10 20 30 40 50 60 70 80 3EZA - Header ----|----|----|----|----|----|----|----|----|----|----|----|----|----|----|----| Asymmetric UnitHEADER COMPLEX (TRANSFERASE/PHOSPHOCARRIER) 03-NOV-98 3EZA
TITLE COMPLEX OF THE AMINO TERMINAL DOMAIN OF ENZYME I AND THE TITLE 2 HISTIDINE-CONTAINING PHOSPHOCARRIER PROTEIN HPR FROM TITLE 3 ESCHERICHIA COLI NMR, RESTRAINED REGULARIZED MEAN STRUCTURE
COMPND MOL_ID: 1; COMPND 2 MOLECULE: PHOSPHOTRANSFERASE SYSTEM, ENZYME I; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: AMINO-TERMINAL DOMAIN RESIDUES 1 - 249; COMPND 5 EC: 2.7.3.9; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: HISTIDINE-CONTAINING PHOSPHOCARRIER PROTEIN HPR; COMPND 9 CHAIN: B; COMPND 10 ENGINEERED: YES
SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 3 ORGANISM_TAXID: 562; SOURCE 4 STRAIN: GI698; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_PLASMID: PLP2; SOURCE 8 MOL_ID: 2; SOURCE 9 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 10 ORGANISM_TAXID: 562; SOURCE 11 STRAIN: GI698; SOURCE 12 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 13 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 14 EXPRESSION_SYSTEM_PLASMID: PSP100
KEYWDS PHOSPHOTRANSFERASE, TRANSFERASE, KINASE, SUGAR TRANSPORT, KEYWDS 2 COMPLEX (TRANSFERASE/PHOSPHOCARRIER)
EXPDTA SOLUTION NMR
AUTHOR G.M.CLORE,D.S.GARRETT,A.M.GRONENBORN
REVDAT 2 24-FEB-09 3EZA 1 VERSN REVDAT 1 25-MAY-99 3EZA 0
JRNL AUTH D.S.GARRETT,Y.J.SEOK,A.PETERKOFSKY,A.M.GRONENBORN, JRNL AUTH 2 G.M.CLORE JRNL TITL SOLUTION STRUCTURE OF THE 40,000 MR PHOSPHORYL JRNL TITL 2 TRANSFER COMPLEX BETWEEN THE N-TERMINAL DOMAIN OF JRNL TITL 3 ENZYME I AND HPR. JRNL REF NAT.STRUCT.BIOL. V. 6 166 1999 JRNL REFN ISSN 1072-8368 JRNL PMID 10048929 JRNL DOI 10.1038/5854
REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH D.S.GARRETT,Y.J.SEOK,A.PETERKOFSKY,G.M.CLORE, REMARK 1 AUTH 2 A.M.GRONENBORN REMARK 1 TITL TAUTOMERIC STATE AND PKA OF THE PHOSPHORYLATED REMARK 1 TITL 2 ACTIVE SITE HISTIDINE IN THE N-TERMINAL DOMAIN OF REMARK 1 TITL 3 ENZYME I OF THE ESCHERICHIA COLI REMARK 1 TITL 4 PHOSPHOENOLPYRUVATE:SUGAR PHOSPHOTRANSFERASE SYSTEM REMARK 1 REF PROTEIN SCI. V. 7 789 1998 REMARK 1 REFN ISSN 0961-8368 REMARK 1 REFERENCE 2 REMARK 1 AUTH D.S.GARRETT,Y.J.SEOK,D.I.LIAO,A.PETERKOFSKY, REMARK 1 AUTH 2 A.M.GRONENBORN,G.M.CLORE REMARK 1 TITL SOLUTION STRUCTURE OF THE 30 KDA N-TERMINAL DOMAIN REMARK 1 TITL 2 OF ENZYME I OF THE ESCHERICHIA COLI REMARK 1 TITL 3 PHOSPHOENOLPYRUVATE:SUGAR PHOSPHOTRANSFERASE REMARK 1 TITL 4 SYSTEM BY MULTIDIMENSIONAL NMR REMARK 1 REF BIOCHEMISTRY V. 36 2517 1997 REMARK 1 REFN ISSN 0006-2960 REMARK 1 REFERENCE 3 REMARK 1 AUTH D.S.GARRETT,Y.J.SEOK,A.PETERKOFSKY,G.M.CLORE, REMARK 1 AUTH 2 A.M.GRONENBORN REMARK 1 TITL IDENTIFICATION BY NMR OF THE BINDING SURFACE FOR REMARK 1 TITL 2 THE HISTIDINE-CONTAINING PHOSPHOCARRIER PROTEIN REMARK 1 TITL 3 HPR ON THE N-TERMINAL DOMAIN OF ENZYME I OF THE REMARK 1 TITL 4 ESCHERICHIA COLI PHOSPHOTRANSFERASE SYSTEM REMARK 1 REF BIOCHEMISTRY V. 36 4393 1997 REMARK 1 REFN ISSN 0006-2960
REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE.
REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS REMARK 3 AUTHORS : BRUNGER, ADAMS, CLORE, DELANO, GROSSE- REMARK 3 KUNSTLEVE,JIANG,KUSZEWSKI,NILGES, PANNU,READ, REMARK 3 RICE,SIMONSON,WARREN REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: REMARK 3 THE STRUCTURES WERE CALCULATED USING THE SIMULATED REMARK 3 ANNEALING PROTOCOL OF NILGES ET AL. (1988) FEBS LETT. 229, REMARK 3 129-136 USING THE PROGRAM CNS MODIFIED TO INCORPORATE REMARK 3 COUPLING CONSTANT RESTRAINTS (GARRETT ET AL. (1984) J. MAGN. REMARK 3 RESON. SERIES B 104, 99-103), CARBON CHEMICAL SHIFT REMARK 3 RESTRAINTS, (KUSZEWSKI ET AL. (1995) J. MAGN. RESON. REMARK 3 SERIES B 106, 92-96) RESTRAINTS, AND RESIDUAL DIPOLAR REMARK 3 COUPLING RESTRAINTS (CLORE ET AL. J. MAGN. RESON 131, REMARK 3 159-162 (1998); J. MAGN 133, 216-221(1998)). REMARK 3 REMARK 3 IN THIS ENTRY THE LAST COLUMN REPRESENTS THE AVERAGE RMS REMARK 3 DIFFERENCE BETWEEN THE INDIVIDUAL SIMULATED ANNEALING REMARK 3 STRUCTURES AND THE MEAN COORDINATE POSITIONS. THE LAST REMARK 3 COLUMN IN THE INDIVIDUAL SA STRUCTURES HAS NO MEANING. REMARK 3 FITTING TO GENERATE THE AVERAGE STRUCTURE IS WITH RESPECT REMARK 3 BEST TO RESIDUES 1 - 250 (RESIDUES 251 - 249 ARE DISORDERED REMARK 3 IN SOLUTION) OF ENZYME I AND RESIDUES 1-85 OF HPR. REMARK 3 RESIDUES 251-249 ARE OMITTED FROM THE MEAN STRUCTURE.
REMARK 4 REMARK 4 3EZA COMPLIES WITH FORMAT V. 3.15, 01-DEC-08
REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY BNL.
REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 313 REMARK 210 PH : 7.0 REMARK 210 IONIC STRENGTH : NULL REMARK 210 PRESSURE : NULL REMARK 210 SAMPLE CONTENTS : NULL REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : NULL REMARK 210 SPECTROMETER FIELD STRENGTH : 500 MHZ, 600 MHZ, 750 MHZ REMARK 210 SPECTROMETER MODEL : DMX500, DMX600, DMX750 REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : CNS (SEE ABOVE) ABOVE) REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 40 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 1 REMARK 210 CONFORMERS, SELECTION CRITERIA : REGULARIZED MEAN STRUCTURE REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : NULL REMARK 210 REMARK 210 REMARK: THE 3D STRUCTURE OF THE EIN-HPR COMPLEX WAS SOLVED BY REMARK 210 MULTI-DIMENSIONAL HETERONUCLEAR NMR AND IS BASED ON 5475 REMARK 210 EXPERIMENTAL NMR RESTRAINTS:' INTRAMOLECULAR EIN NOES: 746 REMARK 210 SEQUENTIAL (|I-J|1), 517 MEDIUM RANGE (1 < |I-J <= 5), 436 REMARK 210 LONG RANGE (|I-J|>5) INTERRESIDUE NOES AND 486 INTRARESIDUE REMARK 210 NOES. INTRAMOLECULAR HPR NOES: 247 SEQUENTIAL (|I-J|1), 167 REMARK 210 MEDIUM RANGE (1 < |I-J <= 5), 246 LONG RANGE (|I-J|>5) REMARK 210 INTERRESIDUE NOES AND 202 INTRARESIDUE NOES. INTERMOLECULAR REMARK 210 NOES BETWEEN EIN AND HPR: 117 TORSION ANGLE RESTRAINTS 768 FOR REMARK 210 EIN AND 170 FOR HPR. 3JHNA COUPLING CONSTANT RESTRAINTS: 34 REMARK 210 FOR HPR 13CALPHA AND 13CBETA CHEMICAL SHIFT RESTRAINTS: 503 REMARK 210 FOR EIN, 162 FOR HPR. ONE-BOND N-H DIPOLAR COUPLING CONSTANT REMARK 210 RESTRAINTS: 165 FOR EIN AND 79 FOR HPR
REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS.
REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 HIS A 97 CB HIS A 97 CG 0.125 REMARK 500 HIS A 97 CG HIS A 97 CD2 0.137 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 HIS A 97 CB - CG - CD2 ANGL. DEV. = 15.3 DEGREES REMARK 500 HIS A 97 ND1 - CG - CD2 ANGL. DEV. = -77.0 DEGREES REMARK 500 HIS A 97 CG - ND1 - CE1 ANGL. DEV. = -69.1 DEGREES REMARK 500 HIS A 97 ND1 - CE1 - NE2 ANGL. DEV. = -74.5 DEGREES REMARK 500 HIS A 97 CE1 - NE2 - CD2 ANGL. DEV. = -65.6 DEGREES REMARK 500 HIS A 97 CG - CD2 - NE2 ANGL. DEV. = -67.3 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 6 103.92 53.36 REMARK 500 LYS A 49 -73.01 -63.80 REMARK 500 ALA A 50 -33.72 -38.50 REMARK 500 ASP A 119 40.60 -98.53 REMARK 500 ASP A 148 113.62 61.63 REMARK 500 ASP A 162 146.57 -170.37 REMARK 500 PRO A 165 -36.48 -39.80 REMARK 500 GLN A 170 36.95 -84.49 REMARK 500 ALA A 183 -163.67 -55.31 REMARK 500 THR A 187 2.99 -65.10 REMARK 500 SER A 207 40.56 -160.78 REMARK 500 ALA A 222 14.44 49.80 REMARK 500 ASN B 38 64.33 39.77 REMARK 500 GLN B 51 -18.24 -41.93 REMARK 500 REMARK 500 REMARK: NULL
REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3EZB RELATED DB: PDB REMARK 900 RELATED ID: 3EZE RELATED DB: PDB
