10 20 30 40 50 60 70 80 3E0L - Header ----|----|----|----|----|----|----|----|----|----|----|----|----|----|----|----| Asymmetric UnitHEADER HYDROLASE 31-JUL-08 3E0L
TITLE COMPUTATIONALLY DESIGNED AMMELIDE DEAMINASE
COMPND MOL_ID: 1; COMPND 2 MOLECULE: GUANINE DEAMINASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: GUANASE, GUANINE AMINASE, GUANINE AMINOHYDROLASE, COMPND 5 GAH, P51-NEDASIN; COMPND 6 EC: 3.5.4.3; COMPND 7 ENGINEERED: YES
SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: GDA; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3)*; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PET15B; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: R5-5
KEYWDS COMPUTATIONAL-DESIGN BACKBONE-FLEXIBILITY LOOP-REMODELING KEYWDS 2 GUANINE CYTOSINE AMMELIDE DEAMINASE, HYDROLASE, METAL- KEYWDS 3 BINDING, ZINC
EXPDTA X-RAY DIFFRACTION
AUTHOR P.M.MURPHY,J.M.BOLDUC,J.L.GALLAHER,B.L.STODDARD,D.BAKER
REVDAT 2 01-DEC-09 3E0L 1 JRNL REVDAT 1 03-MAR-09 3E0L 0
JRNL AUTH P.M.MURPHY,J.M.BOLDUC,J.L.GALLAHER,B.L.STODDARD, JRNL AUTH 2 D.BAKER JRNL TITL ALTERATION OF ENZYME SPECIFICITY BY COMPUTATIONAL JRNL TITL 2 LOOP REMODELING AND DESIGN. JRNL REF PROC.NATL.ACAD.SCI.USA V. 106 9215 2009 JRNL REFN ISSN 0027-8424 JRNL PMID 19470646 JRNL DOI 10.1073/PNAS.0811070106
REMARK 1
REMARK 2 REMARK 2 RESOLUTION. 2.37 ANGSTROMS.
REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.37 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 117.04 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 97.2 REMARK 3 NUMBER OF REFLECTIONS : 41442 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.205 REMARK 3 R VALUE (WORKING SET) : 0.202 REMARK 3 FREE R VALUE : 0.247 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2203 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.37 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.43 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2618 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 83.58 REMARK 3 BIN R VALUE (WORKING SET) : 0.2510 REMARK 3 BIN FREE R VALUE SET COUNT : 136 REMARK 3 BIN FREE R VALUE : 0.3180 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 6965 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 2 REMARK 3 SOLVENT ATOMS : 44 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 41.92 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 3.10000 REMARK 3 B22 (A**2) : -0.99000 REMARK 3 B33 (A**2) : -2.12000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.356 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.247 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.182 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 7.743 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.945 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.920 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 7120 ; 0.007 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 9649 ; 1.028 ; 1.951 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 887 ; 5.512 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 334 ;35.235 ;24.371 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1205 ;15.924 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 34 ;13.072 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 1086 ; 0.071 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 5388 ; 0.003 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 3259 ; 0.217 ; 0.300 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 4893 ; 0.323 ; 0.500 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 458 ; 0.176 ; 0.500 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): 4 ; 0.078 ; 0.500 REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 45 ; 0.221 ; 0.300 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 7 ; 0.159 ; 0.500 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 4499 ; 0.753 ; 2.000 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 7093 ; 1.353 ; 3.000 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2917 ; 1.963 ; 4.000 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 2553 ; 3.172 ; 6.000 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE REMARK 3 RIDING POSITIONS
REMARK 4 REMARK 4 3E0L COMPLIES WITH FORMAT V. 3.20, 01-DEC-08
REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 08-AUG-08. REMARK 100 THE RCSB ID CODE IS RCSB048723.
REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 27-JUN-08 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 5.0.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9774 REMARK 200 MONOCHROMATOR : SINGLE CRYSTAL REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 210 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 43645 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.370 REMARK 200 RESOLUTION RANGE LOW (A) : 117.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.3 REMARK 200 DATA REDUNDANCY : 4.400 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.08600 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 11.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.37 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.45 REMARK 200 COMPLETENESS FOR SHELL (%) : 87.0 REMARK 200 DATA REDUNDANCY IN SHELL : 3.30 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.33900 REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.480 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: CCP4I/PHASER REMARK 200 STARTING MODEL: 2UZ9.PDB, MINUS LOOPS AND DESIGN REGION REMARK 200 REMARK 200 REMARK: NULL
REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 53.91 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.67 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 10MG/ML HGDA WITH 0.2MM AD AGAINST REMARK 280 WELL SOLUTION OF 1.8M AS, 0.2M NACL, 0.1M MES, PH 6.5, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 298K
REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 5555 X+1/2,Y+1/2,Z+1/2 REMARK 290 6555 -X,-Y+1/2,Z REMARK 290 7555 -X+1/2,Y,-Z REMARK 290 8555 X,-Y,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 43.41350 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 116.81000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 53.65750 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 116.81000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 43.41350 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 53.65750 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 43.41350 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 53.65750 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 116.81000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 53.65750 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 43.41350 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 116.81000 REMARK 290 REMARK 290 REMARK: NULL
REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA.
REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4640 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 31370 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -10.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000
REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -2 REMARK 465 SER A -1 REMARK 465 HIS A 0 REMARK 465 MET A 1 REMARK 465 CYS A 2 REMARK 465 ALA A 3 REMARK 465 ALA A 4 REMARK 465 GLN A 5 REMARK 465 MET A 6 REMARK 465 PRO A 7 REMARK 465 SER A 450 REMARK 465 SER A 451 REMARK 465 VAL A 452 REMARK 465 GLY B -2 REMARK 465 SER B -1 REMARK 465 HIS B 0 REMARK 465 MET B 1 REMARK 465 CYS B 2 REMARK 465 ALA B 3 REMARK 465 ALA B 4 REMARK 465 GLN B 5 REMARK 465 MET B 6 REMARK 465 PRO B 7 REMARK 465 SER B 450 REMARK 465 SER B 451 REMARK 465 VAL B 452
REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS(M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 53 CG CD CE NZ REMARK 470 LYS A 56 CG CD CE NZ REMARK 470 LYS A 61 CG CD CE NZ REMARK 470 ASN A 214 CG OD1 ND2 REMARK 470 GLU A 284 CG CD OE1 OE2 REMARK 470 GLU A 358 CG CD OE1 OE2 REMARK 470 ALA A 421 O REMARK 470 LYS A 443 CG CD CE NZ REMARK 470 GLU B 52 CG CD OE1 OE2 REMARK 470 GLU B 122 CG CD OE1 OE2 REMARK 470 LEU B 199 CD1 REMARK 470 ILE B 227 CD1 REMARK 470 LYS B 250 CG CD CE NZ REMARK 470 LYS B 443 CG CD CE NZ
REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NH1 ARG A 163 OD2 ASP A 394 2.07 REMARK 500 O VAL B 216 OH TYR B 253 2.13 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 CZ ARG A 113 NH2 ARG A 113 7555 1.57 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 31 58.39 36.61 REMARK 500 HIS A 82 114.23 -166.10 REMARK 500 ALA A 143 -127.35 -107.30 REMARK 500 ASN A 174 82.81 -161.64 REMARK 500 PHE A 177 75.77 -153.65 REMARK 500 SER A 240 44.77 39.54 REMARK 500 HIS A 277 -78.57 81.38 REMARK 500 CYS A 299 75.54 -117.81 REMARK 500 THR A 371 -84.08 -125.37 REMARK 500 ALA A 421 -110.63 -125.56 REMARK 500 GLU B 47 140.97 -39.40 REMARK 500 HIS B 82 111.85 -166.78 REMARK 500 ALA B 143 -118.85 -108.84 REMARK 500 ASN B 174 89.98 -173.06 REMARK 500 LYS B 181 168.38 179.33 REMARK 500 ARG B 205 18.99 -142.61 REMARK 500 HIS B 277 -91.87 80.15 REMARK 500 THR B 371 -83.36 -124.69 REMARK 500 ALA B 421 -108.83 -117.10 REMARK 500 REMARK 500 REMARK: NULL
REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A1452 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 82 NE2 REMARK 620 2 HIS A 84 NE2 107.1 REMARK 620 3 HIS A 238 NE2 94.1 124.3 REMARK 620 4 ASP A 328 OD1 77.3 91.6 143.8 REMARK 620 5 HOH A1463 O 104.0 142.3 73.3 74.9 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B1452 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 82 NE2 REMARK 620 2 HIS B 84 NE2 114.1 REMARK 620 3 HIS B 238 NE2 100.9 108.6 REMARK 620 4 ASP B 328 OD1 82.5 95.3 151.4 REMARK 620 5 HOH B1468 O 121.4 120.4 81.2 73.1 REMARK 620 N 1 2 3 4
REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 1452 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN B 1452
REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2UZ9 RELATED DB: PDB
REMARK 999 REMARK 999 SEQUENCE REMARK 999 THIS REGION OF THE SEQUENCE WAS COMPUTATIONALLY DESIGNED.
