10 20 30 40 50 60 70 80 3D1A - Header ----|----|----|----|----|----|----|----|----|----|----|----|----|----|----|----| Asymmetric UnitHEADER OXYGEN STORAGE, OXYGEN TRANSPORT 05-MAY-08 3D1A
TITLE CRYSTAL STRUCTURE DETERMINATION OF GOAT HEMOGLOBIN AT 2.61 ANGSTROM TITLE 2 RESOLUTION
COMPND MOL_ID: 1; COMPND 2 MOLECULE: HEMOGLOBIN SUBUNIT ALPHA-1/2; COMPND 3 CHAIN: A, C; COMPND 4 SYNONYM: HEMOGLOBIN ALPHA-1/2 CHAIN, ALPHA-1/2-GLOBIN; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: HEMOGLOBIN SUBUNIT BETA-A; COMPND 7 CHAIN: B, D; COMPND 8 SYNONYM: HEMOGLOBIN BETA-A CHAIN, BETA-A-GLOBIN, ALANINE BETA-GLOBIN
SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: CAPRA HIRCUS; SOURCE 3 ORGANISM_COMMON: DOMESTIC GOAT, GOATS; SOURCE 4 ORGANISM_TAXID: 9925; SOURCE 5 TISSUE: BLOOD; SOURCE 6 CELL: RED BLOOD CELLS; SOURCE 7 MOL_ID: 2; SOURCE 8 ORGANISM_SCIENTIFIC: CAPRA HIRCUS; SOURCE 9 ORGANISM_COMMON: DOMESTIC GOAT, GOATS; SOURCE 10 ORGANISM_TAXID: 9925; SOURCE 11 TISSUE: BLOOD; SOURCE 12 CELL: RED BLOOD CELLS
KEYWDS ALLOSTERIC EFFECT, LOW OXYGEN AFFINITY, HEME, IRON, METAL-BINDING, KEYWDS 2 TRANSPORT, OXYGEN STORAGE, OXYGEN TRANSPORT
EXPDTA X-RAY DIFFRACTION
AUTHOR P.SATHYA MOORTHY,K.NEELAGANDAN,M.BALASUBRAMANIAN,M.N.PONNUSWAMY
REVDAT 2 21-DEC-16 3D1A 1 AUTHOR VERSN REVDAT 1 12-MAY-09 3D1A 0
JRNL AUTH P.SATHYA MOORTHY,K.NEELAGANDAN,M.BALASUBRAMANIAN, JRNL AUTH 2 M.N.PONNUSWAMY JRNL TITL CRYSTAL STRUCTURE DETERMINATION OF GOAT HEMOGLOBIN AT 2.61 JRNL TITL 2 ANGSTROM JRNL REF TO BE PUBLISHED JRNL REFN
REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH K.NEELAGANDAN,P.SATHYA MOORTHY,M.BALASUBRAMANIAN, REMARK 1 AUTH 2 M.N.PONNUSWAMY REMARK 1 TITL CRYSTALLIZATION OF SHEEP (OVIS ARIES) AND GOAT (CAPRA REMARK 1 TITL 2 HIRCUS) HAEMOGLOBINS UNDER UNBUFFERED LOW-SALT CONDITIONS REMARK 1 REF ACTA CRYSTALLOGR.,SECT.F V. 63 887 2007 REMARK 1 REFN ISSN 1744-3091 REMARK 1 PMID 17909297 REMARK 1 DOI 10.1107/S1744309107044296
REMARK 2 REMARK 2 RESOLUTION. 2.61 ANGSTROMS.
REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.61 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 14.78 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 95.5 REMARK 3 NUMBER OF REFLECTIONS : 14902 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.221 REMARK 3 R VALUE (WORKING SET) : 0.217 REMARK 3 FREE R VALUE : 0.257 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 9.900 REMARK 3 FREE R VALUE TEST SET COUNT : 1636 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.61 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.68 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1015 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 91.31 REMARK 3 BIN R VALUE (WORKING SET) : 0.2910 REMARK 3 BIN FREE R VALUE SET COUNT : 120 REMARK 3 BIN FREE R VALUE : 0.3310 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4389 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 172 REMARK 3 SOLVENT ATOMS : 95 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 27.96 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.00000 REMARK 3 B22 (A**2) : 0.01000 REMARK 3 B33 (A**2) : -0.01000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.395 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.254 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 26.097 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.925 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.898 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4693 ; 0.011 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 6416 ; 1.272 ; 2.059 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 568 ; 5.704 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 188 ;38.090 ;24.043 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 736 ;15.188 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 14 ; 9.295 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 692 ; 0.090 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3542 ; 0.004 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 2364 ; 0.233 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 3182 ; 0.298 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 201 ; 0.143 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): 1 ; 0.123 ; 0.200 REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 46 ; 0.354 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 5 ; 0.230 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2887 ; 0.921 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 4516 ; 1.305 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2034 ; 1.983 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1892 ; 3.004 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL
REMARK 4 REMARK 4 3D1A COMPLIES WITH FORMAT V. 3.30, 13-JUL-11
REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 14-MAY-08. REMARK 100 THE RCSB ID CODE IS RCSB047465.
REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 06-MAR-08 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.54179 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : MAR SCANNER 345 MM PLATE REMARK 200 INTENSITY-INTEGRATION SOFTWARE : AUTOMAR REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 18937 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.500 REMARK 200 RESOLUTION RANGE LOW (A) : 14.960 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : NULL REMARK 200 DATA REDUNDANCY : 3.240 REMARK 200 R MERGE (I) : 0.05400 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 7.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.59 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : 2.88 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: PDB ENTRY 1G08 REMARK 200 REMARK 200 REMARK: NULL
REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 44.14 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.20 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 2MM PEG 3350, 1M NACL, PH 5.5, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 293K
REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 26.70100 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 76.72700 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 33.56900 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 76.72700 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 26.70100 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 33.56900 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL
REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA.
REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 11060 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 23900 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -113.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4120 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 13380 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -52.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4060 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 13390 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -53.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000
REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 0 REMARK 465 MET C 0
REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 2 -157.58 163.81 REMARK 500 SER A 3 -125.30 -131.91 REMARK 500 ALA A 4 -46.04 -156.95 REMARK 500 ASP A 116 34.63 -143.50 REMARK 500 PHE A 117 55.30 -143.89 REMARK 500 TYR A 140 13.50 -141.13 REMARK 500 THR B 4 170.17 -57.65 REMARK 500 LYS B 19 85.13 -68.37 REMARK 500 TYR B 35 76.87 -119.78 REMARK 500 HIS B 44 0.56 -57.90 REMARK 500 HIS B 77 39.65 -145.15 REMARK 500 ASP B 80 39.72 -147.53 REMARK 500 ASP C 74 15.61 -68.08 REMARK 500 ASP C 75 69.94 -173.51 REMARK 500 CYS D 93 -77.27 -82.03 REMARK 500 ASP D 94 15.08 -66.05 REMARK 500 LYS D 95 -60.48 -149.78 REMARK 500 ARG D 144 -8.40 -59.40 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CHIRAL CENTERS REMARK 500 REMARK 500 UNEXPECTED CONFIGURATION OF THE FOLLOWING CHIRAL REMARK 500 CENTER(S) USING IMPROPER CA--C--CB--N CHIRALITY REMARK 500 FOR AMINO ACIDS AND C1'--O4'--N1(N9)--C2' FOR REMARK 500 NUCLEIC ACIDS OR EQUIVALENT ANGLE REMARK 500 M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,6X,F5.1,6X,A1,10X,A1,3X,A16) REMARK 500 REMARK 500 M RES CSSEQI IMPROPER EXPECTED FOUND DETAILS REMARK 500 TYR A 140 19.0 L L OUTSIDE RANGE REMARK 500 REMARK 500 REMARK: NULL
REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HEM B 147 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 92 NE2 REMARK 620 2 HEM B 147 NA 81.6 REMARK 620 3 HEM B 147 NB 93.2 86.3 REMARK 620 4 HEM B 147 NC 98.7 178.6 92.3 REMARK 620 5 HEM B 147 ND 88.9 90.5 175.9 90.9 REMARK 620 6 HOH B 148 O 168.4 98.4 98.4 81.6 79.4 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HEM A 142 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 156 O REMARK 620 2 HEM A 142 NA 91.8 REMARK 620 3 HEM A 142 NB 91.6 85.7 REMARK 620 4 HEM A 142 NC 86.2 177.9 93.5 REMARK 620 5 HEM A 142 ND 85.2 94.2 176.8 86.5 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HEM C 142 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH C 153 O REMARK 620 2 HEM C 142 NA 97.4 REMARK 620 3 HEM C 142 NB 83.7 89.5 REMARK 620 4 HEM C 142 NC 79.1 176.2 88.5 REMARK 620 5 HEM C 142 ND 91.9 91.6 175.6 90.1 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HEM D 147 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH D 154 O REMARK 620 2 HEM D 147 NA 102.4 REMARK 620 3 HEM D 147 NB 89.5 83.3 REMARK 620 4 HEM D 147 NC 77.6 174.5 91.2 REMARK 620 5 HEM D 147 ND 89.4 93.5 176.4 92.0 REMARK 620 N 1 2 3 4
REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE HEM A 142 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE HEM B 147 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE HEM C 142 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE HEM D 147
REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2RI4 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE DETERMINATION OF GOAT METHEMOGLOBIN AT REMARK 900 2.7 ANGSTROM REMARK 900 RELATED ID: 2QU0 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE DETERMINATION OF SHEEP METHEMOGLOBIN AT REMARK 900 2.7 ANGSTROM RESOLUTION
DBREF 3D1A A 0 141 UNP P68238 HBA_CAPHI 1 142 DBREF 3D1A B 2 146 UNP P02077 HBBA_CAPHI 1 145 DBREF 3D1A C 0 141 UNP P68238 HBA_CAPHI 1 142 DBREF 3D1A D 2 146 UNP P02077 HBBA_CAPHI 1 145
SEQRES 1 A 142 MET VAL LEU SER ALA ALA ASP LYS SER ASN VAL LYS ALA SEQRES 2 A 142 ALA TRP GLY LYS VAL GLY GLY ASN ALA GLY ALA TYR GLY SEQRES 3 A 142 ALA GLU ALA LEU GLU ARG MET PHE LEU SER PHE PRO THR SEQRES 4 A 142 THR LYS THR TYR PHE PRO HIS PHE ASP LEU SER HIS GLY SEQRES 5 A 142 SER ALA GLN VAL LYS GLY HIS GLY GLU LYS VAL ALA ALA SEQRES 6 A 142 ALA LEU THR LYS ALA VAL GLY HIS LEU ASP ASP LEU PRO SEQRES 7 A 142 GLY THR LEU SER ASP LEU SER ASP LEU HIS ALA HIS LYS SEQRES 8 A 142 LEU ARG VAL ASP PRO VAL ASN PHE LYS LEU LEU SER HIS SEQRES 9 A 142 SER LEU LEU VAL THR LEU ALA CYS HIS LEU PRO ASN ASP SEQRES 10 A 142 PHE THR PRO ALA VAL HIS ALA SER LEU ASP LYS PHE LEU SEQRES 11 A 142 ALA ASN VAL SER THR VAL LEU THR SER LYS TYR ARG SEQRES 1 B 145 MET LEU THR ALA GLU GLU LYS ALA ALA VAL THR GLY PHE SEQRES 2 B 145 TRP GLY LYS VAL LYS VAL ASP GLU VAL GLY ALA GLU ALA SEQRES 3 B 145 LEU GLY ARG LEU LEU VAL VAL TYR PRO TRP THR GLN ARG SEQRES 4 B 145 PHE PHE GLU HIS PHE GLY ASP LEU SER SER ALA ASP ALA SEQRES 5 B 145 VAL MET ASN ASN ALA LYS VAL LYS ALA HIS GLY LYS LYS SEQRES 6 B 145 VAL LEU ASP SER PHE SER ASN GLY MET LYS HIS LEU ASP SEQRES 7 B 145 ASP LEU LYS GLY THR PHE ALA GLN LEU SER GLU LEU HIS SEQRES 8 B 145 CYS ASP LYS LEU HIS VAL ASP PRO GLU ASN PHE LYS LEU SEQRES 9 B 145 LEU GLY ASN VAL LEU VAL VAL VAL LEU ALA ARG HIS HIS SEQRES 10 B 145 GLY SER GLU PHE THR PRO LEU LEU GLN ALA GLU PHE GLN SEQRES 11 B 145 LYS VAL VAL ALA GLY VAL ALA ASN ALA LEU ALA HIS ARG SEQRES 12 B 145 TYR HIS SEQRES 1 C 142 MET VAL LEU SER ALA ALA ASP LYS SER ASN VAL LYS ALA SEQRES 2 C 142 ALA TRP GLY LYS VAL GLY GLY ASN ALA GLY ALA TYR GLY SEQRES 3 C 142 ALA GLU ALA LEU GLU ARG MET PHE LEU SER PHE PRO THR SEQRES 4 C 142 THR LYS THR TYR PHE PRO HIS PHE ASP LEU SER HIS GLY SEQRES 5 C 142 SER ALA GLN VAL LYS GLY HIS GLY GLU LYS VAL ALA ALA SEQRES 6 C 142 ALA LEU THR LYS ALA VAL GLY HIS LEU ASP ASP LEU PRO SEQRES 7 C 142 GLY THR LEU SER ASP LEU SER ASP LEU HIS ALA HIS LYS SEQRES 8 C 142 LEU ARG VAL ASP PRO VAL ASN PHE LYS LEU LEU SER HIS SEQRES 9 C 142 SER LEU LEU VAL THR LEU ALA CYS HIS LEU PRO ASN ASP SEQRES 10 C 142 PHE THR PRO ALA VAL HIS ALA SER LEU ASP LYS PHE LEU SEQRES 11 C 142 ALA ASN VAL SER THR VAL LEU THR SER LYS TYR ARG SEQRES 1 D 145 MET LEU THR ALA GLU GLU LYS ALA ALA