10 20 30 40 50 60 70 80 3CXA - Header ----|----|----|----|----|----|----|----|----|----|----|----|----|----|----|----| Asymmetric UnitHEADER ANTIBIOTIC 24-APR-08 3CXA
TITLE CRYSTAL STRUCTURE OF THE COMPLEX OF PEPTIDOGLYCAN TITLE 2 RECOGNITION PROTEIN WITH ALPHA-D-GLUCOPYRANOSYL ALPHA-D- TITLE 3 GLUCOPYRANOSIDE AT 3.4 A RESOLUTION
COMPND MOL_ID: 1; COMPND 2 MOLECULE: PEPTIDOGLYCAN RECOGNITION PROTEIN; COMPND 3 CHAIN: A, B, C, D; COMPND 4 SYNONYM: PEPTIDOGLYCAN RECOGNITION PROTEIN SHORT, PGRP-S
SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: CAMELUS DROMEDARIUS; SOURCE 3 ORGANISM_COMMON: DROMEDARY; SOURCE 4 SECRETION: MILK
KEYWDS PEPTIDOGLYCAN RECOGNITION PROTEIN, COMPLEX, TREHALOSE, KEYWDS 2 IMMUNE RESPONSE, SECRETED, ANTIMICROBIAL, PGRP, ANTIBIOTIC
EXPDTA X-RAY DIFFRACTION
AUTHOR K.BALAJI,P.SHARMA,N.SINGH,M.SINHA,A.BHUSHAN,P.KAUR,S.SHARMA, AUTHOR 2 T.P.SINGH
REVDAT 2 24-FEB-09 3CXA 1 VERSN REVDAT 1 20-MAY-08 3CXA 0
JRNL AUTH K.BALAJI,P.SHARMA,N.SINGH,M.SINHA,A.BHUSHAN,P.KAUR, JRNL AUTH 2 S.SHARMA,T.P.SINGH JRNL TITL CRYSTAL STRUCTURE OF THE COMPLEX OF PEPTIDOGLYCAN JRNL TITL 2 RECOGNITION PROTEIN WITH ALPHA-D-GLUCOPYRANOSYL JRNL TITL 3 ALPHA-D-GLUCOPYRANOSIDE AT 3.4 A RESOLUTION JRNL REF TO BE PUBLISHED JRNL REFN
REMARK 1
REMARK 2 REMARK 2 RESOLUTION. 3.40 ANGSTROMS.
REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES, PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.40 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 93.2 REMARK 3 NUMBER OF REFLECTIONS : 9922 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.225 REMARK 3 FREE R VALUE : 0.263 REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : 551 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : NULL REMARK 3 BIN RESOLUTION RANGE LOW (A) : NULL REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : NULL REMARK 3 BIN FREE R VALUE : NULL REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5344 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 56 REMARK 3 SOLVENT ATOMS : 0 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 39.50 REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.020 REMARK 3 BOND ANGLES (DEGREES) : 2.30 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 20.00 REMARK 3 IMPROPER ANGLES (DEGREES) : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : NULL REMARK 3 KSOL : NULL REMARK 3 BSOL : NULL REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL
REMARK 4 REMARK 4 3CXA COMPLIES WITH FORMAT V. 3.15, 01-DEC-08
REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 25-APR-08. REMARK 100 THE RCSB ID CODE IS RCSB047325.
REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 22-NOV-07 REMARK 200 TEMPERATURE (KELVIN) : 300 REMARK 200 PH : 7.2 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU RU300 REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : GRAPHITE REMARK 200 OPTICS : MIRROR REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 10724 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.400 REMARK 200 RESOLUTION RANGE LOW (A) : 20.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.3 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.18200 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 4.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.40 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.52 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.9 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.54500 REMARK 200 <I/SIGMA(I)> FOR SHELL : 1.900 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 2R2K REMARK 200 REMARK 200 REMARK: NULL
REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 50.21 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.47 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2M SODIUM POTASSIUM TARTRATE, 10% REMARK 280 PEG 3350, PH 7.2, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE REMARK 280 298K
REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 2 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X,Y,-Z REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z+1/2 REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 44.82000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 51.19500 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 81.87000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 44.82000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 51.19500 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 81.87000 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 44.82000 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 51.19500 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 81.87000 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 44.82000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 51.19500 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 81.87000 REMARK 290 REMARK 290 REMARK: NULL
REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3, 4 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA.
REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1740 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 16430 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -13.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 4 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000
REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 13 CG - CD - NE ANGL. DEV. = 13.3 DEGREES REMARK 500 ARG A 13 NE - CZ - NH1 ANGL. DEV. = -4.8 DEGREES REMARK 500 ARG A 13 NE - CZ - NH2 ANGL. DEV. = 4.5 DEGREES REMARK 500 GLU A 14 CB - CA - C ANGL. DEV. = 12.4 DEGREES REMARK 500 ARG A 28 NE - CZ - NH1 ANGL. DEV. = -3.8 DEGREES REMARK 500 ASP A 44 CB - CG - OD1 ANGL. DEV. = 7.1 DEGREES REMARK 500 LYS A 90 CD - CE - NZ ANGL. DEV. = -16.2 DEGREES REMARK 500 ARG A 147 NE - CZ - NH1 ANGL. DEV. = -3.9 DEGREES REMARK 500 LEU A 153 CA - CB - CG ANGL. DEV. = 15.3 DEGREES REMARK 500 ARG B 23 CA - CB - CG ANGL. DEV. = 14.6 DEGREES REMARK 500 ARG B 23 CD - NE - CZ ANGL. DEV. = 8.9 DEGREES REMARK 500 ARG B 23 NE - CZ - NH1 ANGL. DEV. = -5.4 DEGREES REMARK 500 ARG B 28 CD - NE - CZ ANGL. DEV. = -8.8 DEGREES REMARK 500 ARG B 28 NE - CZ - NH1 ANGL. DEV. = -5.3 DEGREES REMARK 500 ARG B 28 NE - CZ - NH2 ANGL. DEV. = 5.2 DEGREES REMARK 500 ILE B 163 CB - CA - C ANGL. DEV. = -13.2 DEGREES REMARK 500 ARG C 16 NE - CZ - NH1 ANGL. DEV. = -5.6 DEGREES REMARK 500 ARG C 138 CG - CD - NE ANGL. DEV. = -12.7 DEGREES REMARK 500 ARG C 138 NE - CZ - NH1 ANGL. DEV. = -3.4 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 2 43.40 -95.06 REMARK 500 ALA A 5 142.90 179.85 REMARK 500 CYS A 6 -100.85 -108.75 REMARK 500 HIS A 93 -21.30 -152.87 REMARK 500 ALA A 94 34.99 -149.22 REMARK 500 TYR A 111 45.79 -102.31 REMARK 500 ASN A 113 -96.53 -101.62 REMARK 500 ARG A 114 137.77 -19.17 REMARK 500 TYR A 141 133.18 -19.60 REMARK 500 GLN A 150 140.68 -174.54 REMARK 500 PRO A 151 94.78 -53.23 REMARK 500 SER A 154 -56.03 -5.27 REMARK 500 ASP B 2 66.22 -118.82 REMARK 500 PRO B 3 129.60 35.55 REMARK 500 PRO B 4 132.73 -1.39 REMARK 500 SER B 8 92.88 48.12 REMARK 500 TYR B 111 42.56 -101.58 REMARK 500 PRO C 3 98.35 -17.53 REMARK 500 PRO C 4 -29.31 -30.11 REMARK 500 SER C 8 40.27 -142.85 REMARK 500 ARG C 23 -4.22 -140.48 REMARK 500 HIS C 93 -2.41 -150.36 REMARK 500 TYR C 111 34.15 -99.82 REMARK 500 PRO C 117 150.15 -47.12 REMARK 500 ASN C 140 60.84 -108.39 REMARK 500 TRP C 166 155.34 -49.99 REMARK 500 PRO D 3 174.84 -53.23 REMARK 500 ASP D 68 170.19 177.98 REMARK 500 HIS D 93 -23.21 -148.25 REMARK 500 ALA D 94 53.76 -146.62 REMARK 500 ASN D 140 35.90 -92.00 REMARK 500 HIS D 168 -16.79 94.42 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 ARG C 28 0.12 SIDE_CHAIN REMARK 500 REMARK 500 REMARK: NULL
REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE TRE B 172 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE TRE A 172 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE TLA C 172
REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2R2K RELATED DB: PDB REMARK 900 RELATED ID: 3C93 RELATED DB: PDB REMARK 900 RELATED ID: 2Z9N RELATED DB: PDB
DBREF 3CXA A 1 171 UNP Q9GK12 PGRP_CAMDR 23 193 DBREF 3CXA B 1 171 UNP Q9GK12 PGRP_CAMDR 23 193 DBREF 3CXA C 1 171 UNP Q9GK12 PGRP_CAMDR 23 193 DBREF 3CXA D 1 171 UNP Q9GK12 PGRP_CAMDR 23 193
SEQRES 1 A 171 GLU ASP PRO PRO ALA CYS GLY SER ILE VAL PRO ARG ARG SEQRES 2 A 171 GLU TRP ARG ALA LEU ALA SER GLU CYS ARG GLU ARG LEU SEQRES 3 A 171 THR ARG PRO VAL ARG TYR VAL VAL VAL SER HIS THR ALA SEQRES 4 A 171 GLY SER HIS CYS ASP THR PRO ALA SER CYS ALA GLN GLN SEQRES 5 A 171 ALA GLN ASN VAL GLN SER TYR HIS VAL ARG ASN LEU GLY SEQRES 6 A 171 TRP CYS ASP VAL GLY TYR ASN PHE LEU ILE GLY GLU ASP SEQRES 7 A 171 GLY LEU VAL TYR GLU GLY ARG GLY TRP ASN ILE LYS GLY SEQRES 8 A 171 ALA HIS ALA GLY PRO THR TRP ASN PRO ILE SER ILE GLY SEQRES 9 A 171 ILE SER PHE MET GLY ASN TYR MET ASN ARG VAL PRO PRO SEQRES 10 A 171 PRO ARG ALA LEU ARG ALA ALA GLN ASN LEU LEU ALA CYS SEQRES 11 A 171 GLY VAL ALA LEU GLY ALA LEU ARG SER ASN TYR GLU VAL SEQRES 12 A 171 LYS GLY HIS ARG ASP VAL GLN PRO THR LEU SER PRO GLY SEQRES 13 A 171 ASP ARG LEU TYR GLU ILE ILE GLN THR TRP SER HIS TYR SEQRES 14 A 171 ARG ALA SEQRES 1 B 171 GLU ASP PRO PRO ALA CYS GLY SER ILE VAL PRO ARG ARG SEQRES 2 B 171 GLU TRP ARG ALA LEU ALA SER GLU CYS ARG GLU ARG LEU SEQRES 3 B 171 THR ARG PRO VAL ARG TYR VAL VAL VAL SER HIS THR ALA SEQRES 4 B 171 GLY SER HIS CYS ASP THR PRO ALA SER CYS ALA GLN GLN SEQRES 5 B 171 ALA GLN ASN VAL GLN SER TYR HIS VAL ARG ASN LEU GLY SEQRES 6 B 171 TRP CYS ASP VAL GLY TYR ASN PHE LEU ILE GLY GLU ASP SEQRES 7 B 171 GLY LEU VAL TYR GLU GLY ARG GLY TRP ASN ILE LYS GLY SEQRES 8 B 171 ALA HIS ALA GLY PRO THR TRP ASN PRO ILE SER ILE GLY SEQRES 9 B 171 ILE SER PHE MET GLY ASN TYR MET ASN ARG VAL PRO PRO SEQRES 10 B 171 PRO ARG ALA LEU ARG ALA ALA GLN ASN LEU LEU ALA CYS SEQRES 11 B 171 GLY VAL ALA LEU GLY ALA LEU ARG SER ASN TYR GLU VAL SEQRES 12 B 171 LYS GLY HIS ARG ASP VAL GLN PRO THR LEU SER PRO GLY SEQRES 13 B 171 ASP ARG LEU TYR GLU ILE ILE GLN THR TRP SER HIS TYR SEQRES 14 B 171 ARG ALA SEQRES 1 C 171 GLU ASP PRO PRO ALA CYS GLY SER ILE VAL PRO ARG ARG SEQRES 2 C 171 GLU TRP ARG ALA