3CVY - Header Asymmetric Unit

HEADER LYASE/DNA 20-APR-08 3CVY

TITLE DROSOPHILA MELANOGASTER (6-4) PHOTOLYASE BOUND TO REPAIRED TITLE 2 DS DNA

COMPND MOL_ID: 1; COMPND 2 MOLECULE: RE11660P; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: DNA (5'- COMPND 7 D(*DAP*DCP*DAP*DGP*DCP*DGP*DGP*DTP*DTP*DGP*DCP*DAP*DGP*DGP* COMPND 8 DT)-3'); COMPND 9 CHAIN: C; COMPND 10 ENGINEERED: YES; COMPND 11 MOL_ID: 3; COMPND 12 MOLECULE: DNA (5'- COMPND 13 D(*DTP*DAP*DCP*DCP*DTP*DGP*DCP*DAP*DAP*DCP*DCP*DGP*DCP*DTP* COMPND 14 DG)-3'); COMPND 15 CHAIN: D; COMPND 16 ENGINEERED: YES

SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: DROSOPHILA MELANOGASTER; SOURCE 3 ORGANISM_TAXID: 7227; SOURCE 4 GENE: PHR64-520; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: ROSETTA-GAMI PLYSS (DE-3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: DERIVED FROM PDEST007; SOURCE 10 MOL_ID: 2; SOURCE 11 SYNTHETIC: YES; SOURCE 12 MOL_ID: 3; SOURCE 13 SYNTHETIC: YES

KEYWDS DNA REPAIR, LYASE/DNA COMPLEX

EXPDTA X-RAY DIFFRACTION

AUTHOR M.J.MAUL,T.R.M.BARENDS,A.F.GLAS,M.J.CRYLE,I.SCHLICHTING, AUTHOR 2 T.CARELL

REVDAT 4 09-JUN-09 3CVY 1 REVDAT REVDAT 3 24-FEB-09 3CVY 1 VERSN REVDAT 2 30-DEC-08 3CVY 1 JRNL REVDAT 1 04-NOV-08 3CVY 0

JRNL AUTH M.J.MAUL,T.R.BARENDS,A.F.GLAS,M.J.CRYLE, JRNL AUTH 2 T.DOMRATCHEVA,S.SCHNEIDER,I.SCHLICHTING,T.CARELL JRNL TITL CRYSTAL STRUCTURE AND MECHANISM OF A DNA (6-4) JRNL TITL 2 PHOTOLYASE. JRNL REF ANGEW.CHEM.INT.ED.ENGL. V. 47 10076 2008 JRNL REFN ISSN 1433-7851 JRNL PMID 18956392 JRNL DOI 10.1002/ANIE.200804268

REMARK 1

REMARK 2 REMARK 2 RESOLUTION. 2.70 ANGSTROMS.

REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0005 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 39.53 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 17285 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.215 REMARK 3 R VALUE (WORKING SET) : 0.212 REMARK 3 FREE R VALUE : 0.266 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900 REMARK 3 FREE R VALUE TEST SET COUNT : 886 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.70 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.77 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1245 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.77 REMARK 3 BIN R VALUE (WORKING SET) : 0.3040 REMARK 3 BIN FREE R VALUE SET COUNT : 58 REMARK 3 BIN FREE R VALUE : 0.3880 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4110 REMARK 3 NUCLEIC ACID ATOMS : 609 REMARK 3 HETEROGEN ATOMS : 53 REMARK 3 SOLVENT ATOMS : 9 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 58.70 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 43.11 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.21000 REMARK 3 B22 (A**2) : -3.46000 REMARK 3 B33 (A**2) : 3.25000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.384 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.270 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 13.273 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.927 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.885 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4973 ; 0.007 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 4140 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 6882 ; 1.112 ; 2.121 REMARK 3 BOND ANGLES OTHERS (DEGREES): 9686 ; 0.776 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 500 ; 5.808 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 205 ;34.164 ;22.976 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 723 ;15.460 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 35 ;11.373 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 724 ; 0.059 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4993 ; 0.000 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 905 ; 0.000 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1114 ; 0.190 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 4330 ; 0.170 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 2353 ; 0.186 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): 2546 ; 0.079 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 106 ; 0.138 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 7 ; 0.170 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 43 ; 0.237 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 4 ; 0.194 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 3276 ; 0.476 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 996 ; 0.042 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 4071 ; 0.514 ; 2.000 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 3160 ; 0.619 ; 3.000 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 2811 ; 1.120 ; 4.500 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE REMARK 3 RIDING POSITIONS

REMARK 4 REMARK 4 3CVY COMPLIES WITH FORMAT V. 3.15, 01-DEC-08

REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 15-MAY-08. REMARK 100 THE RCSB ID CODE IS RCSB047277.

REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 19-NOV-07 REMARK 200 TEMPERATURE (KELVIN) : 90 REMARK 200 PH : 8.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X10SA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97925 REMARK 200 MONOCHROMATOR : SI(111) REMARK 200 OPTICS : DYNAMICALLY BENDABLE MIRROR REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 225 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 17459 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.700 REMARK 200 RESOLUTION RANGE LOW (A) : 40.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 95.8 REMARK 200 DATA REDUNDANCY : 4.400 REMARK 200 R MERGE (I) : 0.08700 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 13.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.70 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.80 REMARK 200 COMPLETENESS FOR SHELL (%) : 90.2 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.33800 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 4.800 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: FOURIER SYNTHESIS REMARK 200 SOFTWARE USED: CNS REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL

REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 44.69 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.22 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20-25% PEG1500, 0.1 M MIB BUFFER, REMARK 280 PH 8.6, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K

REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 41.68000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 43.29500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 44.42000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 43.29500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 41.68000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 44.42000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL

REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA.

REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4820 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 24790 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -26.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, D, A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000

REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -22 REMARK 465 ALA A -21 REMARK 465 SER A -20 REMARK 465 TRP A -19 REMARK 465 SER A -18 REMARK 465 HIS A -17 REMARK 465 PRO A -16 REMARK 465 GLN A -15 REMARK 465 PHE A -14 REMARK 465 GLU A -13 REMARK 465 LYS A -12 REMARK 465 GLY A -11 REMARK 465 ALA A -10 REMARK 465 SER A -9 REMARK 465 THR A -8 REMARK 465 SER A -7 REMARK 465 LEU A -6 REMARK 465 TYR A -5 REMARK 465 LYS A -4 REMARK 465 LYS A -3 REMARK 465 ALA A -2 REMARK 465 GLY A -1 REMARK 465 LEU A 0 REMARK 465 MET A 1 REMARK 465 ASP A 2 REMARK 465 SER A 3 REMARK 465 GLN A 4 REMARK 465 THR A 506 REMARK 465 GLY A 507 REMARK 465 LYS A 508 REMARK 465 GLU A 509 REMARK 465 GLU A 510 REMARK 465 GLU A 511 REMARK 465 SER A 512 REMARK 465 SER A 513 REMARK 465 PHE A 514 REMARK 465 GLU A 515 REMARK 465 GLU A 516 REMARK 465 LYS A 517 REMARK 465 SER A 518 REMARK 465 GLU A 519 REMARK 465 THR A 520

REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 DC C 2 O4' - C1' - N1 ANGL. DEV. = 2.1 DEGREES REMARK 500 DG C 13 O4' - C1' - N9 ANGL. DEV. = 5.4 DEGREES REMARK 500 DT C 15 O4' - C1' - N1 ANGL. DEV. = 2.7 DEGREES REMARK 500 DT D 1 O4' - C1' - N1 ANGL. DEV. = 2.7 DEGREES REMARK 500 DC D 3 O4' - C1' - C2' ANGL. DEV. = -4.8 DEGREES REMARK 500 DC D 3 O4' - C1' - N1 ANGL. DEV. = 5.0 DEGREES REMARK 500 DT D 5 O4' - C4' - C3' ANGL. DEV. = -3.6 DEGREES REMARK 500 DT D 5 O4' - C1' - N1 ANGL. DEV. = 2.9 DEGREES REMARK 500 DC D 7 O4' - C4' - C3' ANGL. DEV. = -3.9 DEGREES REMARK 500 DC D 7 O4' - C1' - N1 ANGL. DEV. = 2.8 DEGREES REMARK 500 DA D 8 O4' - C1' - N9 ANGL. DEV. = 2.7 DEGREES REMARK 500 DA D 9 O4' - C1' - N9 ANGL. DEV. = 2.4 DEGREES REMARK 500 DA D 8 C3' - O3' - P ANGL. DEV. = 8.1 DEGREES REMARK 500 DC D 10 O4' - C1' - N1 ANGL. DEV. = 2.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 13 -68.39 -129.85 REMARK 500 LYS A 14 -153.11 -98.23 REMARK 500 SER A 80 -160.18 -129.23 REMARK 500 ARG A 101 73.04 49.21 REMARK 500 ASN A 151 35.69 -96.88 REMARK 500 LYS A 210 31.05 -83.95 REMARK 500 ARG A 211 48.24 -167.77 REMARK 500 HIS A 333 83.44 -156.03 REMARK 500 THR A 376 -112.11 -97.17 REMARK 500 ASP A 379 -62.19 -130.99 REMARK 500 PHE A 415 -51.99 71.84 REMARK 500 CYS A 453 15.84 -145.67 REMARK 500 TRP A 458 -2.38 -57.27 REMARK 500 CYS A 470 96.84 -162.99 REMARK 500 THR A 474 -62.61 -130.39 REMARK 500 REMARK 500 REMARK: NULL

REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FAD A 521

REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3CVU RELATED DB: PDB REMARK 900 DROSOPHILA MELANOGASTER (6-4) PHOTOLYASE BOUND TO DS DNA REMARK 900 WITH A T-T (6-4) PHOTOLESION REMARK 900 RELATED ID: 3CVV RELATED DB: PDB REMARK 900 DROSOPHILA MELANOGASTER (6-4) PHOTOLYASE BOUND TO DS DNA REMARK 900 WITH A T-T (6-4) PHOTOLESION AND F0 COFACTOR REMARK 900 RELATED ID: 3CVW RELATED DB: PDB REMARK 900 DROSOPHILA MELANOGASTER (6-4) PHOTOLYASE H365N MUTANT BOUND REMARK 900 TO DS DNA WITH A T-T (6-4) PHOTOLESION AND COFACTOR F0 REMARK 900 RELATED ID: 3CVX RELATED DB: PDB REMARK 900 DROSOPHILA MELANOGASTER (6-4) PHOTOLYASE H369M MUTANT BOUND REMARK 900 TO DS DNA WITH A T-T (6-4) PHOTOLESION

DBREF 3CVY A 1 520 UNP Q8SXK5 Q8SXK5_DROME 1 520 DBREF 3CVY C 1 15 PDB 3CVY 3CVY 1 15 DBREF 3CVY D 1 15 PDB 3CVY 3CVY 1 15

SEQADV 3CVY MET A -22 UNP Q8SXK5 EXPRESSION TAG SEQADV 3CVY ALA A -21 UNP Q8SXK5 EXPRESSION TAG SEQADV 3CVY SER A -20 UNP Q8SXK5 EXPRESSION TAG SEQADV 3CVY TRP A -19 UNP Q8SXK5 EXPRESSION TAG SEQADV 3CVY SER A -18 UNP Q8SXK5 EXPRESSION TAG SEQADV 3CVY HIS A -17 UNP Q8SXK5 EXPRESSION TAG SEQADV 3CVY PRO A -16 UNP Q8SXK5 EXPRESSION TAG SEQADV 3CVY GLN A -15 UNP Q8SXK5 EXPRESSION TAG SEQADV 3CVY PHE A -14 UNP Q8SXK5 EXPRESSION TAG SEQADV 3CVY GLU A -13 UNP Q8SXK5 EXPRESSION TAG SEQADV 3CVY LYS A -12 UNP Q8SXK5 EXPRESSION TAG SEQADV 3CVY GLY A -11 UNP Q8SXK5 EXPRESSION TAG SEQADV 3CVY ALA A -10 UNP Q8SXK5 EXPRESSION TAG SEQADV 3CVY SER A -9 UNP Q8SXK5 EXPRESSION TAG SEQADV 3CVY THR A -8 UNP Q8SXK5 EXPRESSION TAG SEQADV 3CVY SER A -7 UNP Q8SXK5 EXPRESSION TAG SEQADV 3CVY LEU A -6 UNP Q8SXK5 EXPRESSION TAG SEQADV 3CVY TYR A -5 UNP Q8SXK5 EXPRESSION TAG SEQADV 3CVY LYS A -4 UNP Q8SXK5 EXPRESSION TAG SEQADV 3CVY LYS A -3 UNP Q8SXK5 EXPRESSION TAG SEQADV 3CVY ALA A -2 UNP Q8SXK5 EXPRESSION TAG SEQADV 3CVY GLY A -1 UNP Q8SXK5 EXPRESSION TAG SEQADV 3CVY LEU A 0 UNP Q8SXK5 EXPRESSION TAG

