10 20 30 40 50 60 70 80 3F5A - Header ----|----|----|----|----|----|----|----|----|----|----|----|----|----|----|----| Asymmetric UnitHEADER CELL ADHESION 03-NOV-08 3F5A
TITLE CRYSTAL STRUCTURE OF TOXOPLASMA GONDII MICRONEMAL PROTEIN 1 BOUND TO TITLE 2 3'SIALACNAC1-3
COMPND MOL_ID: 1; COMPND 2 MOLECULE: MICRONEMAL PROTEIN 1; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: N-TERMINAL DOMAIN: RESIDUES 17-262; COMPND 5 ENGINEERED: YES
SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: TOXOPLASMA GONDII; SOURCE 3 ORGANISM_TAXID: 383379; SOURCE 4 STRAIN: RH; SOURCE 5 GENE: MIC1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: ORIGAMI; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET
KEYWDS CELLULAR ADHESION, MICRONEMAL PROTEIN, TOXOPLASMA GONDII, KEYWDS 2 CARBOHYDRATE, FLUORINE, CELL ADHESION, CYTOPLASMIC VESICLE, LECTIN, KEYWDS 3 VIRULENCE
EXPDTA X-RAY DIFFRACTION
AUTHOR J.A.GARNETT,Y.LIU,T.FEIZI,S.J.MATTHEWS
REVDAT 3 13-JUL-11 3F5A 1 VERSN REVDAT 2 08-SEP-09 3F5A 1 JRNL REVDAT 1 28-JUL-09 3F5A 0
JRNL AUTH J.A.GARNETT,Y.LIU,E.LEON,S.A.ALLMAN,N.FRIEDRICH,S.SAOUROS, JRNL AUTH 2 S.CURRY,D.SOLDATI-FAVRE,B.G.DAVIS,T.FEIZI,S.MATTHEWS JRNL TITL DETAILED INSIGHTS FROM MICROARRAY AND CRYSTALLOGRAPHIC JRNL TITL 2 STUDIES INTO CARBOHYDRATE RECOGNITION BY MICRONEME PROTEIN 1 JRNL TITL 3 (MIC1) OF TOXOPLASMA GONDII. JRNL REF PROTEIN SCI. V. 18 1935 2009 JRNL REFN ISSN 0961-8368 JRNL PMID 19593815 JRNL DOI 10.1002/PRO.204
REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH T.M.BLUMENSCHEIN,N.FRIEDRICH,R.A.CHILDS,S.SAOUROS, REMARK 1 AUTH 2 E.P.CARPENTER,M.A.CAMPANERO-RHODES,P.SIMPSON,W.CHAI, REMARK 1 AUTH 3 T.KOUTROUKIDES,M.J.BLACKMAN,T.FEIZI,D.SOLDATI-FAVRE, REMARK 1 AUTH 4 S.MATTHEWS REMARK 1 TITL ATOMIC RESOLUTION INSIGHT INTO HOST CELL RECOGNITION BY REMARK 1 TITL 2 TOXOPLASMA GONDII. REMARK 1 REF EMBO J. V. 26 2808 2007 REMARK 1 REFN ISSN 0261-4189 REMARK 1 PMID 17491595 REMARK 1 DOI 10.1038/SJ.EMBOJ.7601704
REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS.
REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 27.75 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 97.9 REMARK 3 NUMBER OF REFLECTIONS : 23609 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.167 REMARK 3 R VALUE (WORKING SET) : 0.165 REMARK 3 FREE R VALUE : 0.189 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2626 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.00 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.05 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1754 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.95 REMARK 3 BIN R VALUE (WORKING SET) : 0.1890 REMARK 3 BIN FREE R VALUE SET COUNT : 180 REMARK 3 BIN FREE R VALUE : 0.2100 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1737 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 109 REMARK 3 SOLVENT ATOMS : 189 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 23.55 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 21.91 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.14000 REMARK 3 B22 (A**2) : 0.14000 REMARK 3 B33 (A**2) : -0.27000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.126 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.116 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.067 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 4.514 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.960 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.949 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1891 ; 0.013 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2559 ; 1.379 ; 1.993 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 232 ; 6.341 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 85 ;32.665 ;23.765 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 291 ;13.424 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 16 ; 9.557 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 275 ; 0.094 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1444 ; 0.005 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 840 ; 0.200 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1265 ; 0.301 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 143 ; 0.152 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 66 ; 0.180 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 22 ; 0.123 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1194 ; 0.871 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1844 ; 1.230 ; 2.000 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 779 ; 2.324 ; 3.000 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 712 ; 3.548 ; 4.500 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS
REMARK 4 REMARK 4 3F5A COMPLIES WITH FORMAT V. 3.30, 13-JUL-11
REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 11-NOV-08. REMARK 100 THE RCSB ID CODE IS RCSB050163.
REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 19-SEP-07 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : BM14 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.934 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 4 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 23609 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 33.170 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 200 DATA REDUNDANCY : 3.500 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.07400 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 11.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.11 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 3.60 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.22280 REMARK 200 <I/SIGMA(I)> FOR SHELL : 4.700 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 2JH1 REMARK 200 REMARK 200 REMARK: NULL
REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 64.47 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.46 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 3.6M AMMONIUM ACETATE, 100MM BIS/TRIS- REMARK 280 PROPANE, PH 7.6, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 290K
REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+3/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+3/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 86.09400 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 33.11300 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 33.11300 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 129.14100 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 33.11300 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 33.11300 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 43.04700 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 33.11300 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 33.11300 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 129.14100 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 33.11300 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 33.11300 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 43.04700 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 86.09400 REMARK 290 REMARK 290 REMARK: NULL
REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA.
REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000
REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A1075 LIES ON A SPECIAL POSITION. REMARK 375 HOH A1159 LIES ON A SPECIAL POSITION. REMARK 375 HOH A1189 LIES ON A SPECIAL POSITION.
REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 VAL A 1 REMARK 465 GLY A 2 REMARK 465 PRO A 3 REMARK 465 GLU A 4 REMARK 465 ALA A 5 REMARK 465 TYR A 6 REMARK 465 GLY A 7 REMARK 465 GLU A 8 REMARK 465 ALA A 9 REMARK 465 SER A 10 REMARK 465 HIS A 11 REMARK 465 SER A 12 REMARK 465 GLN A 80 REMARK 465 GLU A 81 REMARK 465 ASN A 82 REMARK 465 SER A 244 REMARK 465 ARG A 245 REMARK 465 THR A 246
REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 HIS A 13 CG ND1 CD2 CE1 NE2 REMARK 470 GLU A 77 CG CD OE1 OE2 REMARK 470 SER A 78 OG REMARK 470 ASN A 79 CG OD1 REMARK 470 GLU A 207 CG CD OE1 OE2 REMARK 470 GLU A 222 CD OE1 OE2 REMARK 470 ILE A 243 CG1 CG2 CD1
REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 HIS A 61 -16.00 79.33 REMARK 500 REMARK 500 REMARK: NULL
REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A1183 DISTANCE = 5.05 ANGSTROMS
REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 NAG A 403
REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SIA A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GAL A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NAG A 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT A 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT A 503 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT A 504 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT A 505 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT A 506 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT A 507 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT A 508 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 601 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 602 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 603 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 604 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 605
REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2JH1 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF TOXOPLASMA GONDII MICRONEMAL PROTEIN 1 REMARK 900 RELATED ID: 2JHD RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF TOXOPLASMA GONDII MICRONEMAL PROTEIN 1 REMARK 900 BOUND TO 3'-SIALYL-N-ACETYLLACTOSAMINE REMARK 900 RELATED ID: 2JH7 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF TOXOPLASMA GONDII MICRONEMAL PROTEIN 1 REMARK 900 BOUND TO 6'-SIALYL-N-ACETYLLACTOSAMINE REMARK 900 RELATED ID: 3F53 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF TOXOPLASMA GONDII MICRONEMAL PROTEIN 1 REMARK 900 BOUND TO 2F-3'SIALACNAC REMARK 900 RELATED ID: 3F5E RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF TOXOPLASMA GONDII MICRONEMAL PROTEIN 1 REMARK 900 BOUND TO 2'F-3'SIALACNAC1-3
DBREF 3F5A A 1 246 UNP O00834 MIC1_TOXGO 17 262
SEQRES 1 A 246 VAL GLY PRO GLU ALA TYR GLY GLU ALA SER HIS SER HIS SEQRES 2 A 246 SER PRO ALA SER GLY ARG TYR ILE GLN GLN MSE LEU ASP SEQRES 3 A 246 GLN ARG CYS GLN GLU ILE ALA ALA GLU LEU CYS GLN SER SEQRES 4 A 246 GLY LEU ARG LYS MSE CYS VAL PRO SER SER ARG ILE VAL SEQRES 5 A 246 ALA ARG ASN ALA VAL GLY ILE THR HIS GLN ASN THR LEU SEQRES 6 A 246 GLN TRP ARG CYS PHE ASP THR ALA SER LEU LEU GLU SER SEQRES 7 A 246 ASN GLN GLU ASN ASN GLY VAL ASN CYS VAL ASP ASP CYS SEQRES 8 A 246 GLY HIS THR ILE PRO CYS PRO GLY GLY VAL HIS ARG GLN SEQRES 9 A 246 ASN SER ASN HIS ALA THR ARG HIS GLU ILE LEU SER LYS SEQRES 10 A 246 LEU VAL GLU GLU GLY VAL GLN ARG PHE CYS SER PRO TYR SEQRES 11 A 246 GLN ALA SER ALA ASN LYS TYR CYS ASN ASP LYS PHE PRO SEQRES 12 A 246 GLY THR ILE ALA ARG ARG SER LYS GLY PHE GLY ASN ASN SEQRES 13 A 246 VAL GLU VAL ALA TRP ARG CYS TYR GLU LYS ALA SER LEU SEQRES 14 A 246 LEU TYR SER VAL TYR ALA GLU CYS ALA SER ASN CYS GLY SEQRES 15 A 246 THR THR TRP TYR CYS PRO GLY GLY ARG ARG GLY THR SER SEQRES 16 A 246 THR GLU LEU ASP LYS ARG HIS TYR THR GLU GLU GLU GLY SEQRES 17 A 246 ILE ARG GLN ALA ILE GLY SER VAL ASP SER PRO CYS SER SEQRES 18 A 246 GLU VAL GLU VAL CYS LEU PRO LYS ASP GLU ASN PRO PRO SEQRES 19 A 246 LEU CYS LEU ASP GLU SER GLY GLN ILE SER ARG THR
MODRES 3F5A MSE A 24 MET SELENOMETHIONINE MODRES 3F5A MSE A 44 MET SELENOMETHIONINE
HET MSE A 24 8 HET MSE A 44 8 HET CL A 301 1 HET SIA A 401 21 HET GAL A 402 11 HET NAG A 403 14 HET ACT A 501 4 HET ACT A 502 4 HET ACT A 503 4 HET ACT A 504 4 HET ACT A 505 4 HET ACT A 506 4 HET ACT A 507 4 HET ACT A 508 4 HET GOL A 601 6 HET GOL A 602 6 HET GOL A 603 6 HET GOL A 604 6 HET GOL A 605 6