VAL THR GLY PHE SEQRES 2 D 145 TRP GLY LYS VAL LYS VAL ASP GLU VAL GLY ALA GLU ALA SEQRES 3 D 145 LEU GLY ARG LEU LEU VAL VAL TYR PRO TRP THR GLN ARG SEQRES 4 D 145 PHE PHE GLU HIS PHE GLY ASP LEU SER SER ALA ASP ALA SEQRES 5 D 145 VAL MET ASN ASN ALA LYS VAL LYS ALA HIS GLY LYS LYS SEQRES 6 D 145 VAL LEU ASP SER PHE SER ASN GLY MET LYS HIS LEU ASP SEQRES 7 D 145 ASP LEU LYS GLY THR PHE ALA GLN LEU SER GLU LEU HIS SEQRES 8 D 145 CYS ASP LYS LEU HIS VAL ASP PRO GLU ASN PHE LYS LEU SEQRES 9 D 145 LEU GLY ASN VAL LEU VAL VAL VAL LEU ALA ARG HIS HIS SEQRES 10 D 145 GLY SER GLU PHE THR PRO LEU LEU GLN ALA GLU PHE GLN SEQRES 11 D 145 LYS VAL VAL ALA GLY VAL ALA ASN ALA LEU ALA HIS ARG SEQRES 12 D 145 TYR HIS
HET HEM A 142 43 HET HEM B 147 43 HET HEM C 142 43 HET HEM D 147 43
HETNAM HEM PROTOPORPHYRIN IX CONTAINING FE
HETSYN HEM HEME
FORMUL 5 HEM 4(C34 H32 FE N4 O4) FORMUL 9 HOH *95(H2 O)
HELIX 1 1 ALA A 4 LYS A 16 1 13 HELIX 2 2 VAL A 17 GLY A 19 5 3 HELIX 3 3 ASN A 20 PHE A 36 1 17 HELIX 4 4 PRO A 37 PHE A 43 5 7 HELIX 5 5 SER A 52 HIS A 72 1 21 HELIX 6 6 ASP A 75 LYS A 90 1 16 HELIX 7 7 VAL A 96 LEU A 113 1 18 HELIX 8 8 THR A 118 SER A 138 1 21 HELIX 9 9 THR B 4 GLY B 16 1 13 HELIX 10 10 LYS B 19 TYR B 35 1 17 HELIX 11 11 PRO B 36 GLY B 46 5 11 HELIX 12 12 SER B 50 ASN B 56 1 7 HELIX 13 13 ASN B 57 MET B 75 1 19 HELIX 14 14 LYS B 76 ASP B 79 5 4 HELIX 15 15 ASP B 80 PHE B 85 1 6 HELIX 16 16 PHE B 85 LYS B 95 1 11 HELIX 17 17 PRO B 100 GLY B 119 1 20 HELIX 18 18 SER B 120 PHE B 122 5 3 HELIX 19 19 THR B 123 HIS B 143 1 21 HELIX 20 20 ARG B 144 HIS B 146 5 3 HELIX 21 21 SER C 3 GLY C 18 1 16 HELIX 22 22 ASN C 20 PHE C 36 1 17 HELIX 23 23 PRO C 37 PHE C 43 5 7 HELIX 24 24 SER C 52 HIS C 72 1 21 HELIX 25 25 ASP C 75 LEU C 80 1 6 HELIX 26 26 LEU C 80 LYS C 90 1 11 HELIX 27 27 VAL C 96 LEU C 113 1 18 HELIX 28 28 THR C 118 THR C 137 1 20 HELIX 29 29 GLU D 6 GLY D 16 1 11 HELIX 30 30 LYS D 19 TYR D 35 1 17 HELIX 31 31 PRO D 36 GLY D 46 5 11 HELIX 32 32 SER D 50 ASN D 57 1 8 HELIX 33 33 ASN D 57 LYS D 76 1 20 HELIX 34 34 HIS D 77 ASP D 79 5 3 HELIX 35 35 ASP D 80 PHE D 85 1 6 HELIX 36 36 PHE D 85 CYS D 93 1 9 HELIX 37 37 PRO D 100 GLY D 119 1 20 HELIX 38 38 SER D 120 PHE D 122 5 3 HELIX 39 39 THR D 123 HIS D 143 1 21 HELIX 40 40 ARG D 144 HIS D 146 5 3
LINK NE2 HIS B 92 FE HEM B 147 1555 1555 2.37 LINK FE HEM A 142 O HOH A 156 1555 1555 1.84 LINK FE HEM B 147 O HOH B 148 1555 1555 2.01 LINK FE HEM C 142 O HOH C 153 1555 1555 2.09 LINK FE HEM D 147 O HOH D 154 1555 1555 2.21
SITE 1 AC1 15 TYR A 42 PHE A 43 HIS A 45 PHE A 46 SITE 2 AC1 15 HIS A 58 LYS A 61 LEU A 83 HIS A 87 SITE 3 AC1 15 LEU A 91 VAL A 93 ASN A 97 PHE A 98 SITE 4 AC1 15 LEU A 101 HOH A 156 HOH A 176 SITE 1 AC2 14 PHE B 41 PHE B 42 HIS B 44 PHE B 45 SITE 2 AC2 14 HIS B 63 LYS B 66 SER B 70 HIS B 92 SITE 3 AC2 14 LEU B 96 VAL B 98 ASN B 102 LEU B 106 SITE 4 AC2 14 LEU B 141 HOH B 148 SITE 1 AC3 13 MET C 32 TYR C 42 PHE C 43 HIS C 45 SITE 2 AC3 13 HIS C 58 HIS C 87 LEU C 91 ASN C 97 SITE 3 AC3 13 PHE C 98 LEU C 101 LEU C 136 HOH C 148 SITE 4 AC3 13 HOH C 153 SITE 1 AC4 17 THR D 38 PHE D 41 PHE D 42 HIS D 44 SITE 2 AC4 17 PHE D 45 HIS D 63 LYS D 66 SER D 70 SITE 3 AC4 17 PHE D 71 LEU D 88 HIS D 92 LEU D 96 SITE 4 AC4 17 ASN D 102 LEU D 106 VAL D 137 LEU D 141 SITE 5 AC4 17 HOH D 154
CRYST1 53.402 67.138 153.454 90.00 90.00 90.00 P 21 21 21 8
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 0.018726 0.000000 0.000000 0.00000
SCALE2 0.000000 0.014895 0.000000 0.00000
SCALE3 0.000000 0.000000 0.006517 0.00000