10 20 30 40 50 60 70 80 3CAK - Header ----|----|----|----|----|----|----|----|----|----|----|----|----|----|----|----| Asymmetric UnitHEADER HYDROLASE 20-FEB-08 3CAK
TITLE X-RAY STRUCTURE OF WT PTE WITH ETHYL PHOSPHATE
COMPND MOL_ID: 1; COMPND 2 MOLECULE: PARATHION HYDROLASE; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: UNP RESIDUES 35-365; COMPND 5 SYNONYM: PHOSPHOTRIESTERASE, PTE; COMPND 6 EC: 3.1.8.1; COMPND 7 ENGINEERED: YES
SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BREVUNDIMONAS DIMINUTA; SOURCE 3 ORGANISM_TAXID: 293; SOURCE 4 GENE: OPD; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID
KEYWDS PROTEIN-PRODUCT COMPLEX, HYDROLASE, MEMBRANE, METAL-BINDING, KEYWDS 2 PLASMID
EXPDTA X-RAY DIFFRACTION
AUTHOR J.KIM,P.-C.TSAI,S.C.ALMO,F.M.RAUSHEL
REVDAT 3 07-JUL-09 3CAK 1 REVDAT 2 24-FEB-09 3CAK 1 VERSN REVDAT 1 21-OCT-08 3CAK 0
JRNL AUTH J.KIM,P.C.TSAI,S.L.CHEN,F.HIMO,S.C.ALMO,F.M.RAUSHEL JRNL TITL STRUCTURE OF DIETHYL PHOSPHATE BOUND TO THE JRNL TITL 2 BINUCLEAR METAL CENTER OF PHOSPHOTRIESTERASE. JRNL REF BIOCHEMISTRY V. 47 9497 2008 JRNL REFN ISSN 0006-2960 JRNL PMID 18702530 JRNL DOI 10.1021/BI800971V
REMARK 1
REMARK 2 REMARK 2 RESOLUTION. 1.83 ANGSTROMS.
REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.4.0069 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.83 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.49 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 93.6 REMARK 3 NUMBER OF REFLECTIONS : 44744 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.143 REMARK 3 R VALUE (WORKING SET) : 0.140 REMARK 3 FREE R VALUE : 0.196 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 2413 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.83 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.88 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2967 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 83.31 REMARK 3 BIN R VALUE (WORKING SET) : 0.2060 REMARK 3 BIN FREE R VALUE SET COUNT : 142 REMARK 3 BIN FREE R VALUE : 0.2950 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5116 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 48 REMARK 3 SOLVENT ATOMS : 843 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 15.99 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.56000 REMARK 3 B22 (A**2) : -0.41000 REMARK 3 B33 (A**2) : -0.31000 REMARK 3 B12 (A**2) : 0.04000 REMARK 3 B13 (A**2) : -0.31000 REMARK 3 B23 (A**2) : -0.27000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.144 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.136 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.084 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.692 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.968 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.940 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 5264 ; 0.014 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 7149 ; 1.419 ; 1.968 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 674 ; 5.953 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 220 ;32.027 ;22.273 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 851 ;13.045 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 54 ;18.263 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 829 ; 0.110 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3958 ; 0.007 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 2958 ; 0.198 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 3712 ; 0.302 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 757 ; 0.138 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): 6 ; 0.077 ; 0.200 REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 74 ; 0.149 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 60 ; 0.157 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 3326 ; 1.006 ; 2.000 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 5363 ; 1.558 ; 3.000 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1934 ; 1.395 ; 2.000 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1786 ; 2.175 ; 3.000 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE REMARK 3 RIDING POSITIONS
REMARK 4 REMARK 4 3CAK COMPLIES WITH FORMAT V. 3.15, 01-DEC-08
REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 17-MAR-08. REMARK 100 THE RCSB ID CODE IS RCSB046545.
REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 24-OCT-07 REMARK 200 TEMPERATURE (KELVIN) : 180 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU RU300 REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU RAXIS IV REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 47158 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.830 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 2.900 REMARK 200 R MERGE (I) : 0.08000 REMARK 200 R SYM (I) : 0.06100 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 13.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.83 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.90 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 2.90 REMARK 200 R MERGE FOR SHELL (I) : 0.34400 REMARK 200 R SYM FOR SHELL (I) : 0.31900 REMARK 200 <I/SIGMA(I)> FOR SHELL : 3.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: PDB ENTRY 2OB3 REMARK 200 REMARK 200 REMARK: NULL
REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 40.15 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.06 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M BIS-TRIS, 20% POLYETHYLENE REMARK 280 GLYCOL MONOMETHYL ETHER 5000, PH 6.5, VAPOR DIFFUSION, SITTING REMARK 280 DROP, TEMPERATURE 293K
REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL
REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA.
REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3410 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 23060 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -92.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000
REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 365 REMARK 465 SER B 365
REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS(M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ALA A 364 O REMARK 470 ALA B 364 O
REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LEU A 249 CA - CB - CG ANGL. DEV. = -19.5 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 61 -140.92 -143.89 REMARK 500 TRP A 69 58.56 -144.39 REMARK 500 THR A 128 -167.03 -105.45 REMARK 500 TRP A 131 -150.42 -101.41 REMARK 500 GLU A 159 -133.94 51.29 REMARK 500 LEU A 262 37.62 -145.70 REMARK 500 TYR A 309 -150.61 -134.75 REMARK 500 VAL A 351 -58.27 -120.30 REMARK 500 SER B 61 -143.30 -142.88 REMARK 500 TRP B 69 59.88 -142.21 REMARK 500 ARG B 108 128.92 -39.42 REMARK 500 THR B 128 -164.82 -108.51 REMARK 500 TRP B 131 -155.70 -95.45 REMARK 500 GLU B 159 -135.12 51.91 REMARK 500 LEU B 262 38.93 -141.74 REMARK 500 TYR B 309 -153.74 -135.85 REMARK 500 VAL B 351 -58.43 -120.32 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CHIRAL CENTERS REMARK 500 REMARK 500 UNEXPECTED CONFIGURATION OF THE FOLLOWING CHIRAL REMARK 500 CENTER(S) USING IMPROPER CA--C--CB--N CHIRALITY REMARK 500 M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (11X,I3,1X,A3,1X,A1,I4,A1,6X,F5.1,6X,A1,10X,A1,3X,A16) REMARK 500 REMARK 500 M RES CSSEQI IMPROPER EXPECTED FOUND DETAILS REMARK 500 ARG A 139 24.3 L L OUTSIDE RANGE REMARK 500 REMARK 500 REMARK: NULL
REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CO A 5 CO REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 55 NE2 REMARK 620 2 HIS A 57 NE2 116.7 REMARK 620 3 ASP A 301 OD1 80.8 87.9 REMARK 620 4 DPF A 1 O2 119.6 119.6 81.3 REMARK 620 5 KCX A 169 OQ2 99.7 94.5 177.0 95.9 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CO A 4 CO REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 201 ND1 REMARK 620 2 HIS A 230 NE2 99.6 REMARK 620 3 DPF A 1 O4 101.9 124.8 REMARK 620 4 KCX A 169 OQ1 111.8 110.8 107.1 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CO B 1 CO REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 55 NE2 REMARK 620 2 HIS B 57 NE2 119.4 REMARK 620 3 ASP B 301 OD1 83.1 86.3 REMARK 620 4 EFS B 906 O4 117.3 120.9 85.0 REMARK 620 5 KCX B 169 OQ1 96.3 91.7 177.2 97.6 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CO B 2 CO REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 201 ND1 REMARK 620 2 HIS B 230 NE2 99.1 REMARK 620 3 EFS B 906 O1 99.4 127.2 REMARK 620 4 KCX B 169 OQ2 112.7 108.6 108.8 REMARK 620 N 1 2 3
REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CO B 1 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CO B 2 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CO A 4 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CO A 5 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE BTB A 906 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE DPF A 1 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE BTB B 905 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EFS B 906
DBREF 3CAK A 35 365 UNP P0A434 OPD_BREDI 35 365 DBREF 3CAK B 35 365 UNP P0A434 OPD_BREDI 35 365
SEQRES 1 A 331 ASP ARG ILE ASN THR VAL ARG GLY PRO ILE THR ILE SER SEQRES 2 A 331 GLU ALA GLY PHE THR LEU THR HIS GLU HIS ILE CYS GLY SEQRES 3 A 331 SER SER ALA GLY PHE LEU ARG ALA TRP PRO GLU PHE PHE SEQRES 4 A 331 GLY SER ARG LYS ALA LEU ALA GLU LYS ALA VAL ARG GLY SEQRES 5 A 331 LEU ARG ARG ALA ARG ALA ALA GLY VAL ARG THR ILE VAL SEQRES 6 A 331 ASP VAL SER THR PHE ASP ILE GLY ARG ASP VAL SER LEU SEQRES 7 A 331 LEU ALA GLU VAL SER ARG ALA ALA ASP VAL HIS ILE VAL SEQRES 8 A 331 ALA ALA THR GLY LEU TRP PHE ASP PRO PRO LEU SER MET SEQRES 9 A 331 ARG LEU ARG SER VAL GLU GLU LEU THR GLN PHE PHE LEU SEQRES 10 A 331 ARG GLU ILE GLN TYR GLY ILE GLU ASP THR GLY ILE ARG SEQRES 11 A 331 ALA GLY ILE ILE KCX VAL ALA THR THR GLY LYS ALA THR SEQRES 12 A 331 PRO PHE GLN GLU LEU VAL LEU LYS ALA ALA ALA ARG ALA SEQRES 