SEQRES 1 A 543 MET ALA SER TRP SER HIS PRO GLN PHE GLU LYS GLY ALA SEQRES 2 A 543 SER THR SER LEU TYR LYS LYS ALA GLY LEU MET ASP SER SEQRES 3 A 543 GLN ARG SER THR LEU VAL HIS TRP PHE ARG LYS GLY LEU SEQRES 4 A 543 ARG LEU HIS ASP ASN PRO ALA LEU SER HIS ILE PHE THR SEQRES 5 A 543 ALA ALA ASN ALA ALA PRO GLY ARG TYR PHE VAL ARG PRO SEQRES 6 A 543 ILE PHE ILE LEU ASP PRO GLY ILE LEU ASP TRP MET GLN SEQRES 7 A 543 VAL GLY ALA ASN ARG TRP ARG PHE LEU GLN GLN THR LEU SEQRES 8 A 543 GLU ASP LEU ASP ASN GLN LEU ARG LYS LEU ASN SER ARG SEQRES 9 A 543 LEU PHE VAL VAL ARG GLY LYS PRO ALA GLU VAL PHE PRO SEQRES 10 A 543 ARG ILE PHE LYS SER TRP ARG VAL GLU MET LEU THR PHE SEQRES 11 A 543 GLU THR ASP ILE GLU PRO TYR SER VAL THR ARG ASP ALA SEQRES 12 A 543 ALA VAL GLN LYS LEU ALA LYS ALA GLU GLY VAL ARG VAL SEQRES 13 A 543 GLU THR HIS CYS SER HIS THR ILE TYR ASN PRO GLU LEU SEQRES 14 A 543 VAL ILE ALA LYS ASN LEU GLY LYS ALA PRO ILE THR TYR SEQRES 15 A 543 GLN LYS PHE LEU GLY ILE VAL GLU GLN LEU LYS VAL PRO SEQRES 16 A 543 LYS VAL LEU GLY VAL PRO GLU LYS LEU LYS ASN MET PRO SEQRES 17 A 543 THR PRO PRO LYS ASP GLU VAL GLU GLN LYS ASP SER ALA SEQRES 18 A 543 ALA TYR ASP CYS PRO THR MET LYS GLN LEU VAL LYS ARG SEQRES 19 A 543 PRO GLU GLU LEU GLY PRO ASN LYS PHE PRO GLY GLY GLU SEQRES 20 A 543 THR GLU ALA LEU ARG ARG MET GLU GLU SER LEU LYS ASP SEQRES 21 A 543 GLU ILE TRP VAL ALA ARG PHE GLU LYS PRO ASN THR ALA SEQRES 22 A 543 PRO ASN SER LEU GLU PRO SER THR THR VAL LEU SER PRO SEQRES 23 A 543 TYR LEU LYS PHE GLY CYS LEU SER ALA ARG LEU PHE ASN SEQRES 24 A 543 GLN LYS LEU LYS GLU ILE ILE LYS ARG GLN PRO LYS HIS SEQRES 25 A 543 SER GLN PRO PRO VAL SER LEU ILE GLY GLN LEU MET TRP SEQRES 26 A 543 ARG GLU PHE TYR TYR THR VAL ALA ALA ALA GLU PRO ASN SEQRES 27 A 543 PHE ASP ARG MET LEU GLY ASN VAL TYR CYS MET GLN ILE SEQRES 28 A 543 PRO TRP GLN GLU HIS PRO ASP HIS LEU GLU ALA TRP THR SEQRES 29 A 543 HIS GLY ARG THR GLY TYR PRO PHE ILE ASP ALA ILE MET SEQRES 30 A 543 ARG GLN LEU ARG GLN GLU GLY TRP ILE HIS HIS LEU ALA SEQRES 31 A 543 ARG HIS ALA VAL ALA CYS PHE LEU THR ARG GLY ASP LEU SEQRES 32 A 543 TRP ILE SER TRP GLU GLU GLY GLN ARG VAL PHE GLU GLN SEQRES 33 A 543 LEU LEU LEU ASP GLN ASP TRP ALA LEU ASN ALA GLY ASN SEQRES 34 A 543 TRP MET TRP LEU SER ALA SER ALA PHE PHE HIS GLN TYR SEQRES 35 A 543 PHE ARG VAL TYR SER PRO VAL ALA PHE GLY LYS LYS THR SEQRES 36 A 543 ASP PRO GLN GLY HIS TYR ILE ARG LYS TYR VAL PRO GLU SEQRES 37 A 543 LEU SER LYS TYR PRO ALA GLY CYS ILE TYR GLU PRO TRP SEQRES 38 A 543 LYS ALA SER LEU VAL ASP GLN ARG ALA TYR GLY CYS VAL SEQRES 39 A 543 LEU GLY THR ASP TYR PRO HIS ARG ILE VAL LYS HIS GLU SEQRES 40 A 543 VAL VAL HIS LYS GLU ASN ILE LYS ARG MET GLY ALA ALA SEQRES 41 A 543 TYR LYS VAL ASN ARG GLU VAL ARG THR GLY LYS GLU GLU SEQRES 42 A 543 GLU SER SER PHE GLU GLU LYS SER GLU THR SEQRES 1 C 15 DA DC DA DG DC DG DG DT DT DG DC DA DG SEQRES 2 C 15 DG DT SEQRES 1 D 15 DT DA DC DC DT DG DC DA DA DC DC DG DC SEQRES 2 D 15 DT DG

