10 20 30 40 50 60 70 80 3C9T - Header ----|----|----|----|----|----|----|----|----|----|----|----|----|----|----|----| Asymmetric UnitHEADER TRANSFERASE 18-FEB-08 3C9T
TITLE AATHIL COMPLEXED WITH AMPPCP AND TMP
COMPND MOL_ID: 1; COMPND 2 MOLECULE: THIAMINE MONOPHOSPHATE KINASE; COMPND 3 CHAIN: A, B; COMPND 4 EC: 2.7.4.16; COMPND 5 ENGINEERED: YES
SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: AQUIFEX AEOLICUS; SOURCE 3 ORGANISM_TAXID: 63363; SOURCE 4 GENE: THIL; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: B*R2; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: XF1
KEYWDS BETA BARREL, ALPHA-BETA STRUCTURE, KINASE, TRANSFERASE
EXPDTA X-RAY DIFFRACTION
AUTHOR K.M.MCCULLOCH,C.KINSLAND,T.P.BEGLEY,S.E.EALICK
REVDAT 3 24-FEB-09 3C9T 1 VERSN REVDAT 2 25-MAR-08 3C9T 1 JRNL REVDAT 1 18-MAR-08 3C9T 0
JRNL AUTH K.M.MCCULLOCH,C.KINSLAND,T.P.BEGLEY,S.E.EALICK JRNL TITL STRUCTURAL STUDIES OF THIAMIN MONOPHOSPHATE KINASE JRNL TITL 2 IN COMPLEX WITH SUBSTRATES AND PRODUCTS. JRNL REF BIOCHEMISTRY V. 47 3810 2008 JRNL REFN ISSN 0006-2960 JRNL PMID 18311927 JRNL DOI 10.1021/BI800041H
REMARK 1
REMARK 2 REMARK 2 RESOLUTION. 2.60 ANGSTROMS.
REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.1 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES, PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 31.65 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 155106.703 REMARK 3 DATA CUTOFF LOW (ABS(F)) : 0.0000 REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 86.8 REMARK 3 NUMBER OF REFLECTIONS : 22109 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.213 REMARK 3 FREE R VALUE : 0.270 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.200 REMARK 3 FREE R VALUE TEST SET COUNT : 2260 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.006 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 6 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.60 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.76 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 76.50 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 2875 REMARK 3 BIN R VALUE (WORKING SET) : 0.3230 REMARK 3 BIN FREE R VALUE : 0.3940 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 10.10 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 323 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.022 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4881 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 116 REMARK 3 SOLVENT ATOMS : 14 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 56.10 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 19.32000 REMARK 3 B22 (A**2) : 1.91000 REMARK 3 B33 (A**2) : -21.23000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.007 REMARK 3 BOND ANGLES (DEGREES) : NULL REMARK 3 DIHEDRAL ANGLES (DEGREES) : NULL REMARK 3 IMPROPER ANGLES (DEGREES) : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : NULL REMARK 3 KSOL : NULL REMARK 3 BSOL : NULL REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL
REMARK 4 REMARK 4 3C9T COMPLIES WITH FORMAT V. 3.15, 01-DEC-08
REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 19-FEB-08. REMARK 100 THE RCSB ID CODE IS RCSB046521.
REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 10-MAR-06 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.4 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 24-ID-C REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97949 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 22109 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.600 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 90.0 REMARK 200 DATA REDUNDANCY : 3.200 REMARK 200 R MERGE (I) : 0.03800 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 18.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.60 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.69 REMARK 200 COMPLETENESS FOR SHELL (%) : 82.6 REMARK 200 DATA REDUNDANCY IN SHELL : 3.20 REMARK 200 R MERGE FOR SHELL (I) : 0.14300 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: N/A REMARK 200 SOFTWARE USED: CNS REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL
REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 52.65 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.60 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 6-11% ISOPROPANOL, 200 MM NACL, 4- REMARK 280 6% 2-METHYL-2,4-PENTANEDIOL, 10 MM CACL2, PH 7.4, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 295K
REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 30.37500 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 98.43000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 33.42150 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 98.43000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 30.37500 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 33.42150 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL
REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA.
REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 11160 ANGSTROM**2 REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000
REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -35 REMARK 465 GLY A -34 REMARK 465 SER A -33 REMARK 465 HIS A -32 REMARK 465 HIS A -31 REMARK 465 HIS A -30 REMARK 465 HIS A -29 REMARK 465 HIS A -28 REMARK 465 HIS A -27 REMARK 465 ASP A -26 REMARK 465 ILE A -25 REMARK 465 THR A -24 REMARK 465 SER A -23 REMARK 465 LEU A -22 REMARK 465 TYR A -21 REMARK 465 LYS A -20 REMARK 465 LYS A -19 REMARK 465 ALA A -18 REMARK 465 GLY A -17 REMARK 465 SER A -16 REMARK 465 ALA A -15 REMARK 465 ALA A -14 REMARK 465 ALA A -13 REMARK 465 VAL A -12 REMARK 465 LEU A -11 REMARK 465 GLU A -10 REMARK 465 GLU A -9 REMARK 465 ASN A -8 REMARK 465 LEU A -7 REMARK 465 TYR A -6 REMARK 465 PHE A -5 REMARK 465 GLN A -4 REMARK 465 GLY A -3 REMARK 465 SER A -2 REMARK 465 PHE A -1 REMARK 465 MET B -35 REMARK 465 GLY B -34 REMARK 465 SER B -33 REMARK 465 HIS B -32 REMARK 465 HIS B -31 REMARK 465 HIS B -30 REMARK 465 HIS B -29 REMARK 465 HIS B -28 REMARK 465 HIS B -27 REMARK 465 ASP B -26 REMARK 465 ILE B -25 REMARK 465 THR B -24 REMARK 465 SER B -23 REMARK 465 LEU B -22 REMARK 465 TYR B -21 REMARK 465 LYS B -20 REMARK 465 LYS B -19 REMARK 465 ALA B -18 REMARK 465 GLY B -17 REMARK 465 SER B -16 REMARK 465 ALA B -15 REMARK 465 ALA B -14 REMARK 465 ALA B -13 REMARK 465 VAL B -12 REMARK 465 LEU B -11 REMARK 465 GLU B -10 REMARK 465 GLU B -9 REMARK 465 ASN B -8 REMARK 465 LEU B -7 REMARK 465 TYR B -6 REMARK 465 PHE B -5 REMARK 465 GLN B -4 REMARK 465 GLY B -3
REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 27 -50.31 -3.10 REMARK 500 CYS A 34 77.92 61.98 REMARK 500 SER A 35 -72.66 73.71 REMARK 500 LYS A 80 -61.23 -129.05 REMARK 500 LYS A 112 51.45 75.79 REMARK 500 HIS A 268 163.76 176.80 REMARK 500 ASP A 278 56.91 -96.02 REMARK 500 GLU A 289 139.56 42.98 REMARK 500 PRO A 300 141.98 -36.80 REMARK 500 ILE B 24 118.46 176.34 REMARK 500 SER B 35 -23.93 66.22 REMARK 500 LYS B 80 -72.22 -125.06 REMARK 500 ASP B 149 150.88 -45.05 REMARK 500 ARG B 187 63.01 -117.57 REMARK 500 GLU B 232 46.34 -69.66 REMARK 500 LYS B 233 4.41 -158.28 REMARK 500 HIS B 268 164.42 179.38 REMARK 500 ASP B 278 25.48 -68.59 REMARK 500 LYS B 297 -90.25 -58.56 REMARK 500 VAL B 298 107.18 87.37 REMARK 500 GLU B 299 -76.84 -10.97 REMARK 500 TRP B 303 -76.22 -87.85 REMARK 500 LYS B 304 125.88 58.90 REMARK 500 REMARK 500 REMARK: NULL
REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 310 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 43 OD2 REMARK 620 2 ASP A 71 OD2 111.6 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 313 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 71 OD1 REMARK 620 2 ASP A 207 OD2 84.9 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 314 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASN A 119 OD1 REMARK 620 2 ASP B 43 OD1 94.5 REMARK 620 3 ACP A 307 O3G 106.0 86.7 REMARK 620 4 TPS B 308 O2 158.2 107.1 73.1 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 313 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 43 OD2 REMARK 620 2 ASP B 71 OD2 85.8 REMARK 620 3 ACP A 307 O3G 106.6 116.7 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 311 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASN B 119 ND2 REMARK 620 2 TPS A 308 O2 134.8 REMARK 620 3 ACP B 307 O1G 82.9 64.7 REMARK 620 N 1 2
REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 309 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 310 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG B 311 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 312 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 313 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 314 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG B 310 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG B 312 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG B 313 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG B 314 REMARK 800 SITE_IDENTIFIER: BC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACP B 307 REMARK 800 SITE_IDENTIFIER: BC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE TPS A 308 REMARK 800 SITE_IDENTIFIER: BC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACP A 307 REMARK 800 SITE_IDENTIFIER: BC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE TPS B 308
REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3C9R RELATED DB: PDB REMARK 900 RELATED ID: 3C9S RELATED DB: PDB REMARK 900 RELATED ID: 3C9U RELATED DB: PDB
DBREF 3C9T A 1 306 UNP O67883 O67883_AQUAE 1 306 DBREF 3C9T B 1 306 UNP O67883 O67883_AQUAE 1 306