DBREF 3E0L A 1 452 UNP Q9Y2T3 GUAD_HUMAN 1 454 DBREF 3E0L B 1 452 UNP Q9Y2T3 GUAD_HUMAN 1 454
SEQADV 3E0L GLY A -2 UNP Q9Y2T3 EXPRESSION TAG SEQADV 3E0L SER A -1 UNP Q9Y2T3 EXPRESSION TAG SEQADV 3E0L HIS A 0 UNP Q9Y2T3 EXPRESSION TAG SEQADV 3E0L A UNP Q9Y2T3 ARG 213 SEE REMARK 999 SEQADV 3E0L A UNP Q9Y2T3 PHE 214 SEE REMARK 999 SEQADV 3E0L GLY A 213 UNP Q9Y2T3 SER 215 SEE REMARK 999 SEQADV 3E0L ASN A 214 UNP Q9Y2T3 LEU 216 SEE REMARK 999 SEQADV 3E0L GLY A 215 UNP Q9Y2T3 SER 217 SEE REMARK 999 SEQADV 3E0L VAL A 216 UNP Q9Y2T3 CYS 218 SEE REMARK 999 SEQADV 3E0L GLY B -2 UNP Q9Y2T3 EXPRESSION TAG SEQADV 3E0L SER B -1 UNP Q9Y2T3 EXPRESSION TAG SEQADV 3E0L HIS B 0 UNP Q9Y2T3 EXPRESSION TAG SEQADV 3E0L B UNP Q9Y2T3 ARG 213 SEE REMARK 999 SEQADV 3E0L B UNP Q9Y2T3 PHE 214 SEE REMARK 999 SEQADV 3E0L GLY B 213 UNP Q9Y2T3 SER 215 SEE REMARK 999 SEQADV 3E0L ASN B 214 UNP Q9Y2T3 LEU 216 SEE REMARK 999 SEQADV 3E0L GLY B 215 UNP Q9Y2T3 SER 217 SEE REMARK 999 SEQADV 3E0L VAL B 216 UNP Q9Y2T3 CYS 218 SEE REMARK 999
SEQRES 1 A 455 GLY SER HIS MET CYS ALA ALA GLN MET PRO PRO LEU ALA SEQRES 2 A 455 HIS ILE PHE ARG GLY THR PHE VAL HIS SER THR TRP THR SEQRES 3 A 455 CYS PRO MET GLU VAL LEU ARG ASP HIS LEU LEU GLY VAL SEQRES 4 A 455 SER ASP SER GLY LYS ILE VAL PHE LEU GLU GLU ALA SER SEQRES 5 A 455 GLN GLN GLU LYS LEU ALA LYS GLU TRP CYS PHE LYS PRO SEQRES 6 A 455 CYS GLU ILE ARG GLU LEU SER HIS HIS GLU PHE PHE MET SEQRES 7 A 455 PRO GLY LEU VAL ASP THR HIS ILE HIS ALA SER GLN TYR SEQRES 8 A 455 SER PHE ALA GLY SER SER ILE ASP LEU PRO LEU LEU GLU SEQRES 9 A 455 TRP LEU THR LYS TYR THR PHE PRO ALA GLU HIS ARG PHE SEQRES 10 A 455 GLN ASN ILE ASP PHE ALA GLU GLU VAL TYR THR ARG VAL SEQRES 11 A 455 VAL ARG ARG THR LEU LYS ASN GLY THR THR THR ALA CYS SEQRES 12 A 455 TYR PHE ALA THR ILE HIS THR ASP SER SER LEU LEU LEU SEQRES 13 A 455 ALA ASP ILE THR ASP LYS PHE GLY GLN ARG ALA PHE VAL SEQRES 14 A 455 GLY LYS VAL CYS MET ASP LEU ASN ASP THR PHE PRO GLU SEQRES 15 A 455 TYR LYS GLU THR THR GLU GLU SER ILE LYS GLU THR GLU SEQRES 16 A 455 ARG PHE VAL SER GLU MET LEU GLN LYS ASN TYR SER ARG SEQRES 17 A 455 VAL LYS PRO