10 20 30 40 50 60 70 80 3CX3 - Header ----|----|----|----|----|----|----|----|----|----|----|----|----|----|----|----| Asymmetric UnitHEADER METAL BINDING PROTEIN 23-APR-08 3CX3
TITLE CRYSTAL STRUCTURE ANALYSIS OF THE STREPTOCOCCUS PNEUMONIAE TITLE 2 ADCAII PROTEIN
COMPND MOL_ID: 1; COMPND 2 MOLECULE: LIPOPROTEIN; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: ADCAII, ADHESION LIPOPROTEIN; COMPND 5 ENGINEERED: YES
SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: STREPTOCOCCUS PNEUMONIAE; SOURCE 3 ORGANISM_TAXID: 171101; SOURCE 4 STRAIN: R6; SOURCE 5 GENE: LMB, SPR0906; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PLIM01
KEYWDS ZINC-BINDING, LIPOPROTEIN, TRANSPORT, LIPID BINDING PROTEIN, KEYWDS 2 METAL BINDING PROTEIN
EXPDTA X-RAY DIFFRACTION
AUTHOR E.LOISEL,C.DURMORT,L.JACQUAMET
REVDAT 3 24-FEB-09 3CX3 1 VERSN REVDAT 2 12-AUG-08 3CX3 1 JRNL REVDAT 1 05-AUG-08 3CX3 0
JRNL AUTH E.LOISEL,L.JACQUAMET,L.SERRE,C.BAUVOIS,J.L.FERRER, JRNL AUTH 2 T.VERNET,A.M.DI GUILMI,C.DURMORT JRNL TITL ADCAII, A NEW PNEUMOCOCCAL ZN-BINDING PROTEIN JRNL TITL 2 HOMOLOGOUS WITH ABC TRANSPORTERS: BIOCHEMICAL AND JRNL TITL 3 STRUCTURAL ANALYSIS. JRNL REF J.MOL.BIOL. V. 381 594 2008 JRNL REFN ISSN 0022-2836 JRNL PMID 18632116 JRNL DOI 10.1016/J.JMB.2008.05.068
REMARK 1
REMARK 2 REMARK 2 RESOLUTION. 2.40 ANGSTROMS.
REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.40 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 44.90 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 21262 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.229 REMARK 3 R VALUE (WORKING SET) : 0.225 REMARK 3 FREE R VALUE : 0.295 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1064 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.40 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.46 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1307 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.00 REMARK 3 BIN R VALUE (WORKING SET) : 0.2790 REMARK 3 BIN FREE R VALUE SET COUNT : 69 REMARK 3 BIN FREE R VALUE : 0.3910 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4132 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 4 REMARK 3 SOLVENT ATOMS : 144 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 13.30 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 56.20 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 4.85000 REMARK 3 B22 (A**2) : -3.72000 REMARK 3 B33 (A**2) : -1.13000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.332 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): NULL REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): NULL REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.935 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.891 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4219 ; 0.012 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5702 ; 1.722 ; 1.968 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 526 ;11.037 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 183 ;43.004 ;26.066 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 777 ;22.167 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 8 ;22.113 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 643 ; 0.172 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3122 ; 0.005 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 2321 ; 0.283 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 2826 ; 0.315 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 206 ; 0.215 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): 4 ; 0.176 ; 0.200 REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 46 ; 0.274 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 6 ; 0.165 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2633 ; 1.602 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 4261 ; 2.841 ; 2.000 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1586 ; 2.481 ; 3.000 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1440 ; 4.143 ; 4.500 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL
REMARK 4 REMARK 4 3CX3 COMPLIES WITH FORMAT V. 3.15, 01-DEC-08
REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 08-MAY-08. REMARK 100 THE RCSB ID CODE IS RCSB047318.
REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 19-JUN-07 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : BM30A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.971968, 0.979648, 0.979896 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 38743 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.400 REMARK 200 RESOLUTION RANGE LOW (A) : 44.900 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 95.6 REMARK 200 DATA REDUNDANCY : 3.700 REMARK 200 R MERGE (I) : 0.04400 REMARK 200 R SYM (I) : 0.07100 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 12.9100 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.40 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.50 REMARK 200 COMPLETENESS FOR SHELL (%) : 66.9 REMARK 200 DATA REDUNDANCY IN SHELL : 3.60 REMARK 200 R MERGE FOR SHELL (I) : 0.53000 REMARK 200 R SYM FOR SHELL (I) : 0.52000 REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.400 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: SHARP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL
REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 41.34 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.10 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG 2000, NACL, CITRIC ACID, PH REMARK 280 4.0, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K
REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 27.88000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 75.83000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 31.63000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 75.83000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 27.88000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 31.63000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL
REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA.
REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000
REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 28 REMARK 465 GLN A 29 REMARK 465 LYS A 30 REMARK 465 GLU A 31 REMARK 465 SER A 32 REMARK 465 GLN A 33 REMARK 465 LEU A 129 REMARK 465 GLU A 130 REMARK 465 ASP A 131 REMARK 465 VAL A 132 REMARK 465 GLU A 133 REMARK 465 ALA A 134 REMARK 465 GLY A 135 REMARK 465 ASP A 136 REMARK 465 GLY A 137 REMARK 465 VAL A 138 REMARK 465 ASP A 139 REMARK 465 GLU A 140 REMARK 465 LYS A 141 REMARK 465 LYS A 311 REMARK 465 GLY B 28 REMARK 465 GLN B 29 REMARK 465 LYS B 30 REMARK 465 GLU B 31 REMARK 465 SER B 32 REMARK 465 GLN B 33 REMARK 465 THR B 34 REMARK 465 GLY B 35 REMARK 465 LEU B 129 REMARK 465 GLU B 130 REMARK 465 ASP B 131 REMARK 465 VAL B 132 REMARK 465 GLU B 133 REMARK 465 ALA B 134 REMARK 465 GLY B 135 REMARK 465 ASP B 136 REMARK 465 GLY B 137 REMARK 465 VAL B 138 REMARK 465 ASP B 139 REMARK 465 GLU B 140 REMARK 465 LYS B 141 REMARK 465 SER B 265 REMARK 465 LYS B 266 REMARK 465 GLN B 290
REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS(M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 THR A 142 OG1 REMARK 470 LYS A 253 CG CD CE NZ REMARK 470 GLU A 308 OE1 OE2 REMARK 470 GLU A 309 OE1 OE2 REMARK 470 THR B 142 CB OG1 CG2 REMARK 470 ASN B 291 CG OD1 ND2 REMARK 470 ASP B 292 CG OD1 OD2 REMARK 470 LEU B 310 CD1 CD2
REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE2 GLU B 286 ZN ZN B 312 1.69 REMARK 500 O THR B 192 NE2 GLN B 196 1.82 REMARK 500 C THR B 192 NE2 GLN B 196 1.94 REMARK 500 OE1 GLU A 53 O HOH A 382 2.08 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LEU A 282 CA - CB - CG ANGL. DEV. = 15.1 DEGREES REMARK 500 SER B 118 N - CA - C ANGL. DEV. = 26.4 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 36 -68.48 178.82 REMARK 500 GLN A 65 50.22 22.16 REMARK 500 SER A 67 141.61 84.70 REMARK 500 SER A 68 -64.04 162.15 REMARK 500 LEU A 96 -77.87 -122.58 REMARK 500 ALA A 100 -53.40 141.04 REMARK 500 SER A 102 -13.88 92.56 REMARK 500 LEU A 107 -48.18 164.69 REMARK 500 LYS A 111 23.80 -142.81 REMARK 500 PRO A 127 -167.83 -62.82 REMARK 500 TRP A 149 -15.37 -45.74 REMARK 500 LYS A 201 -9.03 -55.11 REMARK 500 ALA A 202 -108.75 48.74 REMARK 500 THR A 203 46.30 78.15 REMARK 500 GLN A 204 91.40 47.60 REMARK 500 LYS A 205 -79.18 46.06 REMARK 500 LEU A 217 -70.42 -57.24 REMARK 500 PRO A 237 -104.83 -37.92 REMARK 500 SER A 238 -58.35 -161.49 REMARK 500 LYS A 253 67.55 61.29 REMARK 500 SER A 261 -71.98 -69.25 REMARK 500 ASN A 262 81.30 -1.03 REMARK 500 SER A 264 56.13 -57.12 REMARK 500 GLU A 269 -52.94 -29.38 REMARK 500 THR A 270 48.29 -79.34 REMARK 500 LEU A 271 -29.64 -147.75 REMARK 500 LYS A 273 35.81 -67.35 REMARK 500 SER A 274 -129.40 -147.23 REMARK 500 GLN A 290 -84.28 5.28 REMARK 500 ASN A 291 -159.79 50.66 REMARK 500 LYS A 293 147.58 -31.84 REMARK 500 THR A 294 -176.19 -66.72 REMARK 500 GLU A 309 53.03 -69.40 REMARK 500 GLN B 65 68.94 -107.82 REMARK 500 LEU B 96 -71.87 -118.88 REMARK 500 ASN B 106 59.02 -66.67 REMARK 500 LEU B 107 58.53 86.93 REMARK 500 LYS B 111 65.55 -110.39 REMARK 500 LYS B 113 87.29 29.86 REMARK 500 SER B 118 -84.53 89.85 REMARK 500 GLU B 119 79.18 32.65 REMARK 500 VAL B 126 -101.89 -83.24 REMARK 500 HIS B 147 49.91 -88.07 REMARK 500 SER B 167 -10.53 82.59 REMARK 500 LYS B 174 176.38 -56.66 REMARK 500 GLU B 175 -40.96 67.40 REMARK 500 TYR B 177 -67.34 68.98 REMARK 500 ASN B 180 -47.33 112.44 REMARK 500 LYS B 253 -56.15 105.02 REMARK 500 VAL B 254 106.38 8.65 REMARK 500 SER B 261 -113.32 -140.69 REMARK 500 ALA B 263 84.02 -57.84 REMARK 500 ASP B 292 -21.38 -141.61 REMARK 500 THR B 294 135.64 36.34 REMARK 500 TYR B 295 -70.27 -54.51 REMARK 500 GLU B 308 0.99 -58.70 REMARK 500 GLU B 309 168.77 86.71 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 PRO A 127 GLY A 128 -139.46 REMARK 500 GLN A 204 LYS A 205 139.95 REMARK 500 SER A 264 SER A 265 140.43 REMARK 500 PRO A 289 GLN A 290 -131.93 REMARK 500 LEU B 107 LYS B 108 136.67 REMARK 500 ALA B 117 SER B 118 55.15 REMARK 500 SER B 118 GLU B 119 106.82 REMARK 500 GLU B 175 THR B 176 144.32 REMARK 500 REMARK 500 REMARK: NULL
REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 359 DISTANCE = 5.04 ANGSTROMS
REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 314 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 71 NE2 REMARK 620 2 HIS A 147 NE2 114.3 REMARK 620 3 HIS A 211 NE2 118.7 110.7 REMARK 620 4 GLU A 286 OE2 121.2 98.0 90.1 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 312 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 71 NE2 REMARK 620 2 HIS B 211 NE2 121.1 REMARK 620 N 1
REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA A 313 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 314 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN B 312
DBREF 3CX3 A 28 311 UNP Q8DQ09 Q8DQ09_STRR6 28 311 DBREF 3CX3 B 28 311 UNP Q8DQ09 Q8DQ09_STRR6 28 311
SEQRES 1 A 284 GLY GLN LYS GLU SER GLN THR GLY LYS GLY MSE LYS ILE SEQRES 2 A 284 VAL THR SER PHE TYR PRO ILE TYR ALA MSE VAL LYS GLU SEQRES 3 A 284 VAL SER GLY ASP LEU ASN ASP VAL ARG MSE ILE GLN SER SEQRES 4 A 284 SER SER GLY ILE HIS SER PHE GLU PRO SER ALA ASN ASP SEQRES 5 A 284 ILE ALA ALA ILE TYR ASP ALA ASP VAL PHE VAL TYR HIS SEQRES 6 A 284 SER HIS THR LEU GLU SER TRP ALA GLY SER LEU ASP PRO SEQRES 7 A 284 ASN LEU LYS LYS SER LYS VAL LYS VAL LEU GLU ALA SER SEQRES 8 A 284 GLU GLY MSE THR LEU GLU ARG VAL PRO GLY LEU GLU ASP SEQRES 9 A 284 VAL GLU ALA GLY ASP GLY VAL ASP GLU LYS THR LEU TYR SEQRES 10 A 284 ASP PRO HIS THR TRP LEU ASP PRO GLU LYS ALA GLY GLU SEQRES 11 A 284 GLU ALA GLN ILE ILE ALA ASP LYS LEU SER GLU VAL ASP SEQRES 12 A 284 SER GLU HIS LYS GLU THR TYR GLN LYS ASN ALA GLN ALA SEQRES 13 A 284 PHE ILE LYS LYS ALA GLN GLU LEU THR LYS LYS PHE GLN SEQRES 14 A 284 PRO LYS PHE GLU LYS ALA THR GLN LYS THR PHE VAL THR SEQRES 15 A 284 GLN HIS THR ALA PHE SER TYR LEU ALA LYS ARG PHE GLY SEQRES 16 A 284 LEU ASN GLN LEU GLY ILE ALA GLY ILE SER PRO GLU GLN SEQRES 17 A 284 GLU PRO SER PRO ARG GLN LEU THR GLU ILE GLN GLU PHE SEQRES 18 A 284 VAL LYS THR TYR LYS VAL LYS THR ILE PHE THR GLU SER SEQRES 19 A 284 ASN ALA SER SER LYS VAL ALA GLU THR LEU VAL LYS SER SEQRES 20 A 284 THR GLY VAL GLY LEU LYS THR LEU ASN PRO LEU GLU SER SEQRES 21 A 284 ASP PRO GLN ASN ASP LYS THR TYR LEU GLU ASN LEU GLU SEQRES 22 A 284 GLU ASN MSE SER ILE LEU ALA GLU GLU LEU LYS SEQRES 1 