10 20 30 40 50 60 70 80 3D8F - Header ----|----|----|----|----|----|----|----|----|----|----|----|----|----|----|----| Asymmetric UnitHEADER PROTEIN BINDING 23-MAY-08 3D8F
TITLE CRYSTAL STRUCTURE OF THE HUMAN FE65-PTB1 DOMAIN WITH BOUND TITLE 2 PHOSPHATE (TRIGONAL CRYSTAL FORM)
COMPND MOL_ID: 1; COMPND 2 MOLECULE: AMYLOID BETA A4 PRECURSOR PROTEIN-BINDING FAMILY COMPND 3 B MEMBER 1; COMPND 4 CHAIN: A, B, C, D; COMPND 5 FRAGMENT: PHOSPHOTYROSINE BINDING DOMAIN 1; COMPND 6 SYNONYM: FE65-PTB1, FE65 PROTEIN; COMPND 7 ENGINEERED: YES
SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: APBB1, FE65, RIR; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21 (DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET24D
KEYWDS ALPHA-BETA STRUCTURE, PHOSPHOTYROSINE BINDING DOMAIN, KEYWDS 2 PROTEIN BINDING
EXPDTA X-RAY DIFFRACTION
AUTHOR J.RADZIMANOWSKI,S.RAVAUD,I.SINNING,K.WILD
REVDAT 3 24-FEB-09 3D8F 1 VERSN REVDAT 2 18-NOV-08 3D8F 1 JRNL REVDAT 1 10-JUN-08 3D8F 0
JRNL AUTH J.RADZIMANOWSKI,S.RAVAUD,S.SCHLESINGER,J.KOCH, JRNL AUTH 2 K.BEYREUTHER,I.SINNING,K.WILD JRNL TITL CRYSTAL STRUCTURE OF THE HUMAN FE65-PTB1 DOMAIN. JRNL REF J.BIOL.CHEM. V. 283 23113 2008 JRNL REFN ISSN 0021-9258 JRNL PMID 18550529 JRNL DOI 10.1074/JBC.M800861200
REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH J.RADZIMANOWSKI,S.RAVAUD,K.BEYREUTHER,I.SINNING, REMARK 1 AUTH 2 K.WILD REMARK 1 TITL MERCURY-INDUCED CRYSTALLIZATION AND SAD PHASING OF REMARK 1 TITL 2 THE HUMAN FE65-PTB1 DOMAIN. REMARK 1 REF ACTA CRYSTALLOGR.,SECT.F V. 64 382 2008 REMARK 1 REFN ESSN 1744-3091 REMARK 1 PMID 18453707 REMARK 1 DOI 10.1107/S174430910800835X
REMARK 2 REMARK 2 RESOLUTION. 2.70 ANGSTROMS.
REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 49.21 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 17104 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.245 REMARK 3 R VALUE (WORKING SET) : 0.242 REMARK 3 FREE R VALUE : 0.313 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 865 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.70 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.77 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1215 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.00 REMARK 3 BIN R VALUE (WORKING SET) : 0.3300 REMARK 3 BIN FREE R VALUE SET COUNT : 64 REMARK 3 BIN FREE R VALUE : 0.3790 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3968 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 10 REMARK 3 SOLVENT ATOMS : 22 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 59.93 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.36000 REMARK 3 B22 (A**2) : -0.36000 REMARK 3 B33 (A**2) : 0.54000 REMARK 3 B12 (A**2) : -0.18000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 2.740 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.427 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.347 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 16.656 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.937 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.888 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4036 ; 0.014 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5437 ; 1.635 ; 1.968 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 495 ; 7.068 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 179 ;41.146 ;24.022 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 755 ;19.528 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 32 ;21.697 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 621 ; 0.092 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2946 ; 0.005 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1864 ; 0.251 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 2717 ; 0.316 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 163 ; 0.188 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 50 ; 0.358 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 4 ; 0.133 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2570 ; 0.942 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 4016 ; 1.632 ; 2.000 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1639 ; 1.918 ; 3.000 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1421 ; 3.333 ; 4.500 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL
REMARK 4 REMARK 4 3D8F COMPLIES WITH FORMAT V. 3.15, 01-DEC-08
REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 28-MAY-08. REMARK 100 THE RCSB ID CODE IS RCSB047722.
REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 19-JUL-07 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID14-2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.00 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 4 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 17113 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.700 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 3.800 REMARK 200 R MERGE (I) : 0.07700 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 12.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.70 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.77 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 3.80 REMARK 200 R MERGE FOR SHELL (I) : 0.34100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 3.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL
REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 48.61 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.39 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100MM HEPES, 5% (V/V) ETHYLENE REMARK 280 GLYCOL, 50MM NA2HPO4, 10% (W/V) PEG 3350, PH 7.5, VAPOR REMARK 280 DIFFUSION, TEMPERATURE 291K
REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: H 3 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 X+2/3,Y+1/3,Z+1/3 REMARK 290 5555 -Y+2/3,X-Y+1/3,Z+1/3 REMARK 290 6555 -X+Y+2/3,-X+1/3,Z+1/3 REMARK 290 7555 X+1/3,Y+2/3,Z+2/3 REMARK 290 8555 -Y+1/3,X-Y+2/3,Z+2/3 REMARK 290 9555 -X+Y+1/3,-X+2/3,Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 73.02000 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 42.15812 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 26.09800 REMARK 290 SMTRY1 5 -0.500000 -0.866025 0.000000 73.02000 REMARK 290 SMTRY2 5 0.866025 -0.500000 0.000000 42.15812 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 26.09800 REMARK 290 SMTRY1 6 -0.500000 0.866025 0.000000 73.02000 REMARK 290 SMTRY2 6 -0.866025 -0.500000 0.000000 42.15812 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 26.09800 REMARK 290 SMTRY1 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 84.31623 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 52.19600 REMARK 290 SMTRY1 8 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 8 0.866025 -0.500000 0.000000 84.31623 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 52.19600 REMARK 290 SMTRY1 9 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 -0.500000 0.000000 84.31623 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 52.19600 REMARK 290 REMARK 290 REMARK: NULL
REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3, 4 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA.
REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 4 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000
REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 LYS A 405 REMARK 465 ASN A 406 REMARK 465 ASN A 407 REMARK 465 LEU A 408 REMARK 465 HIS A 409 REMARK 465 ASP A 410 REMARK 465 PRO A 411 REMARK 465 MET A 412 REMARK 465 SER A 413 REMARK 465 GLY A 414 REMARK 465 GLY A 415 REMARK 465 TRP A 416 REMARK 465 GLY A 417 REMARK 465 GLU A 418 REMARK 465 GLY A 419 REMARK 465 HIS A 508 REMARK 465 HIS A 509 REMARK 465 HIS A 510 REMARK 465 HIS A 511 REMARK 465 HIS A 512 REMARK 465 HIS A 513 REMARK 465 TYR B 403 REMARK 465 HIS B 404 REMARK 465 LYS B 405 REMARK 465 ASN B 406 REMARK 465 ASN B 407 REMARK 465 LEU B 408 REMARK 465 HIS B 409 REMARK 465 ASP B 410 REMARK 465 PRO B 411 REMARK 465 MET B 412 REMARK 465 SER B 413 REMARK 465 GLY B 414 REMARK 465 ARG B 457 REMARK 465 ASP B 458 REMARK 465 SER B 459 REMARK 465 GLY B 460 REMARK 465 ARG B 461 REMARK 465 HIS B 509 REMARK 465 HIS B 510 REMARK 465 HIS B 511 REMARK 465 HIS B 512 REMARK 465 HIS B 513 REMARK 465 LYS C 405 REMARK 465 ASN C 406 REMARK 465 ASN C 407 REMARK 465 LEU C 408 REMARK 465 HIS C 409 REMARK 465 ASP C 410 REMARK 465 PRO C 411 REMARK 465 MET C 412 REMARK 465 SER C 413 REMARK 465 GLY C 414 REMARK 465 GLY C 415 REMARK 465 TRP C 416 REMARK 465 GLY C 417 REMARK 465 GLU C 418 REMARK 465 GLY C 419 REMARK 465 HIS C 508 REMARK 465 HIS C 509 REMARK 465 HIS C 510 REMARK 465 HIS C 511 REMARK 465 HIS C 512 REMARK 465 HIS C 513 REMARK 465 TYR D 403 REMARK 465 HIS D 404 REMARK 465 LYS D 405 REMARK 465 ASN D 406 REMARK 465 ASN D 407 REMARK 465 LEU D 408 REMARK 465 HIS D 409 REMARK 465 ASP D 410 REMARK 465 PRO D 411 REMARK 465 MET D 412 REMARK 465 SER D 413 REMARK 465 GLY D 414 REMARK 465 ARG D 457 REMARK 465 ASP D 458 REMARK 465 SER D 459 REMARK 465 GLY D 460 REMARK 465 ARG D 461 REMARK 465 HIS D 508 REMARK 465 HIS D 509 REMARK 465 HIS D 510 REMARK 465 HIS D 511 REMARK 465 HIS D 512 REMARK 465 HIS D 513
REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO D 487 C - N - CA ANGL. DEV. = -10.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ILE A 367 90.24 -54.85 REMARK 500 SER A 390 -70.02 -87.52 REMARK 500 TRP A 453 -169.95 -127.20 REMARK 500 ASP A 458 -146.81 -88.36 REMARK 500 ARG A 461 41.87 -88.17 REMARK 500 ALA A 504 -8.16 -58.11 REMARK 500 LEU A 506 48.43 -89.93 REMARK 500 LEU B 401 -13.35 -142.75 REMARK 500 LEU B 441 94.53 -61.08 REMARK 500 HIS B 443 144.11 -171.59 REMARK 500 ARG B 463 51.63 -144.94 REMARK 500 LEU B 473 -70.28 -103.90 REMARK 500 THR B 474 25.37 -71.89 REMARK 500 GLN B 475 70.71 30.34 REMARK 500 LEU B 506 7.06 -54.91 REMARK 500 ILE C 367 93.21 -64.54 REMARK 500 CYS C 369 121.34 -173.84 REMARK 500 GLN C 439 7.72 88.61 REMARK 500 HIS C 443 144.19 -175.77 REMARK 500 ASP C 458 160.15 -47.38 REMARK 500 ARG C 461 22.57 -152.06 REMARK 500 LEU C 473 -79.27 -76.58 REMARK 500 GLU D 429 29.36 48.94 REMARK 500 GLN D 439 16.11 80.31 REMARK 500 HIS D 443 149.97 175.52 REMARK 500 ILE D 448 -16.24 -44.99 REMARK 500 VAL D 455 -133.48 -124.36 REMARK 500 ARG D 463 56.56 -117.14 REMARK 500 LEU D 473 -77.50 -75.94 REMARK 500 GLN D 475 29.81 46.20 REMARK 500 PRO D 487 109.26 -59.33 REMARK 500 ALA D 488 -34.53 -28.92 REMARK 500 ALA D 504 20.04 -79.68 REMARK 500 GLU D 505 44.10 -90.55 REMARK 500 LEU D 506 14.51 -69.06 REMARK 500 REMARK 500 REMARK: NULL
REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 9 DISTANCE = 5.87 ANGSTROMS
REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 A 1 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 C 2
REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3D8D RELATED DB: PDB REMARK 900 RELATED ID: 3D8E RELATED DB: PDB
DBREF 3D8F A 366 505 UNP O00213 APBB1_HUMAN 366 505 DBREF 3D8F B 366 505 UNP O00213 APBB1_HUMAN 366 505 DBREF 3D8F C 366 505 UNP O00213 APBB1_HUMAN 366 505 DBREF 3D8F D 366 505 UNP O00213 APBB1_HUMAN 366 505
SEQADV 3D8F LEU A 506 UNP O00213 EXPRESSION TAG SEQADV 3D8F GLU A 507 UNP O00213 EXPRESSION TAG SEQADV 3D8F HIS A 508 UNP O00213 EXPRESSION TAG SEQADV 3D8F HIS A 509 UNP O00213 EXPRESSION TAG SEQADV 3D8F HIS A 510 UNP O00213 EXPRESSION TAG SEQADV 3D8F HIS A 511 UNP O00213 EXPRESSION TAG SEQADV 3D8F HIS A 512 UNP O00213 EXPRESSION TAG SEQADV 3D8F HIS A 513 UNP O00213 EXPRESSION TAG SEQADV 3D8F LEU B 506 UNP O00213 EXPRESSION TAG SEQADV 3D8F GLU B 507 UNP O00213 EXPRESSION TAG SEQADV 3D8F HIS B 508 UNP O00213 EXPRESSION TAG SEQADV 3D8F HIS B 509 UNP O00213 EXPRESSION TAG SEQADV 3D8F HIS B 510 UNP O00213 EXPRESSION TAG SEQADV 3D8F HIS B 511 UNP O00213 EXPRESSION TAG SEQADV 3D8F HIS B 512 UNP O00213 EXPRESSION TAG SEQADV 3D8F HIS B 513 UNP O00213 EXPRESSION TAG SEQADV 3D8F LEU C 506 UNP O00213 EXPRESSION TAG SEQADV 3D8F GLU C 507 UNP O00213 EXPRESSION TAG SEQADV 3D8F HIS C 508 UNP O00213 EXPRESSION TAG SEQADV 3D8F HIS C 509 UNP O00213 EXPRESSION TAG SEQADV 3D8F HIS C 510 UNP O00213 EXPRESSION TAG SEQADV 3D8F HIS C 511 UNP O00213 EXPRESSION TAG SEQADV 3D8F HIS C 512 UNP O00213 EXPRESSION TAG SEQADV 3D8F HIS C 513 UNP O00213 EXPRESSION TAG SEQADV 3D8F LEU D 506 UNP O00213 EXPRESSION TAG SEQADV 3D8F GLU D 507 UNP O00213 EXPRESSION TAG SEQADV 3D8F HIS D 508 UNP O00213 EXPRESSION TAG SEQADV 3D8F HIS D 509 UNP O00213 EXPRESSION TAG SEQADV 3D8F HIS D 510 UNP O00213 EXPRESSION TAG SEQADV 3D8F HIS D 511 UNP O00213 EXPRESSION TAG SEQADV 3D8F HIS D 512 UNP O00213 EXPRESSION TAG SEQADV 3D8F HIS D 513 UNP O00213 EXPRESSION TAG