ILE VAL THR PRO GLY ASN GLY VAL SER GLU SEQRES 18 A 455 THR LEU MET GLY GLU LEU GLY ASN ILE ALA LYS THR ARG SEQRES 19 A 455 ASP LEU HIS ILE GLN SER HIS ILE SER GLU ASN ARG ASP SEQRES 20 A 455 GLU VAL GLU ALA VAL LYS ASN LEU TYR PRO SER TYR LYS SEQRES 21 A 455 ASN TYR THR SER VAL TYR ASP LYS ASN ASN LEU LEU THR SEQRES 22 A 455 ASN LYS THR VAL MET ALA HIS GLY CYS TYR LEU SER ALA SEQRES 23 A 455 GLU GLU LEU ASN VAL PHE HIS GLU ARG GLY ALA SER ILE SEQRES 24 A 455 ALA HIS CYS PRO ASN SER ASN LEU SER LEU SER SER GLY SEQRES 25 A 455 PHE LEU ASN VAL LEU GLU VAL LEU LYS HIS GLU VAL LYS SEQRES 26 A 455 ILE GLY LEU GLY THR ASP VAL ALA GLY GLY TYR SER TYR SEQRES 27 A 455 SER MET LEU ASP ALA ILE ARG ARG ALA VAL MET VAL SER SEQRES 28 A 455 ASN ILE LEU LEU ILE ASN LYS VAL ASN GLU LYS SER LEU SEQRES 29 A 455 THR LEU LYS GLU VAL PHE ARG LEU ALA THR LEU GLY GLY SEQRES 30 A 455 SER GLN ALA LEU GLY LEU ASP GLY GLU ILE GLY ASN PHE SEQRES 31 A 455 GLU VAL GLY LYS GLU PHE ASP ALA ILE LEU ILE ASN PRO SEQRES 32 A 455 LYS ALA SER ASP SER PRO ILE ASP LEU PHE TYR GLY ASP SEQRES 33 A 455 PHE PHE GLY ASP ILE SER GLU ALA VAL ILE GLN LYS PHE SEQRES 34 A 455 LEU TYR LEU GLY ASP ASP ARG ASN ILE GLU GLU VAL TYR SEQRES 35 A 455 VAL GLY GLY LYS GLN VAL VAL PRO PHE SER SER SER VAL SEQRES 1 B 455 GLY SER HIS MET CYS ALA ALA GLN MET PRO PRO LEU ALA SEQRES 2 B 455 HIS ILE PHE ARG GLY THR PHE VAL HIS SER THR TRP THR SEQRES 3 B 455 CYS PRO MET GLU VAL LEU ARG ASP HIS LEU LEU GLY VAL SEQRES 4 B 455 SER ASP SER GLY LYS ILE VAL PHE LEU GLU GLU ALA SER SEQRES 5 B 455 GLN GLN GLU LYS LEU ALA LYS GLU TRP CYS PHE LYS PRO SEQRES 6 B 455 CYS GLU ILE ARG GLU LEU SER HIS HIS GLU PHE PHE MET SEQRES 7 B 455 PRO GLY LEU VAL ASP THR HIS ILE HIS ALA SER GLN TYR SEQRES 8 B 455 SER PHE ALA GLY SER SER ILE ASP LEU PRO LEU LEU GLU SEQRES 9 B 455 TRP LEU THR LYS TYR THR PHE PRO ALA GLU HIS ARG PHE SEQRES 10 B 455 GLN ASN ILE ASP PHE ALA GLU GLU VAL TYR THR ARG VAL SEQRES 11 B 455 VAL ARG ARG THR LEU LYS ASN GLY THR THR THR ALA CYS SEQRES 12 B 455 TYR PHE ALA THR ILE HIS THR ASP SER SER LEU LEU LEU SEQRES 13 B 455 ALA ASP ILE THR ASP LYS PHE GLY GLN