10 20 30 40 50 60 70 80 3D21 - Header ----|----|----|----|----|----|----|----|----|----|----|----|----|----|----|----| Asymmetric UnitHEADER OXIDOREDUCTASE 07-MAY-08 3D21
TITLE CRYSTAL STRUCTURE OF A POPLAR WILD-TYPE THIOREDOXIN H, TITLE 2 PTTRXH4
COMPND MOL_ID: 1; COMPND 2 MOLECULE: THIOREDOXIN H-TYPE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: TRXH4; COMPND 5 ENGINEERED: YES
SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: POPULUS TRICHOCARPA X POPULUS SOURCE 3 DELTOIDES; SOURCE 4 ORGANISM_COMMON: BALM OF GILEAD; SOURCE 5 ORGANISM_TAXID: 3695; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_VECTOR: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PSBET
KEYWDS THIOREDOXIN H, ELECTRON TRANSPORT, TRANSPORT, CYTOPLASM, KEYWDS 2 REDOX-ACTIVE CENTER, OXIDOREDUCTASE
EXPDTA X-RAY DIFFRACTION
AUTHOR C.S.KOH,C.DIDIERJEAN,C.CORBIER,N.ROUHIER,J.P.JACQUOT, AUTHOR 2 E.GELHAYE
REVDAT 3 24-FEB-09 3D21 1 VERSN REVDAT 2 09-SEP-08 3D21 1 JRNL REVDAT 1 01-JUL-08 3D21 0
JRNL AUTH C.S.KOH,N.NAVROT,C.DIDIERJEAN,N.ROUHIER,M.HIRASAWA, JRNL AUTH 2 D.B.KNAFF,G.WINGSLE,R.SAMIAN,J.P.JACQUOT,C.CORBIER, JRNL AUTH 3 E.GELHAYE JRNL TITL AN ATYPICAL CATALYTIC MECHANISM INVOLVING THREE JRNL TITL 2 CYSTEINES OF THIOREDOXIN. JRNL REF J.BIOL.CHEM. V. 283 23062 2008 JRNL REFN ISSN 0021-9258 JRNL PMID 18552403 JRNL DOI 10.1074/JBC.M802093200
REMARK 1
REMARK 2 REMARK 2 RESOLUTION. 2.15 ANGSTROMS.
REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.15 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 41.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 13385 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.213 REMARK 3 R VALUE (WORKING SET) : 0.210 REMARK 3 FREE R VALUE : 0.285 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900 REMARK 3 FREE R VALUE TEST SET COUNT : 660 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.15 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.21 REMARK 3 REFLECTION IN BIN (WORKING SET) : 902 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.00 REMARK 3 BIN R VALUE (WORKING SET) : 0.2530 REMARK 3 BIN FREE R VALUE SET COUNT : 43 REMARK 3 BIN FREE R VALUE : 0.3250 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1780 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 62 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 56.53 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.32000 REMARK 3 B22 (A**2) : -1.32000 REMARK 3 B33 (A**2) : 1.98000 REMARK 3 B12 (A**2) : -0.66000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.270 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.238 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.200 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 7.664 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.957 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.927 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1826 ; 0.031 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2476 ; 2.530 ; 1.960 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 220 ; 7.600 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 82 ;32.759 ;24.634 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 322 ;22.483 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 8 ;21.560 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 274 ; 0.230 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1368 ; 0.013 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 756 ; 0.256 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1176 ; 0.327 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 103 ; 0.198 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 29 ; 0.230 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 8 ; 0.421 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1160 ; 1.814 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1796 ; 2.854 ; 2.000 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 805 ; 3.766 ; 3.000 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 680 ; 5.099 ; 4.500 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL
REMARK 4 REMARK 4 3D21 COMPLIES WITH FORMAT V. 3.15, 01-DEC-08
REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 16-MAY-08. REMARK 100 THE RCSB ID CODE IS RCSB047492.
REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 16-MAR-05 REMARK 200 TEMPERATURE (KELVIN) : 100.0 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : EMBL/DESY, HAMBURG REMARK 200 BEAMLINE : X11 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.8123 REMARK 200 MONOCHROMATOR : SI [111], HORIZONTALLY REMARK 200 FOCUSSING REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MAR CCD 165 MM REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 13453 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.150 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : 0.05300 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 22.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.15 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.23 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.39200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.600 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: SEMET MODEL SOLVED USING SAD METHOD REMARK 200 REMARK 200 REMARK: NULL
REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 39.25 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.02 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M NA HEPES (PH 7.5), 30 % (W/V) REMARK 280 PEG 4000, 0.2 M CACL2) WITH 1 MM DTT ADDED TO THE INITIAL REMARK 280 PROTEIN SOLUTION, MICROBATCH UNDER OIL, TEMPERATURE 293K
REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 61 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+5/6 REMARK 290 6555 X-Y,X,Z+1/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 65.33200 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 130.66400 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 97.99800 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 163.33000 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 32.66600 REMARK 290 REMARK 290 REMARK: NULL
REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA.
REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000
REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 GLY A 2 REMARK 465 LEU A 3 REMARK 465 CYS A 4 REMARK 465 LEU A 5 REMARK 465 ALA A 6 REMARK 465 LYS A 7 REMARK 465 ARG A 8 REMARK 465 ASN A 9 REMARK 465 HIS A 10 REMARK 465 ASP A 11 REMARK 465 ALA A 12 REMARK 465 ASP A 13 REMARK 465 ASP A 14 REMARK 465 ASP A 15 REMARK 465 GLU A 16 REMARK 465 PRO A 17 REMARK 465 HIS A 18 REMARK 465 ILE A 19 REMARK 465 GLU A 20 REMARK 465 LEU A 21 REMARK 465 ALA A 22 REMARK 465 GLY A 23 REMARK 465 PRO A 135 REMARK 465 PRO A 136 REMARK 465 SER A 137 REMARK 465 ASP A 138 REMARK 465 LYS A 139 REMARK 465 MET B 1 REMARK 465 GLY B 2 REMARK 465 LEU B 3 REMARK 465 CYS B 4 REMARK 465 LEU B 5 REMARK 465 ALA B 6 REMARK 465 LYS B 7 REMARK 465 ARG B 8 REMARK 465 ASN B 9 REMARK 465 HIS B 10 REMARK 465 ASP B 11 REMARK 465 ALA B 12 REMARK 465 ASP B 13 REMARK 465 ASP B 14 REMARK 465 ASP B 15 REMARK 465 GLU B 16 REMARK 465 PRO B 17 REMARK 465 HIS B 18 REMARK 465 ILE B 19 REMARK 465 GLU B 20 REMARK 465 LEU B 21 REMARK 465 ALA B 22 REMARK 465 GLY B 23 REMARK 465 PRO B 135 REMARK 465 PRO B 136 REMARK 465 SER B 137 REMARK 465 ASP B 138 REMARK 465 LYS B 139
REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 CG GLU A 87 O HOH A 162 1.98 REMARK 500 OD1 ASP A 84 O HOH A 155 2.11 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH B 153 NE2 GLN A 111 5554 1.90 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLY A 24 N GLY A 24 CA 0.106 REMARK 500 PHE A 53 CE1 PHE A 53 CZ 0.119 REMARK 500 VAL A 116 CB VAL A 116 CG1 0.137 REMARK 500 PHE B 53 CE1 PHE B 53 CZ 0.123 REMARK 500 SER B 77 CB SER B 77 OG 0.093 REMARK 500 GLU B 87 CB GLU B 87 CG 0.119 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 VAL A 116 CG1 - CB - CG2 ANGL. DEV. = 10.7 DEGREES REMARK 500 ASP B 36 CB - CG - OD2 ANGL. DEV. = 5.6 DEGREES REMARK 500 LEU B 50 CB - CG - CD2 ANGL. DEV. = 10.7 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TRP A 57 41.15 -101.02 REMARK 500 ALA A 118 54.64 -69.31 REMARK 500 TRP B 57 39.20 -98.65 REMARK 500 ASP B 108 34.52 38.43 REMARK 500 ASP B 132 -67.14 -98.27 REMARK 500 SER B 133 -117.22 -57.42 REMARK 500 REMARK 500 REMARK: NULL
REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 144 DISTANCE = 6.33 ANGSTROMS
REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3D22 RELATED DB: PDB REMARK 900 SAME PROTEIN WITH MUTATION C61S AND K62R
DBREF 3D21 A 1 139 UNP P85801 TRXH_POPJC 1 139 DBREF 3D21 B 1 139 UNP P85801 TRXH_POPJC 1 139