B 284 GLY GLN LYS GLU SER GLN THR GLY LYS GLY MSE LYS ILE SEQRES 2 B 284 VAL THR SER PHE TYR PRO ILE TYR ALA MSE VAL LYS GLU SEQRES 3 B 284 VAL SER GLY ASP LEU ASN ASP VAL ARG MSE ILE GLN SER SEQRES 4 B 284 SER SER GLY ILE HIS SER PHE GLU PRO SER ALA ASN ASP SEQRES 5 B 284 ILE ALA ALA ILE TYR ASP ALA ASP VAL PHE VAL TYR HIS SEQRES 6 B 284 SER HIS THR LEU GLU SER TRP ALA GLY SER LEU ASP PRO SEQRES 7 B 284 ASN LEU LYS LYS SER LYS VAL LYS VAL LEU GLU ALA SER SEQRES 8 B 284 GLU GLY MSE THR LEU GLU ARG VAL PRO GLY LEU GLU ASP SEQRES 9 B 284 VAL GLU ALA GLY ASP GLY VAL ASP GLU LYS THR LEU TYR SEQRES 10 B 284 ASP PRO HIS THR TRP LEU ASP PRO GLU LYS ALA GLY GLU SEQRES 11 B 284 GLU ALA GLN ILE ILE ALA ASP LYS LEU SER GLU VAL ASP SEQRES 12 B 284 SER GLU HIS LYS GLU THR TYR GLN LYS ASN ALA GLN ALA SEQRES 13 B 284 PHE ILE LYS LYS ALA GLN GLU LEU THR LYS LYS PHE GLN SEQRES 14 B 284 PRO LYS PHE GLU LYS ALA THR GLN LYS THR PHE VAL THR SEQRES 15 B 284 GLN HIS THR ALA PHE SER TYR LEU ALA LYS ARG PHE GLY SEQRES 16 B 284 LEU ASN GLN LEU GLY ILE ALA GLY ILE SER PRO GLU GLN SEQRES 17 B 284 GLU PRO SER PRO ARG GLN LEU THR GLU ILE GLN GLU PHE SEQRES 18 B 284 VAL LYS THR TYR LYS VAL LYS THR ILE PHE THR GLU SER SEQRES 19 B 284 ASN ALA SER SER LYS VAL ALA GLU THR LEU VAL LYS SER SEQRES 20 B 284 THR GLY VAL GLY LEU LYS THR LEU ASN PRO LEU GLU SER SEQRES 21 B 284 ASP PRO GLN ASN ASP LYS THR TYR LEU GLU ASN LEU GLU SEQRES 22 B 284 GLU ASN MSE SER ILE LEU ALA GLU GLU LEU LYS
MODRES 3CX3 MSE A 38 MET SELENOMETHIONINE MODRES 3CX3 MSE A 50 MET SELENOMETHIONINE MODRES 3CX3 MSE A 63 MET SELENOMETHIONINE MODRES 3CX3 MSE A 121 MET SELENOMETHIONINE MODRES 3CX3 MSE A 303 MET SELENOMETHIONINE MODRES 3CX3 MSE B 38 MET SELENOMETHIONINE MODRES 3CX3 MSE B 50 MET SELENOMETHIONINE MODRES 3CX3 MSE B 63 MET SELENOMETHIONINE MODRES 3CX3 MSE B 121 MET SELENOMETHIONINE MODRES 3CX3 MSE B 303 MET SELENOMETHIONINE
HET MSE A 38 8 HET MSE A 50 8 HET MSE A 63 8 HET MSE A 121 8 HET MSE A 303 8 HET MSE B 38 8 HET MSE B 50 8 HET MSE B 63 8 HET MSE B 121 8 HET MSE B 303 8 HET NA A 312 1 HET NA A 313 1 HET ZN A 314 1 HET ZN B 312 1
HETNAM MSE SELENOMETHIONINE HETNAM NA SODIUM ION HETNAM ZN ZINC ION
FORMUL 1 MSE 10(C5 H11 N O2 SE) FORMUL 3 NA 2(NA 1+) FORMUL 5 ZN 2(ZN 2+) FORMUL 7 HOH *144(H2 O)
HELIX 1 1 PHE A 44 GLY A 56 1 13 HELIX 2 2 SER A 76 ALA A 86 1 11 HELIX 3 3 HIS A 147 LEU A 150 5 4 HELIX 4 4 ASP A 151 ASP A 170 1 20 HELIX 5 5 HIS A 173 LYS A 201 1 29 HELIX 6 6 PHE A 214 PHE A 221 1 8 HELIX 7 7 PRO A 239 TYR A 252 1 14 HELIX 8 8 SER A 265 LYS A 273 1 9 HELIX 9 9 THR A 294 GLU A 309 1 16 HELIX 10 10 PHE B 44 GLY B 56 1 13 HELIX 11 11 ASP B 57 ASN B 59 5 3 HELIX 12 12 SER B 76 ALA B 86 1 11 HELIX 13 13 GLU B 97 SER B 102 5 6 HELIX 14 14 HIS B 147 LEU B 150 5 4 HELIX 15 15 ASP B 151 LEU B 166 1 16 HELIX 16 16 GLN B 178 PHE B 199 1 22 HELIX 17 17 PHE B 214 PHE B 221 1 8 HELIX 18 18 SER B 238 LYS B 253 1 16 HELIX 19 19 SER B 264 SER B 264 1 1 HELIX 20 20 VAL B 267 THR B 275 1 9 HELIX 21 21 THR B 294 GLU B 308 1 15