ARG ALA PHE VAL SEQRES 14 B 455 GLY LYS VAL CYS MET ASP LEU ASN ASP THR PHE PRO GLU SEQRES 15 B 455 TYR LYS GLU THR THR GLU GLU SER ILE LYS GLU THR GLU SEQRES 16 B 455 ARG PHE VAL SER GLU MET LEU GLN LYS ASN TYR SER ARG SEQRES 17 B 455 VAL LYS PRO ILE VAL THR PRO GLY ASN GLY VAL SER GLU SEQRES 18 B 455 THR LEU MET GLY GLU LEU GLY ASN ILE ALA LYS THR ARG SEQRES 19 B 455 ASP LEU HIS ILE GLN SER HIS ILE SER GLU ASN ARG ASP SEQRES 20 B 455 GLU VAL GLU ALA VAL LYS ASN LEU TYR PRO SER TYR LYS SEQRES 21 B 455 ASN TYR THR SER VAL TYR ASP LYS ASN ASN LEU LEU THR SEQRES 22 B 455 ASN LYS THR VAL MET ALA HIS GLY CYS TYR LEU SER ALA SEQRES 23 B 455 GLU GLU LEU ASN VAL PHE HIS GLU ARG GLY ALA SER ILE SEQRES 24 B 455 ALA HIS CYS PRO ASN SER ASN LEU SER LEU SER SER GLY SEQRES 25 B 455 PHE LEU ASN VAL LEU GLU VAL LEU LYS HIS GLU VAL LYS SEQRES 26 B 455 ILE GLY LEU GLY THR ASP VAL ALA GLY GLY TYR SER TYR SEQRES 27 B 455 SER MET LEU ASP ALA ILE ARG ARG ALA VAL MET VAL SER SEQRES 28 B 455 ASN ILE LEU LEU ILE ASN LYS VAL ASN GLU LYS SER LEU SEQRES 29 B 455 THR LEU LYS GLU VAL PHE ARG LEU ALA THR LEU GLY GLY SEQRES 30 B 455 SER GLN ALA LEU GLY LEU ASP GLY GLU ILE GLY ASN PHE SEQRES 31 B 455 GLU VAL GLY LYS GLU PHE ASP ALA ILE LEU ILE ASN PRO SEQRES 32 B 455 LYS ALA SER ASP SER PRO ILE ASP LEU PHE TYR GLY ASP SEQRES 33 B 455 PHE PHE GLY ASP ILE SER GLU ALA VAL ILE GLN LYS PHE SEQRES 34 B 455 LEU TYR LEU GLY ASP ASP ARG ASN ILE GLU GLU VAL TYR SEQRES 35 B 455 VAL GLY GLY LYS GLN VAL VAL PRO PHE SER SER SER VAL
HET ZN A1452 1 HET ZN B1452 1
HETNAM ZN ZINC ION
FORMUL 3 ZN 2(ZN 2+) FORMUL 5 HOH *44(H2 O)
HELIX 1 1 GLN A 50 TRP A 58 1 9 HELIX 2 2 LYS A 61 CYS A 63 5 3 HELIX 3 3 SER A 86 ALA A 91 5 6 HELIX 4 4 PRO A 98 TYR A 106 1 9 HELIX 5 5 TYR A 106 ARG A 113 1 8 HELIX 6 6 ASN A 116 ASN A 134 1 19 HELIX 7 7 HIS A 146 GLY A 161 1 16 HELIX 8 8 THR A 183 GLN A 200 1 18 HELIX 9 9 SER A 217 ASP A 232 1 16 HELIX 10 10 ASN A 242 TYR A 253 1 12 HELIX 11 11 ASN A 258 LYS A 265 1 8 HELIX 12 12 SER A 282 GLY A 293 1 12 HELIX 13 13 CYS A 299 LEU A 306 1 8 HELIX 14 14 ASN A 312 HIS A 319 1 8 HELIX 15 15 SER A 336 ASN A 