SEQRES 1 A 139 MET GLY LEU CYS LEU ALA LYS ARG ASN HIS ASP ALA ASP SEQRES 2 A 139 ASP ASP GLU PRO HIS ILE GLU LEU ALA GLY GLY ASN VAL SEQRES 3 A 139 HIS LEU ILE THR THR LYS GLU ARG TRP ASP GLN LYS LEU SEQRES 4 A 139 SER GLU ALA SER ARG ASP GLY LYS ILE VAL LEU ALA ASN SEQRES 5 A 139 PHE SER ALA ARG TRP CYS GLY PRO CYS LYS GLN ILE ALA SEQRES 6 A 139 PRO TYR TYR ILE GLU LEU SER GLU ASN TYR PRO SER LEU SEQRES 7 A 139 MET PHE LEU VAL ILE ASP VAL ASP GLU LEU SER ASP PHE SEQRES 8 A 139 SER ALA SER TRP GLU ILE LYS ALA THR PRO THR PHE PHE SEQRES 9 A 139 PHE LEU ARG ASP GLY GLN GLN VAL ASP LYS LEU VAL GLY SEQRES 10 A 139 ALA ASN LYS PRO GLU LEU HIS LYS LYS ILE THR ALA ILE SEQRES 11 A 139 LEU ASP SER LEU PRO PRO SER ASP LYS SEQRES 1 B 139 MET GLY LEU CYS LEU ALA LYS ARG ASN HIS ASP ALA ASP SEQRES 2 B 139 ASP ASP GLU PRO HIS ILE GLU LEU ALA GLY GLY ASN VAL SEQRES 3 B 139 HIS LEU ILE THR THR LYS GLU ARG TRP ASP GLN LYS LEU SEQRES 4 B 139 SER GLU ALA SER ARG ASP GLY LYS ILE VAL LEU ALA ASN SEQRES 5 B 139 PHE SER ALA ARG TRP CYS GLY PRO CYS LYS GLN ILE ALA SEQRES 6 B 139 PRO TYR TYR ILE GLU LEU SER GLU ASN TYR PRO SER LEU SEQRES 7 B 139 MET PHE LEU VAL ILE ASP VAL ASP GLU LEU SER ASP PHE SEQRES 8 B 139 SER ALA SER TRP GLU ILE LYS ALA THR PRO THR PHE PHE SEQRES 9 B 139 PHE LEU ARG ASP GLY GLN GLN VAL ASP LYS LEU VAL GLY SEQRES 10 B 139 ALA ASN LYS PRO GLU LEU HIS LYS LYS ILE THR ALA ILE SEQRES 11 B 139 LEU ASP SER LEU PRO PRO SER ASP LYS
FORMUL 3 HOH *62(H2 O)
HELIX 1 1 THR A 31 ASP A 45 1 15 HELIX 2 2 CYS A 58 TYR A 75 1 18 HELIX 3 3 LEU A 88 TRP A 95 1 8 HELIX 4 4 ASN A 119 LEU A 134 1 16 HELIX 5 5 THR B 31 ASP B 45 1 15 HELIX 6 6 CYS B 58 TYR B 75 1 18 HELIX 7 7 LEU B 88 TRP B 95 1 8 HELIX 8 8 ASN B 119 LEU B 131 1 13
SHEET 1 A 5 VAL A 26 ILE A 29 0 SHEET 2 A 5 LEU A 78 ASP A 84 1 O VAL A 82 N ILE A 29 SHEET 3 A 5 ILE A 48 SER A 54 1 N ASN A 52 O ILE A 83 SHEET 4 A 5 THR A 102 ARG A 107 -1 O THR A 102 N PHE A 53 SHEET 5 A 5 GLN A 110 VAL A 116 -1 O LEU A 115 N PHE A 103 SHEET 1 B 5 VAL B 26 ILE B 29 0 SHEET 2 B 5 LEU B 78 ASP B 84 1 O PHE B 80 N HIS B 27 SHEET 3 B 5 ILE B 48 SER B 54 1 N LEU B 50 O LEU B 81 SHEET 4 B 5 THR B 102 ARG B 107 -1 O THR B 102 N PHE B 53 SHEET 5 B 5 GLN B 110 VAL B 116 -1 O VAL B 112 N PHE B 105
SSBOND 1 CYS A 58 CYS A 61 1555 1555 2.16 SSBOND 2 CYS B 58 CYS B 61 1555 1555 2.17
CISPEP 1 THR A 100 PRO A 101 0 -3.78 CISPEP 2 THR B 100 PRO B 101 0 -4.72
CRYST1 47.355 47.355 195.996 90.00 90.00 120.00 P 61 12
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 0.021117 0.012192 0.000000 0.00000
SCALE2 0.000000 0.024384 0.000000 0.00000
SCALE3 0.000000 0.000000 0.005102 0.00000