13 A 331 SER LEU ALA THR GLY VAL PRO VAL THR THR HIS THR ALA SEQRES 14 A 331 ALA SER GLN ARG ASP GLY GLU GLN GLN ALA ALA ILE PHE SEQRES 15 A 331 GLU SER GLU GLY LEU SER PRO SER ARG VAL CYS ILE GLY SEQRES 16 A 331 HIS SER ASP ASP THR ASP ASP LEU SER TYR LEU THR ALA SEQRES 17 A 331 LEU ALA ALA ARG GLY TYR LEU ILE GLY LEU ASP HIS ILE SEQRES 18 A 331 PRO HIS SER ALA ILE GLY LEU GLU ASP ASN ALA SER ALA SEQRES 19 A 331 SER ALA LEU LEU GLY ILE ARG SER TRP GLN THR ARG ALA SEQRES 20 A 331 LEU LEU ILE LYS ALA LEU ILE ASP GLN GLY TYR MET LYS SEQRES 21 A 331 GLN ILE LEU VAL SER ASN ASP TRP LEU PHE GLY PHE SER SEQRES 22 A 331 SER TYR VAL THR ASN ILE MET ASP VAL MET ASP ARG VAL SEQRES 23 A 331 ASN PRO ASP GLY MET ALA PHE ILE PRO LEU ARG VAL ILE SEQRES 24 A 331 PRO PHE LEU ARG GLU LYS GLY VAL PRO GLN GLU THR LEU SEQRES 25 A 331 ALA GLY ILE THR VAL THR ASN PRO ALA ARG PHE LEU SER SEQRES 26 A 331 PRO THR LEU ARG ALA SER SEQRES 1 B 331 ASP ARG ILE ASN THR VAL ARG GLY PRO ILE THR ILE SER SEQRES 2 B 331 GLU ALA GLY PHE THR LEU THR HIS GLU HIS ILE CYS GLY SEQRES 3 B 331 SER SER ALA GLY PHE LEU ARG ALA TRP PRO GLU PHE PHE SEQRES 4 B 331 GLY SER ARG LYS ALA LEU ALA GLU LYS ALA VAL ARG GLY SEQRES 5 B 331 LEU ARG ARG ALA ARG ALA ALA GLY VAL ARG THR ILE VAL SEQRES 6 B 331 ASP VAL SER THR PHE ASP ILE GLY ARG ASP VAL SER LEU SEQRES 7 B 331 LEU ALA GLU VAL SER ARG ALA ALA ASP VAL HIS ILE VAL SEQRES 8 B 331 ALA ALA THR GLY LEU TRP PHE ASP PRO PRO LEU SER MET SEQRES 9 B 331 ARG LEU ARG SER VAL GLU GLU LEU THR GLN PHE PHE LEU SEQRES 10 B 331 ARG GLU ILE GLN TYR GLY ILE GLU ASP THR GLY ILE ARG SEQRES 11 B 331 ALA GLY ILE ILE KCX VAL ALA THR THR GLY LYS ALA THR SEQRES 12 B 331 PRO PHE GLN GLU LEU VAL LEU LYS ALA ALA ALA ARG ALA SEQRES 13 B 331 SER LEU ALA THR GLY VAL PRO VAL THR THR HIS THR ALA SEQRES 14 B 331 ALA SER GLN ARG ASP GLY GLU GLN GLN ALA ALA ILE PHE SEQRES 15 B 331 GLU SER GLU GLY LEU SER PRO SER ARG VAL CYS ILE GLY SEQRES 16 B 331 HIS SER ASP ASP THR ASP ASP LEU SER TYR LEU THR ALA SEQRES 17 B 331 LEU ALA ALA ARG GLY TYR LEU ILE GLY LEU ASP HIS ILE SEQRES 18 B 331 PRO HIS SER ALA ILE GLY LEU GLU ASP ASN ALA SER ALA SEQRES 19 B 331 SER ALA LEU LEU GLY ILE ARG SER TRP GLN THR ARG ALA SEQRES 20 B 331 LEU LEU ILE LYS ALA LEU ILE ASP GLN GLY TYR MET LYS SEQRES 21 B 331 GLN ILE LEU VAL SER ASN ASP TRP LEU PHE GLY PHE SER SEQRES 22 B 331 SER TYR VAL THR ASN ILE MET ASP VAL MET ASP ARG VAL SEQRES 23 B 331 ASN PRO ASP GLY MET ALA PHE ILE PRO LEU ARG VAL ILE SEQRES 24 B 331 PRO PHE LEU ARG GLU LYS GLY VAL PRO GLN GLU THR LEU SEQRES 25 B 331 ALA GLY ILE THR VAL THR ASN PRO ALA ARG PHE LEU SER SEQRES 26 B 331 PRO THR LEU ARG ALA SER
MODRES 3CAK KCX A 169 LYS LYSINE NZ-CARBOXYLIC ACID MODRES 3CAK KCX B 169 LYS LYSINE NZ-CARBOXYLIC ACID