LEU ALA SER GLU CYS ARG GLU ARG LEU SEQRES 3 C 171 THR ARG PRO VAL ARG TYR VAL VAL VAL SER HIS THR ALA SEQRES 4 C 171 GLY SER HIS CYS ASP THR PRO ALA SER CYS ALA GLN GLN SEQRES 5 C 171 ALA GLN ASN VAL GLN SER TYR HIS VAL ARG ASN LEU GLY SEQRES 6 C 171 TRP CYS ASP VAL GLY TYR ASN PHE LEU ILE GLY GLU ASP SEQRES 7 C 171 GLY LEU VAL TYR GLU GLY ARG GLY TRP ASN ILE LYS GLY SEQRES 8 C 171 ALA HIS ALA GLY PRO THR TRP ASN PRO ILE SER ILE GLY SEQRES 9 C 171 ILE SER PHE MET GLY ASN TYR MET ASN ARG VAL PRO PRO SEQRES 10 C 171 PRO ARG ALA LEU ARG ALA ALA GLN ASN LEU LEU ALA CYS SEQRES 11 C 171 GLY VAL ALA LEU GLY ALA LEU ARG SER ASN TYR GLU VAL SEQRES 12 C 171 LYS GLY HIS ARG ASP VAL GLN PRO THR LEU SER PRO GLY SEQRES 13 C 171 ASP ARG LEU TYR GLU ILE ILE GLN THR TRP SER HIS TYR SEQRES 14 C 171 ARG ALA SEQRES 1 D 171 GLU ASP PRO PRO ALA CYS GLY SER ILE VAL PRO ARG ARG SEQRES 2 D 171 GLU TRP ARG ALA LEU ALA SER GLU CYS ARG GLU ARG LEU SEQRES 3 D 171 THR ARG PRO VAL ARG TYR VAL VAL VAL SER HIS THR ALA SEQRES 4 D 171 GLY SER HIS CYS ASP THR PRO ALA SER CYS ALA GLN GLN SEQRES 5 D 171 ALA GLN ASN VAL GLN SER TYR HIS VAL ARG ASN LEU GLY SEQRES 6 D 171 TRP CYS ASP VAL GLY TYR ASN PHE LEU ILE GLY GLU ASP SEQRES 7 D 171 GLY LEU VAL TYR GLU GLY ARG GLY TRP ASN ILE LYS GLY SEQRES 8 D 171 ALA HIS ALA GLY PRO THR TRP ASN PRO ILE SER ILE GLY SEQRES 9 D 171 ILE SER PHE MET GLY ASN TYR MET ASN ARG VAL PRO PRO SEQRES 10 D 171 PRO ARG ALA LEU ARG ALA ALA GLN ASN LEU LEU ALA CYS SEQRES 11 D 171 GLY VAL ALA LEU GLY ALA LEU ARG SER ASN TYR GLU VAL SEQRES 12 D 171 LYS GLY HIS ARG ASP VAL GLN PRO THR LEU SER PRO GLY SEQRES 13 D 171 ASP ARG LEU TYR GLU ILE ILE GLN THR TRP SER HIS TYR SEQRES 14 D 171 ARG ALA
HET TRE B 172 23 HET TRE A 172 23 HET TLA C 172 10
HETNAM TRE TREHALOSE HETNAM TLA L(+)-TARTARIC ACID
HETSYN TRE ALPHA-D-GLUCOPYRANOSYL-ALPHA-D-GLUCOPYRANOSIDE
FORMUL 5 TRE 2(C12 H22 O11) FORMUL 7 TLA C4 H6 O6
HELIX 1 1 THR A 45 ASN A 63 1 19 HELIX 2 2 PRO A 117 LEU A 134 1 18 HELIX 3 3 ARG A 147 VAL A 149 5 3 HELIX 4 4 GLY A 156 GLN A 164 1 9 HELIX 5 5 THR B 45 ARG B 62 1 18 HELIX 6 6 PRO B 117 GLY B 135 1 19 HELIX 7 7 HIS B 146 GLN B 150 1 5 HELIX 8 8 GLY B 156 ILE B 163 1 8 HELIX 9 9 PRO C 11 ARG C 16 1 6 HELIX 10 10 THR C 45 ARG C 62 1 18 HELIX 11 11 TRP C 98 PRO C 100 5 3 HELIX 12 12 PRO C 117 GLY C 135 1 19 HELIX 13 13 GLY C 156 GLN C 164 1 9 HELIX 14 14 ARG D 12 ARG D 16 5 5 HELIX 15 15 THR D 45 ASN D 63 1 19 HELIX 16 16 ALA D 94 ASN D 99 1 6 HELIX 17 17 PRO D 117 LEU D 134 1 18 HELIX 18 18 ARG D 147 VAL D 149 5 3 HELIX 19 19 GLY D 156 GLN D 164 1 9
