10 20 30 40 50 60 70 80 3CIW - Header ----|----|----|----|----|----|----|----|----|----|----|----|----|----|----|----| Asymmetric UnitHEADER ADOMET BINDING PROTEIN 12-MAR-08 3CIW
TITLE X-RAY STRUCTURE OF THE [FEFE]-HYDROGENASE MATURASE HYDE TITLE 2 FROM THERMOTOGA MARITIMA
COMPND MOL_ID: 1; COMPND 2 MOLECULE: FEFE-HYDROGENASE MATURASE; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES
SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: THERMOTOGA MARITIMA; SOURCE 3 GENE: HYDE; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_STRAIN: BL21 DE3; SOURCE 6 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 7 EXPRESSION_SYSTEM_PLASMID: PT7-7
KEYWDS RADICAL ADOMET PROTEIN, FEFE-HYDROGENASE MATURATION, BETA KEYWDS 2 BARREL, FE4S4 CLUSTER, ADOMET BINDING PROTEIN
EXPDTA X-RAY DIFFRACTION
AUTHOR Y.NICOLET,J.K.RUBACK,M.C.POSEWITZ,P.AMARA,C.MATHEVON,M.ATTA, AUTHOR 2 M.FONTECAVE,J.C.FONTECILLA-CAMPS
REVDAT 4 24-FEB-09 3CIW 1 VERSN REVDAT 3 15-JUL-08 3CIW 1 JRNL REVDAT 2 15-APR-08 3CIW 1 TITLE REVDAT 1 08-APR-08 3CIW 0
JRNL AUTH Y.NICOLET,J.K.RUBACH,M.C.POSEWITZ,P.AMARA, JRNL AUTH 2 C.MATHEVON,M.ATTA,M.FONTECAVE,J.C.FONTECILLA-CAMPS JRNL TITL X-RAY STRUCTURE OF THE [FEFE]-HYDROGENASE MATURASE JRNL TITL 2 HYDE FROM THERMOTOGA MARITIMA JRNL REF J.BIOL.CHEM. V. 283 18861 2008 JRNL REFN ISSN 0021-9258 JRNL PMID 18400755 JRNL DOI 10.1074/JBC.M801161200
REMARK 1
REMARK 2 REMARK 2 RESOLUTION. 1.35 ANGSTROMS.
REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.35 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 38.36 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 98.8 REMARK 3 NUMBER OF REFLECTIONS : 72284 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.145 REMARK 3 R VALUE (WORKING SET) : 0.143 REMARK 3 FREE R VALUE : 0.177 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 3837 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.35 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.39 REMARK 3 REFLECTION IN BIN (WORKING SET) : 4906 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 91.97 REMARK 3 BIN R VALUE (WORKING SET) : 0.2000 REMARK 3 BIN FREE R VALUE SET COUNT : 268 REMARK 3 BIN FREE R VALUE : 0.2350 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2831 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 192 REMARK 3 SOLVENT ATOMS : 426 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 12.00 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 12.92 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.75000 REMARK 3 B22 (A**2) : -0.17000 REMARK 3 B33 (A**2) : -0.58000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.057 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.053 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.031 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 1.680 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.972 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.961 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3113 ; 0.011 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 2209 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4288 ; 1.622 ; 2.070 REMARK 3 BOND ANGLES OTHERS (DEGREES): 5424 ; 1.205 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 384 ;16.910 ; 5.130 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 127 ;35.266 ;23.386 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 530 ;11.865 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 26 ;14.616 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 509 ; 0.109 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3253 ; 0.006 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 587 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 645 ; 0.232 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 2612 ; 0.206 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1567 ; 0.180 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): 1598 ; 0.084 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 289 ; 0.198 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 18 ; 0.206 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 75 ; 0.262 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 34 ; 0.160 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1840 ; 1.846 ; 2.000 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 718 ; 1.010 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2926 ; 2.436 ; 3.000 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1416 ; 2.025 ; 2.000 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1335 ; 2.709 ; 3.000 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): 5815 ; 1.569 ; 3.000 REMARK 3 SPHERICITY; FREE ATOMS (A**2): 430 ; 6.599 ; 3.000 REMARK 3 SPHERICITY; BONDED ATOMS (A**2): 5228 ; 3.587 ; 3.000 REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE REMARK 3 RIDING POSITIONS
REMARK 4 REMARK 4 3CIW COMPLIES WITH FORMAT V. 3.15, 01-DEC-08
REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 17-MAR-08. REMARK 100 THE RCSB ID CODE IS RCSB046829.
REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 17-SEP-06 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID14-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.933 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 4 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 77755 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.350 REMARK 200 RESOLUTION RANGE LOW (A) : 43.850 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.5 REMARK 200 DATA REDUNDANCY : 3.600 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.04500 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 16.2100 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.35 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.45 REMARK 200 COMPLETENESS FOR SHELL (%) : 95.8 REMARK 200 DATA REDUNDANCY IN SHELL : 3.10 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.39600 REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.950 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: SHARP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL
REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 43.43 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.17 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG4000 35%, 100MM TRISHCL, PH8.5, REMARK 280 100MM LISO4, 3MM CHAPS, 20MG/ML PROTEIN, VAPOR DIFFUSION, REMARK 280 HANGING DROP, TEMPERATURE 293K
REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 25.48700 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 42.97050 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 39.61400 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 42.97050 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 25.48700 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 39.61400 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL
REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA.
REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000
REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 VAL A 348
REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS(M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 MET A 1 CG SD CE REMARK 470 ARG A 4 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 5 CD OE1 OE2 REMARK 470 GLU A 8 CD OE1 OE2 REMARK 470 LYS A 9 CE NZ REMARK 470 ARG A 12 NE CZ NH1 NH2 REMARK 470 GLU A 14 CG CD OE1 OE2 REMARK 470 ARG A 29 CZ NH1 NH2 REMARK 470 LYS A 37 CE NZ REMARK 470 LYS A 80 CD CE NZ REMARK 470 GLU A 143 CD OE1 OE2 REMARK 470 LYS A 188 CD CE NZ REMARK 470 LYS A 242 CE NZ REMARK 470 LYS A 309 CD CE NZ REMARK 470 LYS A 315 CG CD CE NZ REMARK 470 LYS A 333 CD CE NZ REMARK 470 ARG A 336 CD NE CZ NH1 NH2
REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 2725 O HOH A 2812 1.81 REMARK 500 O HOH A 2598 O HOH A 2869 1.87 REMARK 500 O HOH A 2589 O HOH A 2833 1.97 REMARK 500 O HOH A 2883 O HOH A 2884 2.01 REMARK 500 O HOH A 2544 O HOH A 2726 2.11 REMARK 500 O HOH A 2814 O HOH A 2848 2.11 REMARK 500 O HOH A 2582 O HOH A 2793 2.19 REMARK 500 OE1 GLU A 150 O HOH A 2857 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 78 44.52 -91.54 REMARK 500 GLU A 161 -59.38 78.29 REMARK 500 THR A 175 -154.59 -153.71 REMARK 500 ALA A 196 -152.15 -120.04 REMARK 500 ASN A 288 10.35 -141.78 REMARK 500 GLN A 304 69.51 -111.90 REMARK 500 ASP A 337 -159.53 -132.76 REMARK 500 GLU A 346 -153.59 -138.72 REMARK 500 REMARK 500 REMARK: NULL
REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A2732 DISTANCE = 5.55 ANGSTROMS REMARK 525 HOH A2766 DISTANCE = 7.42 ANGSTROMS REMARK 525 HOH A2775 DISTANCE = 5.51 ANGSTROMS REMARK 525 HOH A2863 DISTANCE = 5.47 ANGSTROMS REMARK 525 HOH A2866 DISTANCE = 5.19 ANGSTROMS
REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 SAT A 1706 REMARK 610 CPS A 1702 REMARK 610 CPS A 1703 REMARK 610 CPS A 1704 REMARK 610 CPS A 1705
REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 349 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 350 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 351 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SF4 A 2460 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SAH A 1501 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CPS A 1701 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SAT A 1706 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CPS A 1702 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CPS A 1703 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CPS A 1704 REMARK 800 SITE_IDENTIFIER: BC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CPS A 1705
REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3CIX RELATED DB: PDB
DBREF 3CIW A 1 348 UNP Q9X0Z6 Q9X0Z6_THEMA 1 348
SEQRES 1 A 348 MET THR GLY ARG GLU ILE LEU GLU LYS LEU GLU ARG ARG SEQRES 2 A 348 GLU PHE THR ARG GLU VAL LEU LYS GLU ALA LEU SER ILE SEQRES 3 A 348 ASN ASP ARG GLY PHE ASN GLU ALA LEU PHE LYS LEU ALA SEQRES 4 A 348 ASP GLU ILE ARG ARG LYS TYR VAL GLY ASP GLU VAL HIS SEQRES 5 A 348 ILE ARG ALA ILE ILE GLU PHE SER ASN VAL CYS ARG LYS SEQRES 6 A 348 ASN CYS LEU TYR CYS GLY LEU ARG ARG ASP ASN LYS ASN SEQRES 7 A 348 LEU LYS ARG TYR ARG MET THR PRO GLU GLU ILE VAL GLU SEQRES 8 A 348 ARG ALA ARG LEU ALA VAL GLN PHE GLY ALA LYS THR ILE SEQRES 9 A 348 VAL LEU GLN SER GLY GLU ASP PRO TYR OTY MET PRO ASP SEQRES 10 A 348 VAL ILE SER ASP ILE VAL LYS GLU ILE LYS LYS MET GLY SEQRES 11 A 348 VAL ALA VAL THR LEU SER LEU GLY GLU TRP PRO ARG GLU SEQRES 12 A 348 TYR TYR GLU