HET FAD A 521 53

HETNAM FAD FLAVIN-ADENINE DINUCLEOTIDE

FORMUL 4 FAD C27 H33 N9 O15 P2 FORMUL 5 HOH *9(H2 O)

HELIX 1 1 ASN A 21 ALA A 34 1 14 HELIX 2 2 GLY A 57 LEU A 78 1 22 HELIX 3 3 LYS A 88 ARG A 101 1 14 HELIX 4 4 GLU A 112 GLU A 129 1 18 HELIX 5 5 ASN A 143 ASN A 151 1 9 HELIX 6 6 THR A 158 GLU A 167 1 10 HELIX 7 7 ASP A 190 ASP A 196 1 7 HELIX 8 8 THR A 204 VAL A 209 1 6 HELIX 9 9 ARG A 211 LEU A 215 5 5 HELIX 10 10 GLY A 223 LEU A 235 1 13 HELIX 11 11 ASP A 237 PHE A 244 1 8 HELIX 12 12 GLU A 245 THR A 249 5 5 HELIX 13 13 LEU A 261 PHE A 267 1 7 HELIX 14 14 SER A 271 GLN A 286 1 16 HELIX 15 15 SER A 295 ALA A 312 1 18 HELIX 16 16 HIS A 333 HIS A 342 1 10 HELIX 17 17 TYR A 347 GLY A 361 1 15 HELIX 18 18 HIS A 364 THR A 376 1 13 HELIX 19 19 SER A 383 LEU A 395 1 13 HELIX 20 20 ASP A 399 SER A 411 1 13 HELIX 21 21 ALA A 427 THR A 432 5 6 HELIX 22 22 GLY A 436 VAL A 443 1 8 HELIX 23 23 PRO A 444 SER A 447 5 4 HELIX 24 24 PRO A 450 TYR A 455 1 6 HELIX 25 25 GLU A 456 ALA A 460 5 5 HELIX 26 26 SER A 461 TYR A 468 1 8 HELIX 27 27 LYS A 482 GLU A 503 1 22

SHEET 1 A 5 PHE A 83 ARG A 86 0 SHEET 2 A 5 TYR A 38 LEU A 46 1 N LEU A 46 O VAL A 85 SHEET 3 A 5 SER A 6 PHE A 12 1 N PHE A 12 O ILE A 43 SHEET 4 A 5 VAL A 102 GLU A 108 1 O MET A 104 N VAL A 9 SHEET 5 A 5 ARG A 132 HIS A 136 1 O ARG A 132 N LEU A 105

CISPEP 1 PRO A 292 PRO A 293 0 3.81

SITE 1 AC1 25 PHE A 244 LYS A 246 THR A 258 THR A 259 SITE 2 AC1 25 LEU A 261 SER A 262 LEU A 265 GLN A 299 SITE 3 AC1 25 LEU A 300 ARG A 303 TYR A 306 TRP A 362 SITE 4 AC1 25 HIS A 365 ARG A 368 PHE A 391 LEU A 395 SITE 5 AC1 25 ASP A 397 GLN A 398 ASP A 399 LEU A 402 SITE 6 AC1 25 ASN A 403 ASN A 406 TRP A 407 LEU A 410 SITE 7 AC1 25 DT C 8

CRYST1 83.360 88.840 86.590 90.00 90.00 90.00 P 21 21 21 4

ORIGX1 1.000000 0.000000 0.000000 0.00000

ORIGX2 0.000000 1.000000 0.000000 0.00000

ORIGX3 0.000000 0.000000 1.000000 0.00000

SCALE1 0.011996 0.000000 0.000000 0.00000

SCALE2 0.000000 0.011256 0.000000 0.00000

SCALE3 0.000000 0.000000 0.011549 0.00000