DBREF 3EZA A 1 249 UNP P08839 PT1_ECOLI 1 249 DBREF 3EZA B 1 85 UNP P0AA04 PTHP_ECOLI 1 85
SEQADV 3EZA ILE B 63 UNP P0AA04 LEU 63 CONFLICT
SEQRES 1 A 249 MET ILE SER GLY ILE LEU ALA SER PRO GLY ILE ALA PHE SEQRES 2 A 249 GLY LYS ALA LEU LEU LEU LYS GLU ASP GLU ILE VAL ILE SEQRES 3 A 249 ASP ARG LYS LYS ILE SER ALA ASP GLN VAL ASP GLN GLU SEQRES 4 A 249 VAL GLU ARG PHE LEU SER GLY ARG ALA LYS ALA SER ALA SEQRES 5 A 249 GLN LEU GLU THR ILE LYS THR LYS ALA GLY GLU THR PHE SEQRES 6 A 249 GLY GLU GLU LYS GLU ALA ILE PHE GLU GLY HIS ILE MET SEQRES 7 A 249 LEU LEU GLU ASP GLU GLU LEU GLU GLN GLU ILE ILE ALA SEQRES 8 A 249 LEU ILE LYS ASP LYS HIS MET THR ALA ASP ALA ALA ALA SEQRES 9 A 249 HIS GLU VAL ILE GLU GLY GLN ALA SER ALA LEU GLU GLU SEQRES 10 A 249 LEU ASP ASP GLU TYR LEU LYS GLU ARG ALA ALA ASP VAL SEQRES 11 A 249 ARG ASP ILE GLY LYS ARG LEU LEU ARG ASN ILE LEU GLY SEQRES 12 A 249 LEU LYS ILE ILE ASP LEU SER ALA ILE GLN ASP GLU VAL SEQRES 13 A 249 ILE LEU VAL ALA ALA ASP LEU THR PRO SER GLU THR ALA SEQRES 14 A 249 GLN LEU ASN LEU LYS LYS VAL LEU GLY PHE ILE THR ASP SEQRES 15 A 249 ALA GLY GLY ARG THR SER HIS THR SER ILE MET ALA ARG SEQRES 16 A 249 SER LEU GLU LEU PRO ALA ILE VAL GLY THR GLY SER VAL SEQRES 17 A 249 THR SER GLN VAL LYS ASN ASP ASP TYR LEU ILE LEU ASP SEQRES 18 A 249 ALA VAL ASN ASN GLN VAL TYR VAL ASN PRO THR ASN GLU SEQRES 19 A 249 VAL ILE ASP LYS MET ARG ALA VAL GLN GLU GLN VAL ALA SEQRES 20 A 249 SER GLU SEQRES 1 B 85 MET PHE GLN GLN GLU VAL THR ILE THR ALA PRO ASN GLY SEQRES 2 B 85 LEU HIS THR ARG PRO ALA ALA GLN PHE VAL LYS GLU ALA SEQRES 3 B 85 LYS GLY PHE THR SER GLU ILE THR VAL THR SER ASN GLY SEQRES 4 B 85 LYS SER ALA SER ALA LYS SER LEU PHE LYS LEU GLN THR SEQRES 5 B 85 LEU GLY LEU THR GLN GLY THR VAL VAL THR ILE SER ALA SEQRES 6 B 85 GLU GLY GLU ASP GLU GLN LYS ALA VAL GLU HIS LEU VAL SEQRES 7 B 85 LYS LEU MET ALA GLU LEU GLU
HELIX 1 1 ALA A 33 THR A 64 1 32 HELIX 2 2 GLU A 67 LEU A 80 1 14 HELIX 3 3 GLU A 83 LYS A 96 1 14 HELIX 4 4 ALA A 100 GLU A 116 1 17 HELIX 5 5 GLU A 121 LEU A 142 1 22 HELIX 6 6 PRO A 165 ALA A 169 1 5 HELIX 7 7 HIS A 189 LEU A 197 1 9 HELIX 8 8 ASN A 233 ALA A 247 1 15 HELIX 9 9 THR B 16 GLY B 28 1 13 HELIX 10 10 LEU B 47 THR B 52 1 6 HELIX 11 11 GLU B 70 GLU B 83 1 14
SHEET 1 A 5 PHE A 179 THR A 181 0 SHEET 2 A 5 ILE A 157 ALA A 160 1 N LEU A 158 O ILE A 180 SHEET 3 A 5 ALA A 12 LEU A 18 1 N LEU A 17 O ILE A 157 SHEET 4 A 5 ASP A 216 LEU A 220 -1 N LEU A 220 O ALA A 12 SHEET 5 A 5 VAL A 227 VAL A 229 -1 N TYR A 228 O ILE A 219 SHEET 1 B 4 PHE B 2 THR B 7 0 SHEET 2 B 4 VAL B 60 GLU B 66 -1 N ALA B 65 O PHE B 2 SHEET 3 B 4 GLU B 32 SER B 37 -1 N THR B 36 O THR B 62 SHEET 4 B 4 LYS B 40 SER B 43 -1 N ALA B 42 O VAL B 35
CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 1.000000 0.000000 0.000000 0.00000
SCALE2 0.000000 1.000000 0.000000 0.00000
SCALE3 0.000000 0.000000 1.000000 0.00000