HET KCX A 169 12 HET KCX B 169 12 HET CO B 1 1 HET CO B 2 1 HET CO A 4 1 HET CO A 5 1 HET BTB A 906 14 HET DPF A 1 9 HET BTB B 905 14 HET EFS B 906 7
HETNAM KCX LYSINE NZ-CARBOXYLIC ACID HETNAM CO COBALT (II) ION HETNAM BTB 2-[BIS-(2-HYDROXY-ETHYL)-AMINO]-2-HYDROXYMETHYL- HETNAM 2 BTB PROPANE-1,3-DIOL HETNAM DPF DIETHYL HYDROGEN PHOSPHATE HETNAM EFS ETHYL DIHYDROGEN PHOSPHATE
HETSYN BTB BIS-TRIS BUFFER
FORMUL 1 KCX 2(C7 H14 N2 O4) FORMUL 3 CO 4(CO 2+) FORMUL 7 BTB 2(C8 H19 N O5) FORMUL 8 DPF C4 H11 O4 P FORMUL 10 EFS C2 H7 O4 P FORMUL 11 HOH *843(H2 O)
HELIX 1 1 THR A 45 GLY A 50 1 6 HELIX 2 2 GLY A 64 TRP A 69 1 6 HELIX 3 3 PRO A 70 GLY A 74 5 5 HELIX 4 4 SER A 75 ALA A 93 1 19 HELIX 5 5 THR A 103 GLY A 107 5 5 HELIX 6 6 ASP A 109 ASP A 121 1 13 HELIX 7 7 PRO A 135 LEU A 140 1 6 HELIX 8 8 SER A 142 TYR A 156 1 15 HELIX 9 9 THR A 177 GLY A 195 1 19 HELIX 10 10 ALA A 203 GLN A 206 5 4 HELIX 11 11 ARG A 207 GLU A 219 1 13 HELIX 12 12 SER A 222 SER A 224 5 3 HELIX 13 13 HIS A 230 THR A 234 5 5 HELIX 14 14 ASP A 236 ARG A 246 1 11 HELIX 15 15 ASN A 265 GLY A 273 1 9 HELIX 16 16 SER A 276 GLN A 290 1 15 HELIX 17 17 TYR A 292 LYS A 294 5 3 HELIX 18 18 ASN A 312 ASN A 321 1 10 HELIX 19 19 ASP A 323 MET A 325 5 3 HELIX 20 20 ALA A 326 ARG A 331 1 6 HELIX 21 21 ARG A 331 LYS A 339 1 9 HELIX 22 22 PRO A 342 VAL A 351 1 10 HELIX 23 23 VAL A 351 SER A 359 1 9 HELIX 24 24 THR B 45 GLY B 50 1 6 HELIX 25 25 GLY B 64 TRP B 69 1 6 HELIX 26 26 PRO B 70 GLY B 74 5 5 HELIX 27 27 SER B 75 ALA B 93 1 19 HELIX 28 28 THR B 103 GLY B 107 5 5 HELIX 29 29 ASP B 109 ASP B 121 1 13 HELIX 30 30 PRO B 135 LEU B 140 1 6 HELIX 31 31 SER B 142 TYR B 156 1 15 HELIX 32 32 THR B 177 GLY B 195 1 19 HELIX 33 33 ALA B 203 GLN B 206 5 4 HELIX 34 34 ARG B 207 GLU B 219 1 13 HELIX 35 35 SER B 222 SER B 224 5 3 HELIX 36 36 HIS B 230 THR B 234 5 5 HELIX 37 37 ASP B 236 ARG B 246 1 11 HELIX 38 38 ASN B 265 GLY B 273 1 9 HELIX 39 39 SER B 276 GLY B 291 1 16 HELIX 40 40 TYR B 292 LYS B 294 5 3 HELIX 41 41 ASN B 312 ASN B 321 1 10 HELIX 42 42 ASP B 323 MET B 325 5 3 HELIX 43 43 ALA B 326 ARG B 331 1 6 HELIX 44 44 ARG B 331 LYS B 339 1 9 HELIX 45 45 PRO B 342 VAL B 351 1 10 HELIX 46 46 VAL B 351 SER B 359 1 9
SHEET 1 A 2 ILE A 37 THR A 39 0 SHEET 2 A 2 GLY A 42 ILE A 44 -1 O ILE A 44 N ILE A 37 SHEET 1 B 3 THR A 52 GLU A 56 0 SHEET 2 B 3 THR A 97 ASP A 100 1 O VAL A 99 N LEU A 53 SHEET 3 B 3 HIS A 123 VAL A 125 1 O HIS A 123 N ILE A 98 SHEET 1 C 2 CYS A 59 GLY A 60 0 SHEET 2 C 2 GLY A 305 PHE A 306 1 O GLY A 305 N GLY A 60 SHEET 1 D 6 ALA A 127 GLY A 129 0 SHEET 2 D 6 ILE A 167 ALA A 171 1 O KCX A 169 N THR A 128 SHEET 3 D 6 VAL A 198 HIS A 201 1 O THR A 199 N ILE A 168 SHEET 4 D 6 VAL A 226 ILE A 228 1 O CYS A 227 N VAL A 198 SHEET 5 D 6 LEU A 