SEQADV 3C9T MET A -35 UNP O67883 EXPRESSION TAG SEQADV 3C9T GLY A -34 UNP O67883 EXPRESSION TAG SEQADV 3C9T SER A -33 UNP O67883 EXPRESSION TAG SEQADV 3C9T HIS A -32 UNP O67883 EXPRESSION TAG SEQADV 3C9T HIS A -31 UNP O67883 EXPRESSION TAG SEQADV 3C9T HIS A -30 UNP O67883 EXPRESSION TAG SEQADV 3C9T HIS A -29 UNP O67883 EXPRESSION TAG SEQADV 3C9T HIS A -28 UNP O67883 EXPRESSION TAG SEQADV 3C9T HIS A -27 UNP O67883 EXPRESSION TAG SEQADV 3C9T ASP A -26 UNP O67883 EXPRESSION TAG SEQADV 3C9T ILE A -25 UNP O67883 EXPRESSION TAG SEQADV 3C9T THR A -24 UNP O67883 EXPRESSION TAG SEQADV 3C9T SER A -23 UNP O67883 EXPRESSION TAG SEQADV 3C9T LEU A -22 UNP O67883 EXPRESSION TAG SEQADV 3C9T TYR A -21 UNP O67883 EXPRESSION TAG SEQADV 3C9T LYS A -20 UNP O67883 EXPRESSION TAG SEQADV 3C9T LYS A -19 UNP O67883 EXPRESSION TAG SEQADV 3C9T ALA A -18 UNP O67883 EXPRESSION TAG SEQADV 3C9T GLY A -17 UNP O67883 EXPRESSION TAG SEQADV 3C9T SER A -16 UNP O67883 EXPRESSION TAG SEQADV 3C9T ALA A -15 UNP O67883 EXPRESSION TAG SEQADV 3C9T ALA A -14 UNP O67883 EXPRESSION TAG SEQADV 3C9T ALA A -13 UNP O67883 EXPRESSION TAG SEQADV 3C9T VAL A -12 UNP O67883 EXPRESSION TAG SEQADV 3C9T LEU A -11 UNP O67883 EXPRESSION TAG SEQADV 3C9T GLU A -10 UNP O67883 EXPRESSION TAG SEQADV 3C9T GLU A -9 UNP O67883 EXPRESSION TAG SEQADV 3C9T ASN A -8 UNP O67883 EXPRESSION TAG SEQADV 3C9T LEU A -7 UNP O67883 EXPRESSION TAG SEQADV 3C9T TYR A -6 UNP O67883 EXPRESSION TAG SEQADV 3C9T PHE A -5 UNP O67883 EXPRESSION TAG SEQADV 3C9T GLN A -4 UNP O67883 EXPRESSION TAG SEQADV 3C9T GLY A -3 UNP O67883 EXPRESSION TAG SEQADV 3C9T SER A -2 UNP O67883 EXPRESSION TAG SEQADV 3C9T PHE A -1 UNP O67883 EXPRESSION TAG SEQADV 3C9T THR A 0 UNP O67883 EXPRESSION TAG SEQADV 3C9T MET B -35 UNP O67883 EXPRESSION TAG SEQADV 3C9T GLY B -34 UNP O67883 EXPRESSION TAG SEQADV 3C9T SER B -33 UNP O67883 EXPRESSION TAG SEQADV 3C9T HIS B -32 UNP O67883 EXPRESSION TAG SEQADV 3C9T HIS B -31 UNP O67883 EXPRESSION TAG SEQADV 3C9T HIS B -30 UNP O67883 EXPRESSION TAG SEQADV 3C9T HIS B -29 UNP O67883 EXPRESSION TAG SEQADV 3C9T HIS B -28 UNP O67883 EXPRESSION TAG SEQADV 3C9T HIS B -27 UNP O67883 EXPRESSION TAG SEQADV 3C9T ASP B -26 UNP O67883 EXPRESSION TAG SEQADV 3C9T ILE B -25 UNP O67883 EXPRESSION TAG SEQADV 3C9T THR B -24 UNP O67883 EXPRESSION TAG SEQADV 3C9T SER B -23 UNP O67883 EXPRESSION TAG SEQADV 3C9T LEU B -22 UNP O67883 EXPRESSION TAG SEQADV 3C9T TYR B -21 UNP O67883 EXPRESSION TAG SEQADV 3C9T LYS B -20 UNP O67883 EXPRESSION TAG SEQADV 3C9T LYS B -19 UNP O67883 EXPRESSION TAG SEQADV 3C9T ALA B -18 UNP O67883 EXPRESSION TAG SEQADV 3C9T GLY B -17 UNP O67883 EXPRESSION TAG SEQADV 3C9T SER B -16 UNP O67883 EXPRESSION TAG SEQADV 3C9T ALA B -15 UNP O67883 EXPRESSION TAG SEQADV 3C9T ALA B -14 UNP O67883 EXPRESSION TAG SEQADV 3C9T ALA B -13 UNP O67883 EXPRESSION TAG SEQADV 3C9T VAL B -12 UNP O67883 EXPRESSION TAG SEQADV 3C9T LEU B -11 UNP O67883 EXPRESSION TAG SEQADV 3C9T GLU B -10 UNP O67883 EXPRESSION TAG SEQADV 3C9T GLU B -9 UNP O67883 EXPRESSION TAG SEQADV 3C9T ASN B -8 UNP O67883 EXPRESSION TAG SEQADV 3C9T LEU B -7 UNP O67883 EXPRESSION TAG SEQADV 3C9T TYR B -6 UNP O67883 EXPRESSION TAG SEQADV 3C9T PHE B -5 UNP O67883 EXPRESSION TAG SEQADV 3C9T GLN B -4 UNP O67883 EXPRESSION TAG SEQADV 3C9T GLY B -3 UNP O67883 EXPRESSION TAG SEQADV 3C9T SER B -2 UNP O67883 EXPRESSION TAG SEQADV 3C9T PHE B -1 UNP O67883 EXPRESSION TAG SEQADV 3C9T THR B 0 UNP O67883 EXPRESSION TAG
SEQRES 1 A 342 MET GLY SER HIS HIS HIS HIS HIS HIS ASP ILE THR SER SEQRES 2 A 342 LEU TYR LYS LYS ALA GLY SER ALA ALA ALA VAL LEU GLU SEQRES 3 A 342 GLU ASN LEU TYR PHE GLN GLY SER PHE THR MET ARG LEU SEQRES 4 A 342 LYS GLU LEU GLY GLU PHE GLY LEU ILE ASP LEU ILE LYS SEQRES 5 A 342 LYS THR LEU GLU SER LYS VAL ILE GLY ASP ASP THR ALA SEQRES 6 A 342 PRO VAL GLU TYR CYS SER LYS LYS LEU LEU LEU THR THR SEQRES 7 A 342 ASP VAL LEU ASN GLU GLY VAL HIS PHE LEU ARG SER TYR SEQRES 8 A 342 ILE PRO GLU ALA VAL GLY TRP LYS ALA ILE SER VAL ASN SEQRES 9 A 342 VAL SER ASP VAL ILE ALA ASN GLY GLY LEU PRO LYS TRP SEQRES 10 A 342 ALA LEU ILE SER LEU ASN LEU PRO GLU ASP LEU GLU VAL SEQRES 11 A 342 SER TYR VAL GLU ARG PHE TYR ILE GLY VAL LYS ARG ALA SEQRES 12 A 342 CYS GLU PHE TYR LYS CYS GLU VAL VAL GLY GLY ASN ILE SEQRES 13 A 342 SER LYS SER GLU LYS ILE GLY ILE SER VAL PHE LEU VAL SEQRES 14 A 342 GLY GLU THR GLU ARG PHE VAL GLY ARG ASP GLY ALA ARG SEQRES 15 A 342 LEU GLY ASP SER VAL PHE VAL SER GLY THR LEU GLY ASP SEQRES 16 A 342 SER ARG ALA GLY LEU GLU LEU LEU LEU MET GLU LYS GLU SEQRES 17 A 342 GLU TYR GLU PRO PHE GLU LEU ALA LEU ILE GLN ARG HIS SEQRES 18 A 342 LEU ARG PRO THR ALA ARG ILE ASP TYR VAL LYS HIS ILE SEQRES 19 A 342 GLN LYS TYR ALA ASN ALA SER MET ASP ILE SER ASP GLY SEQRES 20 A 342 LEU VAL ALA ASP