10 20 30 40 50 60 70 80 3C6Y - Header ----|----|----|----|----|----|----|----|----|----|----|----|----|----|----|----| Asymmetric UnitHEADER LYASE 06-FEB-08 3C6Y
TITLE HNL FROM HEVEA BRASILIENSIS TO ATOMIC RESOLUTION
COMPND MOL_ID: 1; COMPND 2 MOLECULE: HYDROXYNITRILASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: (S)-ACETONE-CYANOHYDRIN LYASE, (S)-HYDROXYNITRILE COMPND 5 LYASE, OXYNITRILASE; COMPND 6 EC: 4.1.2.37; COMPND 7 ENGINEERED: YES
SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HEVEA BRASILIENSIS; SOURCE 3 ORGANISM_COMMON: PARA RUBBER TREE; SOURCE 4 ORGANISM_TAXID: 3981; SOURCE 5 GENE: HNL; SOURCE 6 EXPRESSION_SYSTEM: PICHIA PASTORIS; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 4922; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: BHIL-D2
KEYWDS ATOMIC RESOLUTION, HYDROXYNITRIL LYASE, CATALYSIS, KEYWDS 2 PROTONATION STATE, AB INITIO CALCULATIONS, SUBSTRATE BINDING
EXPDTA X-RAY DIFFRACTION
AUTHOR A.SCHMIDT
REVDAT 3 24-FEB-09 3C6Y 1 VERSN REVDAT 2 12-AUG-08 3C6Y 1 JRNL REVDAT 1 03-JUN-08 3C6Y 0
JRNL AUTH A.SCHMIDT,K.GRUBER,C.KRATKY,V.S.LAMZIN JRNL TITL ATOMIC RESOLUTION CRYSTAL STRUCTURES AND QUANTUM JRNL TITL 2 CHEMISTRY MEET TO REVEAL SUBTLETIES OF JRNL TITL 3 HYDROXYNITRILE LYASE CATALYSIS JRNL REF J.BIOL.CHEM. V. 283 21827 2008 JRNL REFN ISSN 0021-9258 JRNL PMID 18524775 JRNL DOI 10.1074/JBC.M801056200
REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH J.ZUEGG,K.GRUBER,M.GUGGANIG,U.G.WAGNER,C.KRATKY REMARK 1 TITL THREE-DIMENSIONAL STRUCTURES OF ENZYME-SUBSTRATE REMARK 1 TITL 2 COMPLEXES OF THE HYDROXYNITRILE LYASE FROM HEVEA REMARK 1 TITL 3 BRASILIENSIS REMARK 1 REF PROTEIN SCI. V. 8 1990 1999 REMARK 1 REFN ISSN 0961-8368 REMARK 1 PMID 10548044 REMARK 1 REFERENCE 2 REMARK 1 AUTH K.GRUBER,M.GUGGANIG,U.G.WAGNER,C.KRATKY REMARK 1 TITL ATOMIC RESOLUTION CRYSTAL STRUCTURE OF REMARK 1 TITL 2 HYDROXYNITRILE LYASE FROM HEVEA BRASILIENSIS REMARK 1 REF BIOL.CHEM. V. 380 993 1999 REMARK 1 REFN ISSN 1431-6730 REMARK 1 PMID 10494852 REMARK 1 DOI 10.1515/BC.1999.123
REMARK 2 REMARK 2 RESOLUTION. 1.25 ANGSTROMS.
REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : SHELXL-97 REMARK 3 AUTHORS : G.M.SHELDRICK REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.25 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 15.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 92.5 REMARK 3 CROSS-VALIDATION METHOD : FREE R INITIALLY, FINAL REMARK 3 REFINEMENT AGAINST ALL REMARK 3 ADATA REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (NO CUTOFF). REMARK 3 R VALUE (WORKING + TEST SET, NO CUTOFF) : 0.127 REMARK 3 R VALUE (WORKING SET, NO CUTOFF) : 0.127 REMARK 3 FREE R VALUE (NO CUTOFF) : NULL REMARK 3 FREE R VALUE TEST SET SIZE (%, NO CUTOFF) : NULL REMARK 3 FREE R VALUE TEST SET COUNT (NO CUTOFF) : NULL REMARK 3 TOTAL NUMBER OF REFLECTIONS (NO CUTOFF) : 83123 REMARK 3 REMARK 3 FIT/AGREEMENT OF MODEL FOR DATA WITH F>4SIG(F). REMARK 3 R VALUE (WORKING + TEST SET, F>4SIG(F)) : 0.106 REMARK 3 R VALUE (WORKING SET, F>4SIG(F)) : NULL REMARK 3 FREE R VALUE (F>4SIG(F)) : NULL REMARK 3 FREE R VALUE TEST SET SIZE (%, F>4SIG(F)) : NULL REMARK 3 FREE R VALUE TEST SET COUNT (F>4SIG(F)) : NULL REMARK 3 TOTAL NUMBER OF REFLECTIONS (F>4SIG(F)) : 64103 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4328 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 24 REMARK 3 SOLVENT ATOMS : 550 REMARK 3 REMARK 3 MODEL REFINEMENT. REMARK 3 OCCUPANCY SUM OF NON-HYDROGEN ATOMS : 2552.60 REMARK 3 OCCUPANCY SUM OF HYDROGEN ATOMS : 2013.38 REMARK 3 NUMBER OF DISCRETELY DISORDERED RESIDUES : 34 REMARK 3 NUMBER OF LEAST-SQUARES PARAMETERS : 24616 REMARK 3 NUMBER OF RESTRAINTS : 30456 REMARK 3 REMARK 3 RMS DEVIATIONS FROM RESTRAINT TARGET VALUES. REMARK 3 BOND LENGTHS (A) : 0.012 REMARK 3 ANGLE DISTANCES (A) : 0.028 REMARK 3 SIMILAR DISTANCES (NO TARGET VALUES) (A) : 0.000 REMARK 3 DISTANCES FROM RESTRAINT PLANES (A) : 0.028 REMARK 3 ZERO CHIRAL VOLUMES (A**3) : 0.072 REMARK 3 NON-ZERO CHIRAL VOLUMES (A**3) : 0.079 REMARK 3 ANTI-BUMPING DISTANCE RESTRAINTS (A) : 0.060 REMARK 3 RIGID-BOND ADP COMPONENTS (A**2) : 0.004 REMARK 3 SIMILAR ADP COMPONENTS (A**2) : 0.040 REMARK 3 APPROXIMATELY ISOTROPIC ADPS (A**2) : 0.093 REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED: NULL REMARK 3 REMARK 3 STEREOCHEMISTRY TARGET VALUES : ENGH AND HUBER REMARK 3 SPECIAL CASE: NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: FULL ANISOTROPIC REFINEMENT APPLIED
REMARK 4 REMARK 4 3C6Y COMPLIES WITH FORMAT V. 3.15, 01-DEC-08
REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 13-FEB-08. REMARK 100 THE RCSB ID CODE IS RCSB046418.
REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 06-MAR-05 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : EMBL/DESY, HAMBURG REMARK 200 BEAMLINE : X11 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.8162 REMARK 200 MONOCHROMATOR : SI REMARK 200 OPTICS : MIRROR REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MAR CCD 165 MM REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 83123 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.250 REMARK 200 RESOLUTION RANGE LOW (A) : 15.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 3.500 REMARK 200 R MERGE (I) : 0.05700 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 19.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.25 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.26 REMARK 200 COMPLETENESS FOR SHELL (%) : 60.0 REMARK 200 DATA REDUNDANCY IN SHELL : 3.50 REMARK 200 R MERGE FOR SHELL (I) : 0.54000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 1.500 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MR/RIGID BODY PLACEMENT REMARK 200 SOFTWARE USED: REFMAC (RIGID BODY) REMARK 200 STARTING MODEL: PDB ENTRY 1QJ4 REMARK 200 REMARK 200 REMARK: NULL
REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 55.20 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.75 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 2% PEG400, 2M AMMONIUM SULPHATE, REMARK 280 0.1M HEPES-NA, PH7.5, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 293K
REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 64.10300 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 64.10300 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 23.62450 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 53.05200 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 23.62450 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 53.05200 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 64.10300 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 23.62450 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 53.05200 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 64.10300 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 23.62450 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 53.05200 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL
REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA.
REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4550 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 19020 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -98.7 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 106.10400 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000
REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A3006 LIES ON A SPECIAL POSITION. REMARK 375 HOH A3068 LIES ON A SPECIAL POSITION. REMARK 375 HOH A3138 LIES ON A SPECIAL POSITION. REMARK 375 HOH A3352 LIES ON A SPECIAL POSITION. REMARK 375 HOH A3578 LIES ON A SPECIAL POSITION.
REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1
REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 HIS A 31 CG - ND1 - CE1 ANGL. DEV. = 11.9 DEGREES REMARK 500 HIS A 31 ND1 - CE1 - NE2 ANGL. DEV. = -7.7 DEGREES REMARK 500 GLU A 123 OE1 - CD - OE2 ANGL. DEV. = 9.2 DEGREES REMARK 500 ARG A 154 NE - CZ - NH1 ANGL. DEV. = 4.6 DEGREES REMARK 500 ARG A 154 NE - CZ - NH2 ANGL. DEV. = -7.4 DEGREES REMARK 500 LEU A 178 O - C - N ANGL. DEV. = -11.2 DEGREES REMARK 500 ASP A 225 CB - CG - OD1 ANGL. DEV. = -5.8 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 80 -114.23 50.31 REMARK 500 LYS A 129 -121.15 62.43 REMARK 500 REMARK 500 REMARK: NULL
REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A3196 DISTANCE = 5.10 ANGSTROMS REMARK 525 HOH A3254 DISTANCE = 5.52 ANGSTROMS REMARK 525 HOH A3267 DISTANCE = 5.35 ANGSTROMS REMARK 525 HOH A3495 DISTANCE = 7.10 ANGSTROMS REMARK 525 HOH A3537 DISTANCE = 6.63 ANGSTROMS REMARK 525 HOH A3608 DISTANCE = 7.26 ANGSTROMS
REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 2001 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 2002 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 2003 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 2004 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE BME A 2005 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACN A 1001 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PEG A 1501
REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1QJ4 RELATED DB: PDB REMARK 900 HNL AT ATOMIC RESOLUTION REMARK 900 RELATED ID: 7YAS RELATED DB: PDB REMARK 900 HNL LOW TEMPERATURE NATIVE STRUCTURE REMARK 900 RELATED ID: 3C6X RELATED DB: PDB REMARK 900 HNL FROM HEVEA BRASILIENSIS TO ATOMIC RESOLUTION, NATIVE REMARK 900 WITH PEG200 REMARK 900 RELATED ID: 3C6Z RELATED DB: PDB REMARK 900 HNL FROM HEVEA BRASILIENSIS TO ATOMIC RESOLUTION, COMPLEX REMARK 900 WITH ISOPROPANOL REMARK 900 RELATED ID: 3C70 RELATED DB: PDB REMARK 900 HNL FROM HEVEA BRASILIENSIS TO ATOMIC RESOLUTION, COMPLEX REMARK 900 WITH RHODANIDE (SCN)
DBREF 3C6Y A 1 257 UNP P52704 HNL_HEVBR 1 257
SEQRES 1 A 257 MET ALA PHE ALA HIS PHE VAL LEU ILE HIS THR ILE CYS SEQRES 2 A 257 HIS GLY ALA TRP ILE TRP HIS LYS LEU LYS PRO LEU LEU SEQRES 3 A 257 GLU ALA LEU GLY HIS LYS VAL THR ALA LEU ASP LEU ALA SEQRES 4 A 257 ALA SER GLY VAL ASP PRO ARG GLN ILE GLU GLU ILE GLY SEQRES 5 A 257 SER PHE ASP GLU TYR SER GLU PRO LEU LEU THR PHE LEU SEQRES 6 A 257 GLU ALA LEU PRO PRO GLY GLU LYS VAL ILE LEU VAL GLY SEQRES 7 A 257 GLU SER CYS GLY GLY LEU ASN ILE ALA ILE ALA ALA ASP SEQRES 8 A 257 LYS TYR CYS GLU LYS ILE ALA ALA ALA VAL PHE HIS ASN SEQRES 9 A 257 SER VAL LEU PRO ASP THR GLU HIS CYS PRO SER TYR VAL SEQRES 10 A 257 VAL ASP LYS LEU MET GLU VAL PHE PRO ASP TRP LYS ASP SEQRES 11 A 257 THR THR TYR PHE THR TYR THR LYS ASP GLY LYS GLU ILE SEQRES 12 A 257 THR