354 1 19 HELIX 16 16 THR A 362 THR A 371 1 10 HELIX 17 17 THR A 371 LEU A 378 1 8 HELIX 18 18 ASP A 417 ALA A 421 5 5 HELIX 19 19 VAL A 422 GLY A 430 1 9 HELIX 20 20 GLN B 50 TRP B 58 1 9 HELIX 21 21 LYS B 61 ILE B 65 5 5 HELIX 22 22 SER B 86 ALA B 91 5 6 HELIX 23 23 PRO B 98 TYR B 106 1 9 HELIX 24 24 TYR B 106 ARG B 113 1 8 HELIX 25 25 ASN B 116 LYS B 133 1 18 HELIX 26 26 HIS B 146 GLY B 161 1 16 HELIX 27 27 THR B 183 GLN B 200 1 18 HELIX 28 28 SER B 217 ARG B 231 1 15 HELIX 29 29 ASN B 242 TYR B 253 1 12 HELIX 30 30 ASN B 258 LYS B 265 1 8 HELIX 31 31 SER B 282 GLY B 293 1 12 HELIX 32 32 CYS B 299 LEU B 306 1 8 HELIX 33 33 ASN B 312 HIS B 319 1 8 HELIX 34 34 SER B 336 ASN B 354 1 19 HELIX 35 35 THR B 362 THR B 371 1 10 HELIX 36 36 THR B 371 LEU B 378 1 8 HELIX 37 37 ASP B 417 GLU B 420 5 4 HELIX 38 38 ALA B 421 GLY B 430 1 10 HELIX 39 39 ASP B 431 ARG B 433 5 3
SHEET 1 A 4 ILE A 42 GLU A 47 0 SHEET 2 A 4 GLU A 27 VAL A 36 -1 N LEU A 33 O GLU A 46 SHEET 3 A 4 HIS A 11 HIS A 19 -1 N PHE A 17 O LEU A 29 SHEET 4 A 4 ILE A 65 GLU A 67 1 O ARG A 66 N ARG A 14 SHEET 1 B 7 ILE A 42 GLU A 47 0 SHEET 2 B 7 GLU A 27 VAL A 36 -1 N LEU A 33 O GLU A 46 SHEET 3 B 7 HIS A 11 HIS A 19 -1 N PHE A 17 O LEU A 29 SHEET 4 B 7 PHE A 73 PRO A 76 1 O PHE A 74 N THR A 16 SHEET 5 B 7 ALA A 395 ILE A 398 -1 O ILE A 398 N PHE A 73 SHEET 6 B 7 ILE A 435 VAL A 440 -1 O TYR A 439 N ALA A 395 SHEET 7 B 7 LYS A 443 VAL A 446 -1 O LYS A 443 N VAL A 440 SHEET 1 C10 VAL A 169 CYS A 170 0 SHEET 2 C10 VAL A 206 PRO A 212 1 O THR A 211 N CYS A 170 SHEET 3 C10 HIS A 234 ILE A 239 1 O HIS A 234 N VAL A 210 SHEET 4 C10 THR A 273 HIS A 277 1 O ALA A 276 N SER A 237 SHEET 5 C10 SER A 295 HIS A 298 1 O SER A 295 N THR A 273 SHEET 6 C10 LYS A 322 LEU A 325 1 O GLY A 324 N HIS A 298 SHEET 7 C10 LEU A 78 HIS A 84 1 N THR A 81 O LEU A 325 SHEET 8 C10 THR A 136 PHE A 142 1 O THR A 138 N ASP A 80 SHEET 9 C10 ARG A 163 GLY A 167 1 O PHE A 165 N TYR A 141 SHEET 10 C10 VAL A 206 PRO A 212 1 O LYS A 207 N VAL A 166 SHEET 1 D 4 ILE B 42 GLU B 47 0 SHEET 2 D 4 CYS B 24 VAL B 36 -1 N LEU B 33 O GLU B 46 SHEET 3 D 4 HIS B 11 THR B 21 -1 N PHE