ALA ASN HIS LEU ALA GLN ARG SER GLY SEQRES 21 A 342 VAL LYS ILE GLU ILE LEU SER GLU LYS LEU PRO LEU SER SEQRES 22 A 342 ASN GLU LEU LYS MET TYR CYS GLU LYS TYR GLY LYS ASN SEQRES 23 A 342 PRO ILE GLU TYR ALA LEU PHE GLY GLY GLU ASP TYR GLN SEQRES 24 A 342 LEU LEU PHE THR HIS PRO LYS GLU ARG TRP ASN PRO PHE SEQRES 25 A 342 LEU ASP MET THR GLU ILE GLY ARG VAL GLU GLU GLY GLU SEQRES 26 A 342 GLY VAL PHE VAL ASP GLY LYS LYS VAL GLU PRO LYS GLY SEQRES 27 A 342 TRP LYS HIS PHE SEQRES 1 B 342 MET GLY SER HIS HIS HIS HIS HIS HIS ASP ILE THR SER SEQRES 2 B 342 LEU TYR LYS LYS ALA GLY SER ALA ALA ALA VAL LEU GLU SEQRES 3 B 342 GLU ASN LEU TYR PHE GLN GLY SER PHE THR MET ARG LEU SEQRES 4 B 342 LYS GLU LEU GLY GLU PHE GLY LEU ILE ASP LEU ILE LYS SEQRES 5 B 342 LYS THR LEU GLU SER LYS VAL ILE GLY ASP ASP THR ALA SEQRES 6 B 342 PRO VAL GLU TYR CYS SER LYS LYS LEU LEU LEU THR THR SEQRES 7 B 342 ASP VAL LEU ASN GLU GLY VAL HIS PHE LEU ARG SER TYR SEQRES 8 B 342 ILE PRO GLU ALA VAL GLY TRP LYS ALA ILE SER VAL ASN SEQRES 9 B 342 VAL SER ASP VAL ILE ALA ASN GLY GLY LEU PRO LYS TRP SEQRES 10 B 342 ALA LEU ILE SER LEU ASN LEU PRO GLU ASP LEU GLU VAL SEQRES 11 B 342 SER TYR VAL GLU ARG PHE TYR ILE GLY VAL LYS ARG ALA SEQRES 12 B 342 CYS GLU PHE TYR LYS CYS GLU VAL VAL GLY GLY ASN ILE SEQRES 13 B 342 SER LYS SER GLU LYS ILE GLY ILE SER VAL PHE LEU VAL SEQRES 14 B 342 GLY GLU THR GLU ARG PHE VAL GLY ARG ASP GLY ALA ARG SEQRES 15 B 342 LEU GLY ASP SER VAL PHE VAL SER GLY THR LEU GLY ASP SEQRES 16 B 342 SER ARG ALA GLY LEU GLU LEU LEU LEU MET GLU LYS GLU SEQRES 17 B 342 GLU TYR GLU PRO PHE GLU LEU ALA LEU ILE GLN ARG HIS SEQRES 18 B 342 LEU ARG PRO THR ALA ARG ILE ASP TYR VAL LYS HIS ILE SEQRES 19 B 342 GLN LYS TYR ALA ASN ALA SER MET ASP ILE SER ASP GLY SEQRES 20 B 342 LEU VAL ALA ASP ALA ASN HIS LEU ALA GLN ARG SER GLY SEQRES 21 B 342 VAL LYS ILE GLU ILE LEU SER GLU LYS LEU PRO LEU SER SEQRES 22 B 342 ASN GLU LEU LYS MET TYR CYS GLU LYS TYR GLY LYS ASN SEQRES 23 B 342 PRO ILE GLU TYR ALA LEU PHE GLY GLY GLU ASP TYR GLN SEQRES 24 B 342 LEU LEU PHE THR HIS PRO LYS GLU ARG TRP ASN PRO PHE SEQRES 25 B 342 LEU ASP MET THR GLU ILE GLY ARG VAL GLU GLU GLY GLU SEQRES 26 B 342 GLY VAL PHE VAL ASP GLY LYS LYS VAL GLU PRO LYS GLY SEQRES 27 B 342 TRP LYS HIS PHE
