -1 O SER A1239 N ALA A1227 SHEET 3 D 4 MET A1282 GLU A1286 -1 O LEU A1283 N LEU A1238 SHEET 4 D 4 ILE A1334 ASP A1336 1 O VAL A1335 N GLU A1286 SHEET 1 E 4 LYS A1271 LYS A1272 0 SHEET 2 E 4 ALA A1252 LEU A1259 -1 N TYR A1257 O LYS A1271 SHEET 3 E 4 TYR A1294 ASN A1302 -1 O ARG A1301 N ALA A1252 SHEET 4 E 4 GLY A1305 TRP A1306 -1 O GLY A1305 N ASN A1302 SHEET 1 F 4 LYS A1271 LYS A1272 0 SHEET 2 F 4 ALA A1252 LEU A1259 -1 N TYR A1257 O LYS A1271 SHEET 3 F 4 TYR A1294 ASN A1302 -1 O ARG A1301 N ALA A1252 SHEET 4 F 4 ARG A1310 ILE A1314 -1 O ALA A1312 N TYR A1296 SHEET 1 G 3 GLN B1131 ALA B1137 0 SHEET 2 G 3 ILE B1143 LEU B1148 -1 O LEU B1148 N GLN B1131 SHEET 3 G 3 SER B1180 LEU B1183 -1 O LEU B1183 N ILE B1143 SHEET 1 H 4 HIS B1172 SER B1176 0 SHEET 2 H 4 GLY B1156 ILE B1163 -1 N TYR B1161 O HIS B1172 SHEET 3 H 4 ASP B1191 GLY B1200 -1 O GLU B1193 N TRP B1162 SHEET 4 H 4 GLY B1203 GLU B1204 -1 O GLY B1203 N GLY B1200 SHEET 1 I 4 HIS B1172 SER B1176 0 SHEET 2 I 4 GLY B1156 ILE B1163 -1 N TYR B1161 O HIS B1172 SHEET 3 I 4 ASP B1191 GLY B1200 -1 O GLU B1193 N TRP B1162 SHEET 4 I 4 VAL B1211 ARG B1214 -1 O CYS B1213 N TYR B1192 SHEET 1 J 4 ALA B1227 SER B1232 0 SHEET 2 J 4 VAL B1235 SER B1239 -1 O SER B1239 N ALA B1227 SHEET 3 J 4 MET B1282 GLU B1286 -1 O ILE B1285 N THR B1236 SHEET 4 J 4 ILE B1334 ASP B1336 1 O VAL B1335 N GLU B1286 SHEET 1 K 4 LYS B1271 LYS B1272 0 SHEET 2 K 4 ALA B1252 LEU B1259 -1 N TYR B1257 O LYS B1271 SHEET 3 K 4 TYR B1294 ASN B1302 -1 O ARG B1301 N ALA B1252 SHEET 4 K 4 GLY B1305 TRP B1306 -1 O GLY B1305 N ASN B1302 SHEET 1 L 4 LYS B1271 LYS B1272 0 SHEET 2 L 4 ALA B1252 LEU B1259 -1 N TYR B1257 O LYS B1271 SHEET 3 L 4 TYR B1294 ASN B1302 -1 O ARG B1301 N ALA B1252 SHEET 4 L 4 ARG B1310 ILE B1314 -1 O ALA B1312 N TYR B1296
SITE 1 AC1 6 HOH A 238 GLY A1139 SER A1140 ARG A1141 SITE 2 AC1 6 LYS A1142 LYS B1142 SITE 1 AC2 3 ASN A1185 TYR A1187 GLU B1245 SITE 1 AC3 5 HOH A 201 GLU A1254 LYS A1272 GLU B1286 SITE 2 AC3 5 ILE B1334 SITE 1 AC4 2 GLU A1170 HIS A1172 SITE 1 AC5 2 GLU A1222 GLU B1170 SITE 1 AC6 5 LYS A1142 GLY B1139 SER B1140 ARG B1141 SITE 2 AC6 5 LYS B1142 SITE 1 AC7 4 HOH B 365 HOH B 418 ASN B1185 TYR B1187 SITE 1 AC8 5 GLU A1286 ILE A1326 HOH B 410 LYS B1272 SITE 2 AC8 5 LEU B1274 SITE 1 AC9 6 HOH B 252 TYR B1161 LEU B1174 GLU B1182 SITE 2 AC9 6 LEU B1183 THR B1184
CRYST1 43.110 49.470 74.360 107.22 96.06 106.60 P 1 2
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 0.023196 0.006915 0.005141 0.00000
SCALE2 0.000000 0.021093 0.007686 0.00000
SCALE3 0.000000 0.000000 0.014394 0.00000