10 20 30 40 50 60 70 80 3E7W - Header ----|----|----|----|----|----|----|----|----|----|----|----|----|----|----|----| Asymmetric UnitHEADER LIGASE 19-AUG-08 3E7W
TITLE CRYSTAL STRUCTURE OF DLTA: IMPLICATIONS FOR THE REACTION TITLE 2 MECHANISM OF NON-RIBOSOMAL PEPTIDE SYNTHETASE (NRPS) TITLE 3 ADENYLATION DOMAINS
COMPND MOL_ID: 1; COMPND 2 MOLECULE: D-ALANINE--POLY(PHOSPHORIBITOL) LIGASE SUBUNIT 1; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: DLTA PROTEIN, D-ALANINE-ACTIVATING ENZYME, DAE, D- COMPND 5 ALANINE-D-ALANYL CARRIER PROTEIN LIGASE, DCL; COMPND 6 EC: 6.1.1.13; COMPND 7 ENGINEERED: YES
SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BACILLUS SUBTILIS; SOURCE 3 ORGANISM_TAXID: 1423; SOURCE 4 GENE: DLTA; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: M15; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PQE60
KEYWDS DLTA, NON-RIBOSOMAL PEPTIDE SYNTHETASE, NRPS, ADENYLATION KEYWDS 2 DOMAIN, D-ALANYLATION, D-ALANINE-DALANYL, AMP, CYTOPLASM, KEYWDS 3 LIGASE
EXPDTA X-RAY DIFFRACTION
AUTHOR H.YONUS,P.NEUMANN,S.ZIMMERMANN,J.J.MAY,M.A.MARAHIEL, AUTHOR 2 M.T.STUBBS
REVDAT 2 30-DEC-08 3E7W 1 JRNL VERSN REVDAT 1 09-SEP-08 3E7W 0
JRNL AUTH H.YONUS,P.NEUMANN,S.ZIMMERMANN,J.J.MAY, JRNL AUTH 2 M.A.MARAHIEL,M.T.STUBBS JRNL TITL CRYSTAL STRUCTURE OF DLTA. IMPLICATIONS FOR THE JRNL TITL 2 REACTION MECHANISM OF NON-RIBOSOMAL PEPTIDE JRNL TITL 3 SYNTHETASE ADENYLATION DOMAINS JRNL REF J.BIOL.CHEM. V. 283 32484 2008 JRNL REFN ISSN 0021-9258 JRNL PMID 18784082 JRNL DOI 10.1074/JBC.M800557200
REMARK 1
REMARK 2 REMARK 2 RESOLUTION. 2.28 ANGSTROMS.
REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.1 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES, PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.28 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.92 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 4358166.000 REMARK 3 DATA CUTOFF LOW (ABS(F)) : 0.0000 REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 96.2 REMARK 3 NUMBER OF REFLECTIONS : 25261 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.205 REMARK 3 FREE R VALUE : 0.256 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.900 REMARK 3 FREE R VALUE TEST SET COUNT : 1503 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.007 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 30 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.28 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.31 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 58.60 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 460 REMARK 3 BIN R VALUE (WORKING SET) : 0.3060 REMARK 3 BIN FREE R VALUE : 0.3220 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 7.30 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 36 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.054 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4055 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 28 REMARK 3 SOLVENT ATOMS : 367 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 38.78 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 41.12 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 22.36000 REMARK 3 B22 (A**2) : -7.42000 REMARK 3 B33 (A**2) : -14.94000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.29 REMARK 3 ESD FROM SIGMAA (A) : 0.37 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.36 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.43 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.006 REMARK 3 BOND ANGLES (DEGREES) : 1.30 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 23.40 REMARK 3 IMPROPER ANGLES (DEGREES) : 0.92 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : FLAT MODEL REMARK 3 KSOL : 0.32 REMARK 3 BSOL : 44.72 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : WATER_REP.PARAM REMARK 3 PARAMETER FILE 3 : AMP.PARAM REMARK 3 PARAMETER FILE 4 : ION.PARAM REMARK 3 PARAMETER FILE 5 : NULL REMARK 3 TOPOLOGY FILE 1 : PROTEIN.TOP REMARK 3 TOPOLOGY FILE 2 : AMP.TOP REMARK 3 TOPOLOGY FILE 3 : ION.TOP REMARK 3 TOPOLOGY FILE 4 : NULL REMARK 3 TOPOLOGY FILE 5 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL
REMARK 4 REMARK 4 3E7W COMPLIES WITH FORMAT V. 3.15, 01-DEC-08
REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 26-AUG-08. REMARK 100 THE RCSB ID CODE IS RCSB048986.
REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-APR-04 REMARK 200 TEMPERATURE (KELVIN) : 180 REMARK 200 PH : 6.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : EMBL/DESY, HAMBURG REMARK 200 BEAMLINE : BW7A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9123 REMARK 200 MONOCHROMATOR : GRAPHITE REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MAR CCD 165 MM REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 25439 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.280 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.2 REMARK 200 DATA REDUNDANCY : 2.890 REMARK 200 R MERGE (I) : 0.06100 REMARK 200 R SYM (I) : 0.07500 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 13.9200 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.28 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.40 REMARK 200 COMPLETENESS FOR SHELL (%) : 90.4 REMARK 200 DATA REDUNDANCY IN SHELL : 2.73 REMARK 200 R MERGE FOR SHELL (I) : 0.28400 REMARK 200 R SYM FOR SHELL (I) : 0.35000 REMARK 200 <I/SIGMA(I)> FOR SHELL : 3.900 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: SHELXD REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL
REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 50.86 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.50 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M SODIUM CITRATE, 0.2M AMMONIUM REMARK 280 ACETATE, 20% PEG 4000, PH 6.0, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 298K
REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 2 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X,Y,-Z REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z+1/2 REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 45.28200 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 47.49500 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 66.27350 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 45.28200 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 47.49500 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 66.27350 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 45.28200 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 47.49500 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 66.27350 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 45.28200 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 47.49500 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 66.27350 REMARK 290 REMARK 290 REMARK: NULL
REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA.
REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000
REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 HIS A 509 REMARK 465 HIS A 510 REMARK 465 HIS A 511
REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OD1 ASN A 157 O HOH A 628 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 2 150.13 -48.85 REMARK 500 TYR A 14 67.66 -117.97 REMARK 500 HIS A 60 -93.58 -126.40 REMARK 500 LEU A 109 102.88 -33.09 REMARK 500 GLU A 128 5.32 -66.11 REMARK 500 GLU A 142 -123.70 50.73 REMARK 500 PRO A 180 47.61 -70.36 REMARK 500 THR A 299 71.52 53.02 REMARK 500 VAL A 300 -83.55 72.77 REMARK 500 VAL A 305 120.08 -175.04 REMARK 500 PRO A 325 -55.69 -29.22 REMARK 500 PRO A 352 -7.66 -57.52 REMARK 500 HIS A 372 -94.27 -70.87 REMARK 500 GLN A 375 147.60 -38.34 REMARK 500 ASP A 398 -149.54 -103.16 REMARK 500 ASN A 434 -125.72 -110.77 REMARK 500 GLU A 448 129.04 171.12 REMARK 500 REMARK 500 REMARK: NULL
REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 871 DISTANCE = 9.65 ANGSTROMS
REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 A 512 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE AMP A 513
REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1AMU RELATED DB: PDB REMARK 900 RELATED ID: 1MD9 RELATED DB: PDB REMARK 900 RELATED ID: 2DLS RELATED DB: PDB REMARK 900 RELATED ID: 1BA3 RELATED DB: PDB REMARK 900 RELATED ID: 1PG4 RELATED DB: PDB REMARK 900 RELATED ID: 1HQB RELATED DB: PDB
DBREF 3E7W A 1 503 UNP P39581 DLTA_BACSU 1 503
SEQADV 3E7W ARG A 504 UNP P39581 EXPRESSION TAG SEQADV 3E7W SER A 505 UNP P39581 EXPRESSION TAG SEQADV 3E7W HIS A 506 UNP P39581 EXPRESSION TAG SEQADV 3E7W HIS A 507 UNP P39581 EXPRESSION TAG SEQADV 3E7W HIS A 508 UNP P39581 EXPRESSION TAG SEQADV 3E7W HIS A 509 UNP P39581 EXPRESSION TAG SEQADV 3E7W HIS A 510 UNP P39581 EXPRESSION TAG SEQADV 3E7W HIS A 511 UNP P39581 EXPRESSION TAG
SEQRES 1 A 511 MET LYS LEU LEU HIS ALA ILE GLN THR HIS ALA GLU THR SEQRES 2 A 511 TYR PRO GLN THR ASP ALA PHE ARG SER GLN GLY GLN SER SEQRES 3 A 511 LEU THR TYR GLN GLU LEU TRP GLU GLN SER ASP ARG ALA SEQRES 4 A 511 ALA ALA ALA ILE GLN LYS ARG ILE SER GLY GLU LYS LYS SEQRES 5 A 511 SER PRO ILE LEU VAL TYR GLY HIS MET GLU PRO HIS MET SEQRES 6 A 511 ILE VAL SER PHE LEU GLY SER VAL LYS ALA GLY HIS PRO SEQRES 7 A 511 TYR ILE PRO VAL ASP LEU SER ILE PRO SER GLU ARG ILE SEQRES 8 A 511 ALA LYS ILE ILE GLU SER SER GLY ALA GLU LEU LEU ILE SEQRES 9 A 511 HIS ALA ALA GLY LEU SER ILE ASP ALA VAL GLY GLN GLN SEQRES 10 A 511 ILE GLN THR VAL SER ALA GLU GLU LEU LEU GLU ASN GLU SEQRES 11 A 511 GLY GLY SER VAL SER GLN ASP GLN TRP VAL LYS GLU HIS SEQRES 12 A 511 GLU THR PHE TYR ILE ILE TYR THR SER GLY SER THR GLY SEQRES 13 A 511 ASN PRO LYS GLY VAL GLN ILE SER ALA ALA ASN LEU GLN SEQRES 14 A 511 SER PHE THR ASP TRP ILE CYS ALA ASP PHE PRO VAL SER SEQRES 15 A 511 GLY GLY LYS ILE PHE LEU ASN GLN ALA PRO PHE SER PHE SEQRES 16 A 511 ASP LEU SER VAL MET ASP LEU TYR PRO CYS LEU GLN SER SEQRES 17 A 511 GLY GLY THR LEU HIS CYS VAL THR LYS ASP ALA VAL ASN SEQRES 18 A 511 LYS PRO LYS VAL LEU PHE GLU GLU LEU LYS LYS SER GLY SEQRES 19 A 511 LEU ASN VAL TRP THR SER THR PRO SER PHE VAL GLN MET SEQRES 20 A 511 CYS LEU MET ASP PRO GLY PHE SER GLN ASP LEU LEU PRO SEQRES 21 A 511 HIS ALA ASP THR PHE MET PHE CYS GLY GLU VAL LEU PRO SEQRES 22 A 511 VAL SER VAL ALA LYS ALA LEU LEU GLU ARG PHE PRO LYS SEQRES 23 A 511 ALA LYS ILE PHE ASN THR TYR GLY PRO THR GLU ALA THR SEQRES 24 A 511 VAL ALA VAL THR SER VAL GLU ILE THR ASN ASP VAL ILE SEQRES 25 A 511 SER ARG SER GLU SER LEU PRO VAL GLY PHE ALA LYS PRO SEQRES 26 A 511 ASP MET ASN ILE PHE ILE MET ASP GLU GLU GLY GLN PRO SEQRES 27 A 511 LEU PRO GLU GLY GLU LYS GLY GLU ILE VAL ILE ALA GLY SEQRES 28 A 511 PRO SER VAL SER ARG GLY TYR LEU GLY GLU PRO GLU LEU SEQRES 29 A 511 THR GLU LYS ALA PHE PHE SER HIS GLU GLY GLN TRP ALA SEQRES 30 A 511 TYR ARG THR GLY ASP ALA GLY PHE ILE GLN ASP GLY GLN SEQRES 31 A 511 ILE PHE CYS GLN GLY ARG LEU ASP PHE GLN ILE LYS LEU SEQRES 32 A 511 HIS GLY TYR ARG MET GLU LEU GLU GLU ILE GLU PHE HIS SEQRES 33 A 511 VAL ARG GLN SER GLN TYR VAL ARG SER ALA VAL VAL ILE SEQRES 34 A 511 PRO TYR GLN PRO ASN GLY THR VAL GLU TYR LEU ILE ALA SEQRES 35 A 511 ALA ILE VAL PRO GLU GLU HIS GLU PHE GLU LYS GLU PHE SEQRES 36 A 511 GLN LEU THR SER ALA ILE LYS LYS GLU LEU ALA ALA SER SEQRES 37 A 511 LEU PRO ALA TYR MET ILE PRO ARG LYS PHE ILE TYR GLN SEQRES 38 A 511 ASP HIS ILE GLN MET THR ALA ASN GLY LYS ILE ASP ARG SEQRES 39 A 511 LYS ARG ILE GLY GLU GLU VAL LEU VAL ARG SER HIS HIS SEQRES 40 A 511 HIS HIS HIS HIS