GLY LEU LYS LEU GLY PHE THR LEU LEU ARG GLU ASN SEQRES 13 A 257 LEU TYR THR LEU CYS GLY PRO GLU GLU TYR GLU LEU ALA SEQRES 14 A 257 LYS MET LEU THR ARG LYS GLY SER LEU PHE GLN ASN ILE SEQRES 15 A 257 LEU ALA LYS ARG PRO PHE PHE THR LYS GLU GLY TYR GLY SEQRES 16 A 257 SER ILE LYS LYS ILE TYR VAL TRP THR ASP GLN ASP GLU SEQRES 17 A 257 ILE PHE LEU PRO GLU PHE GLN LEU TRP GLN ILE GLU ASN SEQRES 18 A 257 TYR LYS PRO ASP LYS VAL TYR LYS VAL GLU GLY GLY ASP SEQRES 19 A 257 HIS LYS LEU GLN LEU THR LYS THR LYS GLU ILE ALA GLU SEQRES 20 A 257 ILE LEU GLN GLU VAL ALA ASP THR TYR ASN
HET SO4 A2001 5 HET SO4 A2002 5 HET SO4 A2003 5 HET SO4 A2004 5 HET BME A2005 4 HET ACN A1001 8 HET PEG A1501 7
HETNAM SO4 SULFATE ION HETNAM BME BETA-MERCAPTOETHANOL HETNAM ACN ACETONE HETNAM PEG DI(HYDROXYETHYL)ETHER
FORMUL 2 SO4 4(O4 S 2-) FORMUL 6 BME C2 H6 O S FORMUL 7 ACN C3 H6 O FORMUL 8 PEG C4 H10 O3 FORMUL 9 HOH *534(H2 O)
HELIX 1 1 GLY A 15 HIS A 20 5 6 HELIX 2 2 LYS A 21 LEU A 29 1 9 HELIX 3 3 GLN A 47 ILE A 51 5 5 HELIX 4 4 SER A 53 SER A 58 1 6 HELIX 5 5 SER A 58 ALA A 67 1 10 HELIX 6 6 CYS A 81 CYS A 94 1 14 HELIX 7 7 SER A 115 PHE A 125 1 11 HELIX 8 8 GLY A 149 LEU A 157 1 9 HELIX 9 9 GLY A 162 THR A 173 1 12 HELIX 10 10 PHE A 179 ARG A 186 1 8 HELIX 11 11 GLY A 193 ILE A 197 5 5 HELIX 12 12 LEU A 211 TYR A 222 1 12 HELIX 13 13 LYS A 236 LYS A 241 1 6 HELIX 14 14 LYS A 241 TYR A 256 1 16
SHEET 1 A 6 LYS A 32 LEU A 36 0 SHEET 2 A 6 HIS A 5 ILE A 9 1 N LEU A 8 O THR A 34 SHEET 3 A 6 VAL A 74 SER A 80 1 O VAL A 77 N ILE A 9 SHEET 4 A 6 ILE A 97 SER A 105 1 O VAL A 101 N LEU A 76 SHEET 5 A 6 LYS A 199 TRP A 203 1 O VAL A 202 N PHE A 102 SHEET 6 A 6 LYS A 226 LYS A 229 1 O LYS A 226 N TYR A 201 SHEET 1 B 3 THR A 132 LYS A 138 0 SHEET 2 B 3 LYS A 141 LYS A 147 -1 O ILE A 143 N TYR A 136 SHEET 3 B 3 GLY A 176 SER A 177 -1 O GLY A 176 N LEU A 146
LINK SG BCYS A 94 S2 BBME A2005 1555 1555 2.11
SITE 1 AC1 9 LYS A 23 LYS A 170 HOH A3019 HOH A3134 SITE 2 AC1 9 HOH A3172 HOH A3249 HOH A3444 HOH A3495 SITE 3 AC1 9 HOH A3530 SITE 1 AC2 11 THR A 137 LYS A 138 ASP A 139 GLY A 140 SITE 2 AC2 11 GLY A 232 GLY A 233 LYS A 241 HOH A3224 SITE 3 AC2 11 HOH A3236 HOH A3340 HOH A3380 SITE 1 AC3 8 LYS A 141 ASN A 181 LYS A 185 HOH A3115 SITE 2 AC3 8 HOH A3128 HOH A3142 HOH A3421 HOH A3488 SITE 1 AC4 5 THR A 110 GLY A 195 TYR A 222 HOH A3257 SITE 2 AC4 5 HOH A3471 SITE 1 AC5 4 CYS A 94 GLU A 95 GLU A 192 HOH A3356 SITE 1 AC6 8 THR A 11 ILE A 12 SER A 80 TRP A 128 SITE 2 AC6 8 LEU A 148 LEU A 157 HIS A 235 HOH A3050 SITE 1 AC7 7 GLN A 47 LYS A 147 ARG A 174 LYS A 175 SITE 2 AC7 7 HOH A3149 HOH A3324 HOH A3455
CRYST1 47.249 106.104 128.206 90.00 90.00 90.00 C 2 2 21 8
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 0.021164 0.000000 0.000000 0.00000
SCALE2 0.000000 0.009425 0.000000 0.00000
SCALE3 0.000000 0.000000 0.007800 0.00000