SEQRES 1 A 148 GLY ILE LYS CYS PHE ALA VAL ARG SER LEU GLY TRP VAL SEQRES 2 A 148 GLU MET THR GLU GLU GLU LEU ALA PRO GLY ARG SER SER SEQRES 3 A 148 VAL ALA VAL ASN ASN CYS ILE ARG GLN LEU SER TYR HIS SEQRES 4 A 148 LYS ASN ASN LEU HIS ASP PRO MET SER GLY GLY TRP GLY SEQRES 5 A 148 GLU GLY LYS ASP LEU LEU LEU GLN LEU GLU ASP GLU THR SEQRES 6 A 148 LEU LYS LEU VAL GLU PRO GLN SER GLN ALA LEU LEU HIS SEQRES 7 A 148 ALA GLN PRO ILE ILE SER ILE ARG VAL TRP GLY VAL GLY SEQRES 8 A 148 ARG ASP SER GLY ARG GLU ARG ASP PHE ALA TYR VAL ALA SEQRES 9 A 148 ARG ASP LYS LEU THR GLN MET LEU LYS CYS HIS VAL PHE SEQRES 10 A 148 ARG CYS GLU ALA PRO ALA LYS ASN ILE ALA THR SER LEU SEQRES 11 A 148 HIS GLU ILE CYS SER LYS ILE MET ALA GLU LEU GLU HIS SEQRES 12 A 148 HIS HIS HIS HIS HIS SEQRES 1 B 148 GLY ILE LYS CYS PHE ALA VAL ARG SER LEU GLY TRP VAL SEQRES 2 B 148 GLU MET THR GLU GLU GLU LEU ALA PRO GLY ARG SER SER SEQRES 3 B 148 VAL ALA VAL ASN ASN CYS ILE ARG GLN LEU SER TYR HIS SEQRES 4 B 148 LYS ASN ASN LEU HIS ASP PRO MET SER GLY GLY TRP GLY SEQRES 5 B 148 GLU GLY LYS ASP LEU LEU LEU GLN LEU GLU ASP GLU THR SEQRES 6 B 148 LEU LYS LEU VAL GLU PRO GLN SER GLN ALA LEU LEU HIS SEQRES 7 B 148 ALA GLN PRO ILE ILE SER ILE ARG VAL TRP GLY VAL GLY SEQRES 8 B 148 ARG ASP SER GLY ARG GLU ARG ASP PHE ALA TYR VAL ALA SEQRES 9 B 148 ARG ASP LYS LEU THR GLN MET LEU LYS CYS HIS VAL PHE SEQRES 10 B 148 ARG CYS GLU ALA PRO ALA LYS ASN ILE ALA THR SER LEU SEQRES 11 B 148 HIS GLU ILE CYS SER LYS ILE MET ALA GLU LEU GLU HIS SEQRES 12 B 148 HIS HIS HIS HIS HIS SEQRES 1 C 148 GLY ILE LYS CYS PHE ALA VAL ARG SER LEU GLY TRP VAL SEQRES 2 C 148 GLU MET THR GLU GLU GLU LEU ALA PRO GLY ARG SER SER SEQRES 3 C 148 VAL ALA VAL ASN ASN CYS ILE ARG GLN LEU SER TYR HIS SEQRES 4 C 148 LYS ASN ASN LEU HIS ASP PRO MET SER GLY GLY TRP GLY SEQRES 5 C 148 GLU GLY LYS ASP LEU LEU LEU GLN LEU GLU ASP GLU THR SEQRES 6 C 148 LEU LYS LEU VAL GLU PRO GLN SER GLN ALA LEU LEU HIS SEQRES 7 C 148 ALA GLN PRO ILE ILE SER ILE ARG VAL TRP GLY VAL GLY SEQRES 8 C 148 ARG ASP SER GLY ARG GLU ARG ASP PHE ALA TYR VAL ALA SEQRES 9 C 148 ARG ASP LYS LEU THR GLN MET LEU LYS CYS HIS VAL PHE SEQRES 10 C 148 ARG CYS GLU ALA PRO ALA LYS ASN ILE ALA THR SER LEU SEQRES 11 C 148 HIS GLU ILE CYS SER LYS ILE MET ALA GLU LEU GLU HIS SEQRES 12 C 148 HIS HIS HIS HIS HIS SEQRES 1 D 148 GLY ILE LYS CYS PHE ALA VAL ARG SER LEU GLY TRP VAL SEQRES 2 D 148 GLU MET THR GLU GLU GLU LEU ALA PRO GLY ARG SER SER SEQRES 3 D 148 VAL ALA VAL ASN ASN CYS ILE ARG GLN LEU SER TYR HIS SEQRES 4 D 148 LYS ASN ASN LEU HIS ASP PRO MET SER GLY GLY TRP GLY SEQRES 5 D 148 GLU GLY LYS ASP LEU LEU LEU GLN LEU GLU ASP GLU THR SEQRES 6 D 148 LEU LYS LEU VAL GLU PRO GLN SER GLN ALA LEU LEU HIS SEQRES 7 D 148 ALA GLN PRO ILE ILE SER ILE ARG VAL TRP GLY VAL GLY SEQRES 8 D 148 ARG ASP SER GLY ARG GLU ARG ASP PHE ALA TYR VAL ALA SEQRES 9 D 148 ARG ASP LYS LEU THR GLN MET LEU LYS CYS HIS VAL PHE SEQRES 10 D 148 ARG CYS GLU ALA PRO ALA LYS ASN ILE ALA THR SER LEU SEQRES 11 D 148 HIS GLU ILE CYS SER LYS ILE MET ALA GLU LEU GLU HIS SEQRES 12 D 148 HIS HIS HIS HIS HIS
HET PO4 A 1 5 HET PO4 C 2 5
HETNAM PO4 PHOSPHATE ION
FORMUL 5 PO4 2(O4 P 3-) FORMUL 7 HOH *22(H2 O)