HET PO4 A 512 5 HET AMP A 513 23
HETNAM PO4 PHOSPHATE ION HETNAM AMP ADENOSINE MONOPHOSPHATE
FORMUL 2 PO4 O4 P 3- FORMUL 3 AMP C10 H14 N5 O7 P FORMUL 4 HOH *367(H2 O)
HELIX 1 1 LYS A 2 TYR A 14 1 13 HELIX 2 2 TYR A 29 GLN A 44 1 16 HELIX 3 3 GLU A 62 GLY A 76 1 15 HELIX 4 4 PRO A 87 GLY A 99 1 13 HELIX 5 5 ALA A 123 GLU A 128 1 6 HELIX 6 6 SER A 135 TRP A 139 5 5 HELIX 7 7 ALA A 165 PHE A 179 1 15 HELIX 8 8 ASP A 196 SER A 208 1 13 HELIX 9 9 THR A 216 LYS A 222 1 7 HELIX 10 10 LYS A 222 GLY A 234 1 13 HELIX 11 11 THR A 241 MET A 250 1 10 HELIX 12 12 PRO A 273 PHE A 284 1 12 HELIX 13 13 PRO A 295 THR A 299 5 5 HELIX 14 14 THR A 308 SER A 313 1 6 HELIX 15 15 GLU A 361 ALA A 368 1 8 HELIX 16 16 LEU A 410 SER A 420 1 11 HELIX 17 17 LYS A 453 LEU A 469 1 17 HELIX 18 18 PRO A 470 ILE A 474 5 5 HELIX 19 19 ASP A 493 HIS A 506 1 14
SHEET 1 A 4 GLN A 25 THR A 28 0 SHEET 2 A 4 ASP A 18 SER A 22 -1 N ALA A 19 O LEU A 27 SHEET 3 A 4 THR A 211 CYS A 214 1 O LEU A 212 N ALA A 19 SHEET 4 A 4 ILE A 186 ASN A 189 1 N PHE A 187 O HIS A 213 SHEET 1 B 4 TYR A 79 ASP A 83 0 SHEET 2 B 4 ILE A 55 GLY A 59 1 N VAL A 57 O VAL A 82 SHEET 3 B 4 LEU A 102 HIS A 105 1 O ILE A 104 N TYR A 58 SHEET 4 B 4 THR A 120 SER A 122 1 O VAL A 121 N LEU A 103 SHEET 1 C 2 THR A 145 THR A 151 0 SHEET 2 C 2 LYS A 159 SER A 164 -1 O ILE A 163 N TYR A 147 SHEET 1 D 5 VAL A 237 SER A 240 0 SHEET 2 D 5 THR A 264 PHE A 267 1 O MET A 266 N TRP A 238 SHEET 3 D 5 LYS A 288 ASN A 291 1 O LYS A 288 N PHE A 265 SHEET 4 D 5 THR A 303 ILE A 307 -1 O ILE A 307 N ILE A 289 SHEET 5 D 5 PHE A 322 ALA A 323 -1 O PHE A 322 N SER A 304 SHEET 1 E 4 ASN A 328 MET A 332 0 SHEET 2 E 4 GLY A 345 ALA A 350 -1 O ALA A 350 N ASN A 328 SHEET 3 E 4 TRP A 376 GLN A 387 -1 O ASP A 382 N ILE A 347 SHEET 4 E 4 PHE A 369 SER A 371 -1 N PHE A 370 O ALA A 377 SHEET 1 F 4 ASN A 328 MET A 332 0 SHEET 2 F 4 GLY A 345 ALA A 350 -1 O ALA A 350 N ASN A 328 SHEET 3 F 4 TRP A 376 GLN A 387 -1 O ASP A 382 N ILE A 347 SHEET 4 F 4 GLN A 390 ARG A 396 -1 O GLY A 395 N ALA A 383 SHEET 1 G 2 GLN A 400 LEU A 403 0 SHEET 2 G 2 TYR A 406 GLU A 409 -1 O MET A 408 N ILE A 401 SHEET 1 H 3 VAL A 423 TYR A 431 0 SHEET 2 H 3 TYR A 439 PRO A 446 -1 O ILE A 441 N ILE A 429 SHEET 3 H 3 LYS A 477 TYR A 480 1 O ILE A 479 N ILE A 444
SITE 1 AC1 7 THR A 13 TYR A 14 PRO A 15 GLN A 16 SITE 2 AC1 7 THR A 17 GLN A 485 ARG A 496 SITE 1 AC2 15 GLY A 269 GLU A 270 ASN A 291 THR A 292 SITE 2 AC2 15 TYR A 293 GLY A 294 THR A 296 ASP A 382 SITE 3 AC2 15 ARG A 396 LYS A 402 ARG A 407 HOH A 661 SITE 4 AC2 15 HOH A 767 HOH A 815 HOH A 831
CRYST1 90.564 94.990 132.547 90.00 90.00 90.00 I 2 2 2 8
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 0.011042 0.000000 0.000000 0.00000
SCALE2 0.000000 0.010527 0.000000 0.00000
SCALE3 0.000000 0.000000 0.007544 0.00000