SHEET 1 A 4 ASP A 60 MSE A 63 0 SHEET 2 A 4 LYS A 39 THR A 42 1 N ILE A 40 O ASP A 60 SHEET 3 A 4 VAL A 88 TYR A 91 1 O VAL A 88 N VAL A 41 SHEET 4 A 4 LYS A 113 GLU A 116 1 O LEU A 115 N PHE A 89 SHEET 1 B 4 GLN A 225 ALA A 229 0 SHEET 2 B 4 PHE A 207 HIS A 211 1 N THR A 209 O ILE A 228 SHEET 3 B 4 ILE A 257 THR A 259 1 O PHE A 258 N VAL A 208 SHEET 4 B 4 LEU A 279 THR A 281 1 O LYS A 280 N ILE A 257 SHEET 1 C 4 ASP B 60 MSE B 63 0 SHEET 2 C 4 LYS B 39 THR B 42 1 N ILE B 40 O ASP B 60 SHEET 3 C 4 VAL B 88 TYR B 91 1 O VAL B 88 N VAL B 41 SHEET 4 C 4 VAL B 114 GLU B 116 1 O LEU B 115 N PHE B 89 SHEET 1 D 4 ASN B 224 GLY B 227 0 SHEET 2 D 4 THR B 206 THR B 209 1 N PHE B 207 O ASN B 224 SHEET 3 D 4 THR B 256 THR B 259 1 O PHE B 258 N VAL B 208 SHEET 4 D 4 GLY B 278 THR B 281 1 O LYS B 280 N THR B 259
LINK C GLY A 37 N MSE A 38 1555 1555 1.33 LINK C MSE A 38 N LYS A 39 1555 1555 1.33 LINK C ALA A 49 N MSE A 50 1555 1555 1.32 LINK C MSE A 50 N VAL A 51 1555 1555 1.33 LINK C ARG A 62 N MSE A 63 1555 1555 1.33 LINK C MSE A 63 N ILE A 64 1555 1555 1.34 LINK C GLY A 120 N MSE A 121 1555 1555 1.33 LINK C MSE A 121 N THR A 122 1555 1555 1.32 LINK C ASN A 302 N MSE A 303 1555 1555 1.33 LINK C MSE A 303 N SER A 304 1555 1555 1.34 LINK C GLY B 37 N MSE B 38 1555 1555 1.34 LINK C MSE B 38 N LYS B 39 1555 1555 1.33 LINK C ALA B 49 N MSE B 50 1555 1555 1.33 LINK C MSE B 50 N VAL B 51 1555 1555 1.33 LINK C ARG B 62 N MSE B 63 1555 1555 1.33 LINK C MSE B 63 N ILE B 64 1555 1555 1.34 LINK C GLY B 120 N MSE B 121 1555 1555 1.33 LINK C MSE B 121 N THR B 122 1555 1555 1.32 LINK C ASN B 302 N MSE B 303 1555 1555 1.33 LINK C MSE B 303 N SER B 304 1555 1555 1.33 LINK NE2 HIS A 71 ZN ZN A 314 1555 1555 2.00 LINK NE2 HIS A 147 ZN ZN A 314 1555 1555 2.04 LINK NE2 HIS A 211 ZN ZN A 314 1555 1555 2.08 LINK OE2 GLU A 286 ZN ZN A 314 1555 1555 2.08 LINK NE2 HIS B 71 ZN ZN B 312 1555 1555 1.95 LINK NE2 HIS B 211 ZN ZN B 312 1555 1555 2.36
CISPEP 1 SER A 238 PRO A 239 0 17.51 CISPEP 2 ASN B 291 ASP B 292 0 26.32
SITE 1 AC1 2 HIS A 173 THR A 176 SITE 1 AC2 5 HIS A 71 HIS A 147 HIS A 211 ILE A 231 SITE 2 AC2 5 GLU A 286 SITE 1 AC3 5 HIS B 71 HIS B 147 HIS B 211 ILE B 231 SITE 2 AC3 5 GLU B 286
CRYST1 55.760 63.260 151.660 90.00 90.00 90.00 P 21 21 21 8
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 0.017934 0.000000 0.000000 0.00000
SCALE2 0.000000 0.015808 0.000000 0.00000
SCALE3 0.000000 0.000000 0.006594 0.00000