249 LEU A 252 1 O LEU A 249 N ILE A 228 SHEET 6 D 6 ILE A 296 VAL A 298 1 O LEU A 297 N ILE A 250 SHEET 1 E 2 ILE B 37 THR B 39 0 SHEET 2 E 2 GLY B 42 ILE B 44 -1 O ILE B 44 N ILE B 37 SHEET 1 F 3 THR B 52 GLU B 56 0 SHEET 2 F 3 THR B 97 ASP B 100 1 O VAL B 99 N LEU B 53 SHEET 3 F 3 HIS B 123 VAL B 125 1 O VAL B 125 N ASP B 100 SHEET 1 G 2 CYS B 59 GLY B 60 0 SHEET 2 G 2 GLY B 305 PHE B 306 1 O GLY B 305 N GLY B 60 SHEET 1 H 6 ALA B 127 LEU B 130 0 SHEET 2 H 6 ILE B 167 ALA B 171 1 O KCX B 169 N THR B 128 SHEET 3 H 6 VAL B 198 HIS B 201 1 O THR B 199 N ILE B 168 SHEET 4 H 6 VAL B 226 ILE B 228 1 O CYS B 227 N VAL B 198 SHEET 5 H 6 LEU B 249 LEU B 252 1 O LEU B 249 N ILE B 228 SHEET 6 H 6 ILE B 296 VAL B 298 1 O LEU B 297 N LEU B 252
LINK C ILE A 168 N KCX A 169 1555 1555 1.31 LINK C KCX A 169 N VAL A 170 1555 1555 1.31 LINK C ILE B 168 N KCX B 169 1555 1555 1.31 LINK C KCX B 169 N VAL B 170 1555 1555 1.30 LINK NE2 HIS A 55 CO CO A 5 1555 1555 2.10 LINK NE2 HIS A 57 CO CO A 5 1555 1555 2.05 LINK ND1 HIS A 201 CO CO A 4 1555 1555 2.19 LINK NE2 HIS A 230 CO CO A 4 1555 1555 2.10 LINK OD1 ASP A 301 CO CO A 5 1555 1555 2.45 LINK NE2 HIS B 55 CO CO B 1 1555 1555 2.08 LINK NE2 HIS B 57 CO CO B 1 1555 1555 2.09 LINK ND1 HIS B 201 CO CO B 2 1555 1555 2.07 LINK NE2 HIS B 230 CO CO B 2 1555 1555 2.12 LINK OD1 ASP B 301 CO CO B 1 1555 1555 2.51 LINK CO CO B 1 O4 EFS B 906 1555 1555 1.89 LINK CO CO B 2 O1 EFS B 906 1555 1555 1.99 LINK CO CO A 4 O4 DPF A 1 1555 1555 2.17 LINK CO CO A 5 O2 DPF A 1 1555 1555 1.98 LINK OQ1 KCX A 169 CO CO A 4 1555 1555 1.92 LINK OQ2 KCX A 169 CO CO A 5 1555 1555 2.13 LINK OQ1 KCX B 169 CO CO B 1 1555 1555 2.07 LINK OQ2 KCX B 169 CO CO B 2 1555 1555 1.94
SITE 1 AC1 5 HIS B 55 HIS B 57 KCX B 169 ASP B 301 SITE 2 AC1 5 EFS B 906 SITE 1 AC2 4 KCX B 169 HIS B 201 HIS B 230 EFS B 906 SITE 1 AC3 4 DPF A 1 KCX A 169 HIS A 201 HIS A 230 SITE 1 AC4 5 DPF A 1 HIS A 55 HIS A 57 KCX A 169 SITE 2 AC4 5 ASP A 301 SITE 1 AC5 10 PHE A 72 PHE A 73 THR A 311 ASP A 315 SITE 2 AC5 10 HOH A 918 HOH A 941 HOH A 995 HOH A1096 SITE 3 AC5 10 HOH A1097 HOH A1256 SITE 1 AC6 11 CO A 4 CO A 5 HIS A 55 HIS A 57 SITE 2 AC6 11 TRP A 131 KCX A 169 HIS A 201 HIS A 257 SITE 3 AC6 11 ASP A 301 HOH A1012 HOH A1127 SITE 1 AC7 11 PHE B 72 PHE B 73 GLY B 74 THR B 311 SITE 2 AC7 11 ASP B 315 HOH B1350 HOH B1362 HOH B1457 SITE 3 AC7 11 HOH B1492 HOH B1616 HOH B1634 SITE 1 AC8 11 CO B 1 CO B 2 HIS B 55 HIS B 57 SITE 2 AC8 11 TRP B 131 KCX B 169 HIS B 201 HIS B 230 SITE 3 AC8 11 ASP B 301 HOH B1506 HOH B1757
CRYST1 43.286 45.338 78.913 104.73 93.40 97.65 P 1 2
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 0.023102 0.003103 0.002276 0.00000
SCALE2 0.000000 0.022255 0.006116 0.00000
SCALE3 0.000000 0.000000 0.013165 0.00000