LYS TRP LYS GLU ALA GLY ALA ASP ARG TYR SEQRES 13 A 348 LEU LEU ARG HIS GLU THR ALA ASN PRO VAL LEU HIS ARG SEQRES 14 A 348 LYS LEU ARG PRO ASP THR SER PHE GLU ASN ARG LEU ASN SEQRES 15 A 348 CSO LEU LEU THR LEU LYS GLU LEU GLY TYR GLU THR GLY SEQRES 16 A 348 ALA GLY SER MET VAL GLY LEU PRO GLY GLN THR ILE ASP SEQRES 17 A 348 ASP LEU VAL ASP ASP LEU LEU PHE LEU LYS GLU HIS ASP SEQRES 18 A 348 PHE ASP MET VAL GLY ILE GLY PRO PHE ILE PRO HIS PRO SEQRES 19 A 348 ASP THR PRO LEU ALA ASN GLU LYS LYS GLY ASP PHE THR SEQRES 20 A 348 LEU THR LEU LYS MET VAL ALA LEU THR ARG ILE LEU LEU SEQRES 21 A 348 PRO ASP SER ASN ILE PRO ALA THR THR ALA MET GLY THR SEQRES 22 A 348 ILE VAL PRO GLY GLY ARG GLU ILE THR LEU ARG CYS GLY SEQRES 23 A 348 ALA ASN VAL ILE MET PRO ASN TRP THR PRO SER PRO TYR SEQRES 24 A 348 ARG GLN LEU TYR GLN LEU TYR PRO GLY LYS ILE CYS VAL SEQRES 25 A 348 PHE GLU LYS ASP THR ALA CYS ILE PRO CSO VAL MET LYS SEQRES 26 A 348 MET ILE GLU LEU LEU GLY ARG LYS PRO GLY ARG ASP TRP SEQRES 27 A 348 GLY GLY ARG LYS ARG VAL PHE GLU THR VAL
MODRES 3CIW OTY A 114 TYR MODRES 3CIW CSO A 183 CYS S-HYDROXYCYSTEINE MODRES 3CIW CSO A 322 CYS S-HYDROXYCYSTEINE
HET OTY A 114 13 HET CSO A 183 7 HET CSO A 322 10 HET CL A 349 2 HET CL A 350 1 HET CL A 351 1 HET SF4 A2460 8 HET SAH A1501 26 HET CPS A1701 42 HET SAT A1706 7 HET CPS A1702 29 HET CPS A1703 29 HET CPS A1704 25 HET CPS A1705 22
HETNAM OTY 2-AMINO-3-(4-HYDROXY-6-OXOCYCLOHEXA-1,4-DIENYL) HETNAM 2 OTY PROPANOIC ACID HETNAM CSO S-HYDROXYCYSTEINE HETNAM CL CHLORIDE ION HETNAM SF4 IRON/SULFUR CLUSTER HETNAM SAH S-ADENOSYL-L-HOMOCYSTEINE HETNAM CPS 3-[(3-CHOLAMIDOPROPYL)DIMETHYLAMMONIO]-1- HETNAM 2 CPS PROPANESULFONATE HETNAM SAT SULFOACETIC ACID
HETSYN CPS CHAPS
FORMUL 1 OTY C9 H11 N O4 FORMUL 1 CSO 2(C3 H7 N O3 S) FORMUL 2 CL 3(CL 1-) FORMUL 5 SF4 FE4 S4 FORMUL 6 SAH C14 H20 N6 O5 S FORMUL 7 CPS 5(C32 H58 N2 O7 S) FORMUL 8 SAT C2 H4 O5 S FORMUL 13 HOH *424(H2 O)
HELIX 1 1 THR A 2 ARG A 12 1 11 HELIX 2 2 THR A 16 ILE A 26 1 11 HELIX 3 3 ASP A 28 GLY A 48 1 21 HELIX 4 4 THR A 85 PHE A 99 1 15 HELIX 5 5 ASP A 111 MET A 115 5 5 HELIX 6 6 PRO A 116 LYS A 128 1 13 HELIX 7 7 PRO A 141 ALA A 151 1 11 HELIX 8 8 ASN A 164 ARG A 172 1 9 HELIX 9 9 SER A 176 LEU A 190 1 15 HELIX 10 10 THR A 206 ASP A 221 1 16 HELIX 11 11 ASP A 245 LEU A 260 1 16 HELIX 12 12 THR A 268 VAL A 275 1 8 HELIX 13 13 GLY A 277 ARG A 284 1 8 HELIX 14 14 TYR A 299 TYR A 303 5 5 HELIX 15 15 ALA A 318 LEU A 330 1 13