B 17 O LEU B 29 SHEET 4 D 4 ARG B 66 GLU B 67 1 O ARG B 66 N ILE B 12 SHEET 1 E 7 ILE B 42 GLU B 47 0 SHEET 2 E 7 CYS B 24 VAL B 36 -1 N LEU B 33 O GLU B 46 SHEET 3 E 7 HIS B 11 THR B 21 -1 N PHE B 17 O LEU B 29 SHEET 4 E 7 PHE B 73 PRO B 76 1 O PHE B 74 N THR B 16 SHEET 5 E 7 ALA B 395 ILE B 398 -1 O ILE B 398 N PHE B 73 SHEET 6 E 7 ILE B 435 VAL B 440 -1 O TYR B 439 N ALA B 395 SHEET 7 E 7 LYS B 443 VAL B 446 -1 O VAL B 445 N VAL B 438 SHEET 1 F 5 LEU B 78 HIS B 84 0 SHEET 2 F 5 THR B 136 PHE B 142 1 O PHE B 142 N ILE B 83 SHEET 3 F 5 ARG B 163 GLY B 167 1 O PHE B 165 N TYR B 141 SHEET 4 F 5 VAL B 206 PRO B 212 1 O LYS B 207 N ALA B 164 SHEET 5 F 5 VAL B 169 CYS B 170 1 N CYS B 170 O THR B 211 SHEET 1 G 8 LEU B 78 HIS B 84 0 SHEET 2 G 8 THR B 136 PHE B 142 1 O PHE B 142 N ILE B 83 SHEET 3 G 8 ARG B 163 GLY B 167 1 O PHE B 165 N TYR B 141 SHEET 4 G 8 VAL B 206 PRO B 212 1 O LYS B 207 N ALA B 164 SHEET 5 G 8 HIS B 234 ILE B 239 1 O GLN B 236 N VAL B 210 SHEET 6 G 8 THR B 273 HIS B 277 1 O ALA B 276 N SER B 237 SHEET 7 G 8 SER B 295 HIS B 298 1 O SER B 295 N THR B 273 SHEET 8 G 8 LYS B 322 LEU B 325 1 O GLY B 324 N HIS B 298
LINK NE2 HIS A 82 ZN ZN A1452 1555 1555 2.10 LINK NE2 HIS A 84 ZN ZN A1452 1555 1555 1.96 LINK NE2 HIS A 238 ZN ZN A1452 1555 1555 2.06 LINK OD1 ASP A 328 ZN ZN A1452 1555 1555 2.27 LINK NE2 HIS B 82 ZN ZN B1452 1555 1555 2.01 LINK NE2 HIS B 84 ZN ZN B1452 1555 1555 2.11 LINK NE2 HIS B 238 ZN ZN B1452 1555 1555 2.09 LINK OD1 ASP B 328 ZN ZN B1452 1555 1555 2.15 LINK ZN ZN A1452 O HOH A1463 1555 1555 1.91 LINK ZN ZN B1452 O HOH B1468 1555 1555 2.07
CISPEP 1 VAL A 329 ALA A 330 0 3.46 CISPEP 2 VAL A 446 PRO A 447 0 3.14 CISPEP 3 VAL B 329 ALA B 330 0 6.95 CISPEP 4 VAL B 446 PRO B 447 0 -1.50
SITE 1 AC1 5 HIS A 82 HIS A 84 HIS A 238 ASP A 328 SITE 2 AC1 5 HOH A1463 SITE 1 AC2 5 HIS B 82 HIS B 84 HIS B 238 ASP B 328 SITE 2 AC2 5 HOH B1468
CRYST1 86.827 107.315 233.620 90.00 90.00 90.00 I 21 21 21 16
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 0.011517 0.000000 0.000000 0.00000
SCALE2 0.000000 0.009318 0.000000 0.00000
SCALE3 0.000000 0.000000 0.004280 0.00000