HET MG A 309 1 HET MG A 310 1 HET MG A 312 1 HET MG A 313 1 HET MG A 314 1 HET MG B 311 1 HET MG B 310 1 HET MG B 312 1 HET MG B 313 1 HET MG B 314 1 HET TPS A 308 22 HET ACP A 307 31 HET ACP B 307 31 HET TPS B 308 22
HETNAM MG MAGNESIUM ION HETNAM TPS THIAMIN PHOSPHATE HETNAM ACP PHOSPHOMETHYLPHOSPHONIC ACID ADENYLATE ESTER
HETSYN ACP ADENOSINE-5'-[BETA, GAMMA-METHYLENE]TRIPHOSPHATE
FORMUL 3 MG 10(MG 2+) FORMUL 13 TPS 2(C12 H18 N4 O4 P S 1+) FORMUL 14 ACP 2(C11 H18 N5 O12 P3) FORMUL 17 HOH *14(H2 O)
HELIX 1 1 ARG A 2 GLY A 7 1 6 HELIX 2 2 GLY A 7 GLU A 20 1 14 HELIX 3 3 ILE A 56 ALA A 74 1 19 HELIX 4 4 GLU A 93 LYS A 112 1 20 HELIX 5 5 GLY A 158 GLU A 170 1 13 HELIX 6 6 GLU A 175 ARG A 187 1 13 HELIX 7 7 ARG A 191 ASP A 193 5 3 HELIX 8 8 TYR A 194 ALA A 202 1 9 HELIX 9 9 GLY A 211 GLY A 224 1 14 HELIX 10 10 SER A 231 LEU A 234 5 4 HELIX 11 11 SER A 237 GLY A 248 1 12 HELIX 12 12 ASN A 250 GLY A 258 1 9 HELIX 13 13 PRO A 269 TRP A 273 5 5 HELIX 14 14 ARG B 2 GLY B 7 1 6 HELIX 15 15 GLY B 7 GLU B 20 1 14 HELIX 16 16 ILE B 56 ASN B 75 1 20 HELIX 17 17 GLU B 93 LYS B 112 1 20 HELIX 18 18 GLY B 158 MET B 169 1 12 HELIX 19 19 GLU B 175 ARG B 187 1 13 HELIX 20 20 ARG B 191 ASP B 193 5 3 HELIX 21 21 TYR B 194 ALA B 202 1 9 HELIX 22 22 GLY B 211 GLY B 224 1 14 HELIX 23 23 SER B 231 LEU B 234 5 4 HELIX 24 24 SER B 237 GLY B 248 1 12 HELIX 25 25 ASN B 250 GLY B 258 1 9 HELIX 26 26 PRO B 269 TRP B 273 5 5
SHEET 1 A 5 ALA A 29 GLU A 32 0 SHEET 2 A 5 LYS A 37 ASN A 46 -1 O LEU A 38 N VAL A 31 SHEET 3 A 5 GLY A 127 THR A 136 -1 O GLY A 134 N LEU A 39 SHEET 4 A 5 LEU A 78 LEU A 88 -1 N TRP A 81 O VAL A 133 SHEET 5 A 5 GLU A 114 LYS A 122 1 O SER A 121 N LEU A 88 SHEET 1 B 6 ALA A 204 ASP A 207 0 SHEET 2 B 6 LEU A 264 HIS A 268 -1 O LEU A 265 N MET A 206 SHEET 3 B 6 SER A 150 SER A 154 -1 N PHE A 152 O PHE A 266 SHEET 4 B 6 MET A 279 GLU A 286 -1 O GLY A 283 N VAL A 151 SHEET 5 B 6 LYS A 226 ILE A 229 -1 N LYS A 226 O GLU A 286 SHEET 6 B 6 VAL A 291 VAL A 293 1 O PHE A 292 N ILE A 229 SHEET 1 C 5 ALA B 29 TYR B 33 0 SHEET 2 C 5 LYS B 36 ASN B 46 -1 O LYS B 36 N TYR B 33 SHEET 3 C 5 GLY B 127 THR B 136 -1 O GLY B 134 N LEU B 39 SHEET 4 C 5 LEU B 78 LEU B 88 -1 N SER B 85 O SER B 129 SHEET 5 C 5 GLU B 114 LYS B 122 1 O GLU B 114 N LYS B 80 SHEET 1 D 6 ALA B 204 ILE B 208 0 SHEET 2 D 6 GLN B 263 HIS B 268 -1 O LEU B 265 N MET B 206 SHEET 3 D 6 SER B 150 VAL B 153 -1 N PHE B 152 O PHE B 266 SHEET 4 D 6 THR B 280 GLU B 286 -1 O ILE B 282 N VAL B 151 SHEET 5 D 6 LYS B 226 ILE B 229 -1 N GLU B 228 O ARG B 284 SHEET 6 D 6 GLY B 290 VAL B 293 1 O PHE B 292 N ILE B 227