HELIX 1 1 GLU A 382 ALA A 386 5 5 HELIX 2 2 ARG A 389 SER A 402 1 14 HELIX 3 3 ALA A 488 ALA A 504 1 17 HELIX 4 4 ARG B 389 ARG B 399 1 11 HELIX 5 5 ILE B 448 ILE B 450 5 3 HELIX 6 6 ALA B 488 ALA B 504 1 17 HELIX 7 7 THR C 381 ALA C 386 1 6 HELIX 8 8 ARG C 389 SER C 402 1 14 HELIX 9 9 PRO C 487 MET C 503 1 17 HELIX 10 10 ARG D 389 GLN D 400 1 12 HELIX 11 11 ILE D 448 ILE D 450 5 3 HELIX 12 12 PRO D 487 ALA D 504 1 18
SHEET 1 A 7 ALA A 440 PRO A 446 0 SHEET 2 A 7 THR A 430 GLU A 435 -1 N LEU A 431 O GLN A 445 SHEET 3 A 7 LEU A 422 GLU A 427 -1 N GLN A 425 O LYS A 432 SHEET 4 A 7 LYS A 368 GLU A 379 -1 N VAL A 372 O LEU A 422 SHEET 5 A 7 LYS B 368 GLY B 376 -1 O ALA B 371 N LEU A 375 SHEET 6 A 7 LEU B 477 CYS B 484 -1 O ARG B 483 N ARG B 373 SHEET 7 A 7 GLU B 379 MET B 380 -1 N MET B 380 O LEU B 477 SHEET 1 B 8 ILE A 450 VAL A 455 0 SHEET 2 B 8 ASP A 464 ARG A 470 -1 O VAL A 468 N ARG A 451 SHEET 3 B 8 LEU A 477 CYS A 484 -1 O PHE A 482 N PHE A 465 SHEET 4 B 8 LYS A 368 GLU A 379 -1 N VAL A 378 O CYS A 479 SHEET 5 B 8 LYS B 368 GLY B 376 -1 O ALA B 371 N LEU A 375 SHEET 6 B 8 ASP B 421 GLU B 427 -1 O LEU B 424 N PHE B 370 SHEET 7 B 8 THR B 430 VAL B 434 -1 O LYS B 432 N GLN B 425 SHEET 8 B 8 LEU B 441 PRO B 446 -1 O GLN B 445 N LEU B 431 SHEET 1 C 7 VAL B 452 VAL B 455 0 SHEET 2 C 7 ASP B 464 ARG B 470 -1 O VAL B 468 N VAL B 452 SHEET 3 C 7 LEU B 477 CYS B 484 -1 O PHE B 482 N PHE B 465 SHEET 4 C 7 LYS B 368 GLY B 376 -1 N ARG B 373 O ARG B 483 SHEET 5 C 7 ASP B 421 GLU B 427 -1 O LEU B 424 N PHE B 370 SHEET 6 C 7 THR B 430 VAL B 434 -1 O LYS B 432 N GLN B 425 SHEET 7 C 7 LEU B 441 PRO B 446 -1 O GLN B 445 N LEU B 431 SHEET 1 D 8 LEU C 441 PRO C 446 0 SHEET 2 D 8 THR C 430 VAL C 434 -1 N LEU C 433 O HIS C 443 SHEET 3 D 8 LEU C 422 GLU C 427 -1 N GLN C 425 O LYS C 432 SHEET 4 D 8 LYS C 368 GLU C 379 -1 N VAL C 372 O LEU C 422 SHEET 5 D 8 LYS D 368 GLU D 379 -1 O CYS D 369 N TRP C 377 SHEET 6 D 8 ASP D 421 GLU D 427 -1 O LEU D 422 N VAL D 372 SHEET 7 D 8 THR D 430 VAL D 434 -1 O VAL D 434 N LEU D 423 SHEET 8 D 8 LEU D 441 PRO D 446 -1 O GLN D 445 N LEU D 431 SHEET 1 E 8 ILE C 450 VAL C 455 0 SHEET 2 E 8 ASP C 464 ARG C 470 -1 O VAL C 468 N VAL C 452 SHEET 3 E 8 LEU C 477 CYS C 484 -1 O HIS C 480 N TYR C 467 SHEET 4 E 8 LYS C 368 GLU C 379 -1 N ARG C 373 O ARG C 483 SHEET 5 E 8 LYS D 368 GLU D 379 -1 O CYS D 369 N TRP C 377 SHEET 6 E 8 LEU D 477 CYS D 484 -1 O ARG D 483 N ARG D 373 SHEET 7 E 8 ASP D 464 ARG D 470 -1 N PHE D 465 O PHE D 482 SHEET 8 E 8 VAL D 452 GLY D 454 -1 N VAL D 452 O VAL D 468
SITE 1 AC1 2 ARG A 451 ARG A 470 SITE 1 AC2 2 ARG C 451 ARG C 470
CRYST1 146.040 146.040 78.294 90.00 90.00 120.00 H 3 36
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 0.006847 0.003953 0.000000 0.00000
SCALE2 0.000000 0.007907 0.000000 0.00000
SCALE3 0.000000 0.000000 0.012772 0.00000