SHEET 1 A 6 ILE A 9 VAL A 10 0 SHEET 2 A 6 VAL A 81 GLU A 83 1 O VAL A 81 N VAL A 10 SHEET 3 A 6 PHE A 73 ILE A 75 -1 N LEU A 74 O TYR A 82 SHEET 4 A 6 SER A 102 PHE A 107 1 O SER A 106 N ILE A 75 SHEET 5 A 6 VAL A 30 HIS A 37 1 N TYR A 32 O ILE A 103 SHEET 6 A 6 LEU A 137 GLY A 145 1 O LYS A 144 N VAL A 33 SHEET 1 B 6 ILE B 9 VAL B 10 0 SHEET 2 B 6 VAL B 81 GLU B 83 1 O VAL B 81 N VAL B 10 SHEET 3 B 6 PHE B 73 ILE B 75 -1 N LEU B 74 O TYR B 82 SHEET 4 B 6 SER B 102 PHE B 107 1 O SER B 106 N ILE B 75 SHEET 5 B 6 VAL B 30 HIS B 37 1 N VAL B 34 O ILE B 103 SHEET 6 B 6 LEU B 137 GLY B 145 1 O GLU B 142 N ARG B 31 SHEET 1 C 6 ILE C 9 VAL C 10 0 SHEET 2 C 6 VAL C 81 GLU C 83 1 O VAL C 81 N VAL C 10 SHEET 3 C 6 PHE C 73 ILE C 75 -1 N LEU C 74 O TYR C 82 SHEET 4 C 6 SER C 102 PHE C 107 1 O SER C 106 N ILE C 75 SHEET 5 C 6 VAL C 30 HIS C 37 1 N VAL C 34 O ILE C 103 SHEET 6 C 6 LEU C 137 GLY C 145 1 O LYS C 144 N VAL C 35 SHEET 1 D 6 ILE D 9 VAL D 10 0 SHEET 2 D 6 VAL D 81 GLU D 83 1 O VAL D 81 N VAL D 10 SHEET 3 D 6 PHE D 73 ILE D 75 -1 N LEU D 74 O TYR D 82 SHEET 4 D 6 SER D 102 PHE D 107 1 O SER D 106 N ILE D 75 SHEET 5 D 6 VAL D 30 HIS D 37 1 N SER D 36 O ILE D 105 SHEET 6 D 6 LEU D 137 GLY D 145 1 O ARG D 138 N VAL D 30
SSBOND 1 CYS A 6 CYS A 130 1555 1555 2.04 SSBOND 2 CYS A 22 CYS A 67 1555 1555 2.02 SSBOND 3 CYS A 43 CYS A 49 1555 1555 2.03 SSBOND 4 CYS B 6 CYS B 130 1555 1555 2.04 SSBOND 5 CYS B 22 CYS B 67 1555 1555 2.04 SSBOND 6 CYS B 43 CYS B 49 1555 1555 2.02 SSBOND 7 CYS C 6 CYS C 130 1555 1555 2.01 SSBOND 8 CYS C 22 CYS C 67 1555 1555 2.02 SSBOND 9 CYS C 43 CYS C 49 1555 1555 2.02 SSBOND 10 CYS D 6 CYS D 130 1555 1555 2.04 SSBOND 11 CYS D 22 CYS D 67 1555 1555 2.04 SSBOND 12 CYS D 43 CYS D 49 1555 1555 2.02
CISPEP 1 ARG A 28 PRO A 29 0 2.34 CISPEP 2 ARG B 28 PRO B 29 0 0.30 CISPEP 3 SER B 154 PRO B 155 0 -15.80 CISPEP 4 ARG C 28 PRO C 29 0 0.25 CISPEP 5 SER C 154 PRO C 155 0 0.04 CISPEP 6 ARG D 28 PRO D 29 0 0.11 CISPEP 7 SER D 154 PRO D 155 0 -5.54
SITE 1 AC1 9 HIS B 37 ALA B 39 PRO B 151 THR B 152 SITE 2 AC1 9 LEU B 153 SER B 154 GLU C 1 ASP C 2 SITE 3 AC1 9 PRO C 3 SITE 1 AC2 8 HIS A 37 THR A 38 ALA A 39 TYR A 71 SITE 2 AC2 8 HIS A 146 PRO A 151 THR A 152 SER A 154 SITE 1 AC3 9 HIS C 37 THR C 152 LEU C 153 SER C 154 SITE 2 AC3 9 HIS D 37 ALA D 39 THR D 152 LEU D 153 SITE 3 AC3 9 SER D 154
CRYST1 89.640 102.390 163.740 90.00 90.00 90.00 I 2 2 2 32
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 0.011156 0.000000 0.000000 0.00000
SCALE2 0.000000 0.009767 0.000000 0.00000
SCALE3 0.000000 0.000000 0.006107 0.00000