SSBOND 1 CYS A 34 CYS B 34 1555 1555 2.03
LINK OD2 ASP A 43 MG MG A 310 1555 1555 2.44 LINK OD1 ASP A 71 MG MG A 313 1555 1555 2.39 LINK OD2 ASP A 71 MG MG A 310 1555 1555 2.47 LINK OD1 ASN A 119 MG MG A 314 1555 1555 2.38 LINK OD2 ASP A 207 MG MG A 313 1555 1555 2.37 LINK OD1 ASP A 210 MG MG A 309 1555 1555 2.40 LINK OD2 ASP A 210 MG MG A 312 1555 1555 2.29 LINK OD1 ASP B 43 MG MG A 314 1555 1555 2.33 LINK OD2 ASP B 43 MG MG B 313 1555 1555 2.34 LINK OD2 ASP B 71 MG MG B 313 1555 1555 2.37 LINK ND2 ASN B 119 MG MG B 311 1555 1555 2.48 LINK OD1 ASP B 207 MG MG B 312 1555 1555 2.33 LINK OD2 ASP B 210 MG MG B 310 1555 1555 2.42 LINK MG MG B 311 O2 TPS A 308 1555 1555 2.35 LINK MG MG B 311 O1G ACP B 307 1555 1555 2.42 LINK MG MG A 314 O3G ACP A 307 1555 1555 2.44 LINK MG MG A 314 O2 TPS B 308 1555 1555 2.32 LINK MG MG B 313 O3G ACP A 307 1555 1555 2.43
CISPEP 1 GLU B 299 PRO B 300 0 -0.11
SITE 1 AC1 1 ASP A 210 SITE 1 AC2 2 ASP A 43 ASP A 71 SITE 1 AC3 2 ASP A 43 ASN B 119 SITE 1 AC4 3 ASP A 210 ASP A 215 HIS A 218 SITE 1 AC5 3 ASP A 27 ASP A 71 ASP A 207 SITE 1 AC6 2 ASN A 119 ASP B 43 SITE 1 AC7 1 ASP B 210 SITE 1 AC8 3 ASP B 27 ASP B 71 ASP B 207 SITE 1 AC9 2 ASP B 43 ASP B 71 SITE 1 BC1 3 ASP B 210 ASP B 215 HIS B 218 SITE 1 BC2 18 ILE A 12 ILE A 24 GLY A 25 ASP A 26 SITE 2 BC2 18 ASP A 27 ASP A 43 ASP A 71 ARG A 142 SITE 3 BC2 18 SER A 209 HIS A 218 HOH A 320 HOH A 322 SITE 4 BC2 18 ILE B 84 TYR B 101 GLY B 117 GLY B 118 SITE 5 BC2 18 ASN B 119 ILE B 120 SITE 1 BC3 7 GLY A 48 HIS A 50 LEU A 164 ASP A 210 SITE 2 BC3 7 GLU A 260 TRP A 303 HIS A 305 SITE 1 BC4 20 ILE A 84 LEU A 86 TYR A 101 GLY A 117 SITE 2 BC4 20 GLY A 118 ASN A 119 ILE A 120 HOH A 318 SITE 3 BC4 20 HOH A 321 ILE B 12 ILE B 24 GLY B 25 SITE 4 BC4 20 ASP B 26 ASP B 27 ASP B 43 ASP B 71 SITE 5 BC4 20 ARG B 142 SER B 209 HIS B 218 HOH B 318 SITE 1 BC5 8 GLY B 48 HIS B 50 LEU B 164 HIS B 185 SITE 2 BC5 8 ASP B 210 GLU B 260 TRP B 303 HIS B 305
CRYST1 60.750 66.843 196.860 90.00 90.00 90.00 P 21 21 21 8
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 0.016461 0.000000 0.000000 0.00000
SCALE2 0.000000 0.014960 0.000000 0.00000
SCALE3 0.000000 0.000000 0.005080 0.00000