HETNAM MSE SELENOMETHIONINE HETNAM CL CHLORIDE ION HETNAM SIA O-SIALIC ACID HETNAM GAL BETA-D-GALACTOSE HETNAM NAG N-ACETYL-D-GLUCOSAMINE HETNAM ACT ACETATE ION HETNAM GOL GLYCEROL
HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL
FORMUL 1 MSE 2(C5 H11 N O2 SE) FORMUL 2 CL CL 1- FORMUL 3 SIA C11 H19 N O9 FORMUL 3 GAL C6 H12 O6 FORMUL 3 NAG C8 H15 N O6 FORMUL 4 ACT 8(C2 H3 O2 1-) FORMUL 12 GOL 5(C3 H8 O3) FORMUL 17 HOH *189(H2 O)
HELIX 1 1 ARG A 19 SER A 39 1 21 HELIX 2 2 LEU A 41 CYS A 45 5 5 HELIX 3 3 PRO A 47 SER A 49 5 3 HELIX 4 4 ALA A 73 LEU A 75 5 3 HELIX 5 5 ARG A 111 CYS A 127 1 17 HELIX 6 6 SER A 128 PHE A 142 1 15 HELIX 7 7 ALA A 167 LEU A 169 5 3 HELIX 8 8 THR A 196 LYS A 200 5 5 HELIX 9 9 GLU A 205 SER A 215 1 11
SHEET 1 A 3 ILE A 51 ALA A 56 0 SHEET 2 A 3 GLN A 66 ASP A 71 -1 O PHE A 70 N VAL A 52 SHEET 3 A 3 HIS A 108 THR A 110 -1 O ALA A 109 N CYS A 69 SHEET 1 B 2 GLY A 84 VAL A 88 0 SHEET 2 B 2 THR A 94 GLY A 100 -1 O ILE A 95 N CYS A 87 SHEET 1 C 3 THR A 145 GLY A 152 0 SHEET 2 C 3 ASN A 155 GLU A 165 -1 O TYR A 164 N ILE A 146 SHEET 3 C 3 HIS A 202 THR A 204 -1 O TYR A 203 N CYS A 163 SHEET 1 D 2 LEU A 170 ALA A 178 0 SHEET 2 D 2 THR A 184 GLY A 190 -1 O CYS A 187 N ALA A 175 SHEET 1 E 2 GLU A 224 LEU A 227 0 SHEET 2 E 2 LEU A 235 ASP A 238 -1 O LEU A 235 N LEU A 227
SSBOND 1 CYS A 29 CYS A 69 1555 1555 2.06 SSBOND 2 CYS A 37 CYS A 45 1555 1555 2.05 SSBOND 3 CYS A 87 CYS A 97 1555 1555 2.04 SSBOND 4 CYS A 91 CYS A 127 1555 1555 2.04 SSBOND 5 CYS A 138 CYS A 163 1555 1555 2.05 SSBOND 6 CYS A 177 CYS A 187 1555 1555 2.06 SSBOND 7 CYS A 181 CYS A 226 1555 1555 2.04 SSBOND 8 CYS A 220 CYS A 236 1555 1555 2.03
LINK C GLN A 23 N MSE A 24 1555 1555 1.34 LINK C MSE A 24 N LEU A 25 1555 1555 1.33 LINK C LYS A 43 N MSE A 44 1555 1555 1.34 LINK C MSE A 44 N CYS A 45 1555 1555 1.33 LINK O2 SIA A 401 C3 GAL A 402 1555 1555 1.45 LINK O1 GAL A 402 C3 NAG A 403 1555 1555 1.34
CISPEP 1 ASN A 232 PRO A 233 0 -4.28
SITE 1 AC1 5 SER A 17 ASP A 89 ASP A 90 CYS A 187 SITE 2 AC1 5 GOL A 601 SITE 1 AC2 8 LYS A 200 HIS A 202 TYR A 203 THR A 204 SITE 2 AC2 8 GLN A 242 GAL A 402 HOH A1145 HOH A1170 SITE 1 AC3 4 GLN A 242 SIA A 401 NAG A 403 HOH A1170 SITE 1 AC4 3 HIS A 102 ASN A 105 GAL A 402 SITE 1 AC5 3 ASN A 86 THR A 94 LYS A 166 SITE 1 AC6 4 MSE A 24 ARG A 28 HOH A1043 HOH A1178 SITE 1 AC7 7 PRO A 47 SER A 48 SER A 49 ACT A 507 SITE 2 AC7 7 HOH A1133 HOH A1151 HOH A1155 SITE 1 AC8 6 GLN A 62 HIS A 108 ALA A 109 THR A 110 SITE 2 AC8 6 ARG A 111 ACT A 506 SITE 1 AC9 6 PRO A 96 CYS A 97 PRO A 98 LEU A 170 SITE 2 AC9 6 TYR A 171 SER A 172 SITE 1 BC1 5 LYS A 43 SER A 106 ASN A 107 HIS A 108 SITE 2 BC1 5 ACT A 504 SITE 1 BC2 9 PRO A 47 SER A 48 TRP A 161 GLU A 176 SITE 2 BC2 9 CYS A 177 GLY A 182 THR A 183 THR A 184 SITE 3 BC2 9 ACT A 503 SITE 1 BC3 3 ARG A 19 HOH A1002 HOH A1165 SITE 1 BC4 10 SER A 17 ASP A 90 PHE A 126 SER A 128 SITE 2 BC4 10 TRP A 185 CYS A 187 ASP A 230 CL A 301 SITE 3 BC4 10 HOH A1147 HOH A1148 SITE 1 BC5 8 TYR A 20 ASN A 155 ASN A 156 ASP A 230 SITE 2 BC5 8 GLU A 231 ILE A 243 HOH A1149 HOH A1150 SITE 1 BC6 5 PRO A 15 ALA A 16 GLU A 31 GLU A 35 SITE 2 BC6 5 HOH A1152 SITE 1 BC7 7 HIS A 93 THR A 94 ASN A 139 GLY A 144 SITE 2 BC7 7 ILE A 146 LYS A 166 HOH A1097 SITE 1 BC8 7 CYS A 91 GLY A 92 VAL A 119 GLU A 120 SITE 2 BC8 7 HOH A1033 HOH A1064 HOH A1082
CRYST1 66.226 66.226 172.188 90.00 90.00 90.00 P 43 21 2 8
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 0.015100 0.000000 0.000000 0.00000
SCALE2 0.000000 0.015100 0.000000 0.00000
SCALE3 0.000000 0.000000 0.005808 0.00000