SHEET 1 A 7 MET A 224 VAL A 225 0 SHEET 2 A 7 GLU A 193 ALA A 196 1 N ALA A 196 O MET A 224 SHEET 3 A 7 ARG A 155 LEU A 157 1 N TYR A 156 O GLY A 195 SHEET 4 A 7 ALA A 132 SER A 136 1 N LEU A 135 O LEU A 157 SHEET 5 A 7 THR A 103 SER A 108 1 N ILE A 104 O THR A 134 SHEET 6 A 7 GLU A 50 SER A 60 1 N ALA A 55 O VAL A 105 SHEET 7 A 7 VAL A 289 ILE A 290 1 O ILE A 290 N HIS A 52 SHEET 1 B 7 MET A 224 VAL A 225 0 SHEET 2 B 7 GLU A 193 ALA A 196 1 N ALA A 196 O MET A 224 SHEET 3 B 7 ARG A 155 LEU A 157 1 N TYR A 156 O GLY A 195 SHEET 4 B 7 ALA A 132 SER A 136 1 N LEU A 135 O LEU A 157 SHEET 5 B 7 THR A 103 SER A 108 1 N ILE A 104 O THR A 134 SHEET 6 B 7 GLU A 50 SER A 60 1 N ALA A 55 O VAL A 105 SHEET 7 B 7 LYS A 333 PRO A 334 1 O LYS A 333 N VAL A 51 SHEET 1 C 2 MET A 199 VAL A 200 0 SHEET 2 C 2 GLY A 228 PRO A 229 1 O GLY A 228 N VAL A 200
LINK C TYR A 113 N OTY A 114 1555 1555 1.33 LINK C OTY A 114 N MET A 115 1555 1555 1.33 LINK C ASN A 182 N CSO A 183 1555 1555 1.33 LINK C CSO A 183 N LEU A 184 1555 1555 1.33 LINK C PRO A 321 N CSO A 322 1555 1555 1.33 LINK C CSO A 322 N VAL A 323 1555 1555 1.34 LINK SG CYS A 63 FE3 SF4 A2460 1555 1555 2.29 LINK SG CYS A 67 FE1 SF4 A2460 1555 1555 2.37 LINK SG CYS A 70 FE4 SF4 A2460 1555 1555 2.27 LINK FE2 SF4 A2460 N SAH A1501 1555 1555 2.28 LINK FE2 SF4 A2460 O SAH A1501 1555 1555 2.23
CISPEP 1 MET A 115 PRO A 116 0 -7.51 CISPEP 2 SER A 297 PRO A 298 0 6.45
SITE 1 AC1 7 ARG A 159 THR A 268 THR A 269 ALA A 270 SITE 2 AC1 7 TYR A 306 HOH A2811 HOH A2812 SITE 1 AC2 3 ARG A 54 THR A 134 ARG A 155 SITE 1 AC3 4 ARG A 159 PRO A 266 MET A 291 HOH A2603 SITE 1 AC4 4 CYS A 63 CYS A 67 CYS A 70 GLY A 109 SITE 1 AC5 17 TYR A 69 SER A 108 SER A 136 ARG A 159 SITE 2 AC5 17 GLU A 161 ARG A 180 MET A 199 PRO A 229 SITE 3 AC5 17 ILE A 231 TYR A 303 LEU A 305 HOH A2471 SITE 4 AC5 17 HOH A2477 HOH A2479 HOH A2488 HOH A2527 SITE 5 AC5 17 HOH A2794 SITE 1 AC6 17 GLN A 98 PHE A 99 GLY A 100 PRO A 276 SITE 2 AC6 17 GLY A 277 GLU A 280 ARG A 284 MET A 324 SITE 3 AC6 17 LEU A 330 HOH A2468 HOH A2504 HOH A2554 SITE 4 AC6 17 HOH A2565 HOH A2685 HOH A2753 HOH A2773 SITE 5 AC6 17 HOH A2820 SITE 1 AC7 4 LYS A 170 SER A 297 ASP A 316 HOH A2781 SITE 1 AC8 10 LYS A 37 ASP A 40 ARG A 284 THR A 317 SITE 2 AC8 10 HOH A2558 HOH A2607 HOH A2634 HOH A2653 SITE 3 AC8 10 HOH A2659 HOH A2781 SITE 1 AC9 11 ARG A 29 GLU A 33 PHE A 246 THR A 247 SITE 2 AC9 11 LEU A 250 HOH A2553 HOH A2557 HOH A2563 SITE 3 AC9 11 HOH A2758 HOH A2775 HOH A2824 SITE 1 BC1 8 ARG A 29 THR A 317 ALA A 318 HOH A2563 SITE 2 BC1 8 HOH A2591 HOH A2688 HOH A2821 HOH A2835 SITE 1 BC2 9 LYS A 128 MET A 324 LYS A 325 GLU A 328 SITE 2 BC2 9 HOH A2667 HOH A2703 HOH A2741 HOH A2742 SITE 3 BC2 9 HOH A2773
CRYST1 50.974 79.228 85.941 90.00 90.00 90.00 P 21 21 21 4
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 0.019618 0.000000 0.000000 0.00000
SCALE2 0.000000 0.012622 0.000000 0.00000
SCALE3 0.000000 0.000000 0.011636 0.00000