3BWD - Header Asymmetric Unit

HEADER PLANT PROTEIN 09-JAN-08 3BWD

TITLE CRYSTAL STRUCTURE OF THE PLANT RHO PROTEIN ROP5

COMPND MOL_ID: 1; COMPND 2 MOLECULE: RAC-LIKE GTP-BINDING PROTEIN ARAC6; COMPND 3 CHAIN: D; COMPND 4 FRAGMENT: RESIDUES 1-180; COMPND 5 SYNONYM: GTPASE PROTEIN ROP5, PLANT RHO PROTEIN ROP5; COMPND 6 ENGINEERED: YES

SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ARABIDOPSIS THALIANA; SOURCE 3 ORGANISM_COMMON: THALE CRESS; SOURCE 4 ORGANISM_TAXID: 3702; SOURCE 5 GENE: ARAC6, RAC2, ROP5; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PGEX-4T-1

KEYWDS G DOMAIN, CYTOPLASM, GTP-BINDING, LIPOPROTEIN, MEMBRANE, KEYWDS 2 METHYLATION, NUCLEOTIDE-BINDING, PRENYLATION, ----, PLANT KEYWDS 3 PROTEIN

EXPDTA X-RAY DIFFRACTION

AUTHOR C.THOMAS,A.BERKEN

REVDAT 2 24-FEB-09 3BWD 1 VERSN REVDAT 1 11-MAR-08 3BWD 0

JRNL AUTH C.THOMAS,A.BERKEN JRNL TITL CRYSTAL STRUCTURE OF THE PLANT RHO PROTEIN ROP5 JRNL REF TO BE PUBLISHED JRNL REFN

REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH C.THOMAS,A.BERKEN REMARK 1 TITL PURIFICATION, CRYSTALLIZATION AND PRELIMINARY REMARK 1 TITL 2 X-RAY DIFFRACTION ANALYSIS OF THE PLANT RHO REMARK 1 TITL 3 PROTEIN ROP5 REMARK 1 REF ACTA CRYSTALLOGR.,SECT.F V. 63 1070 2007 REMARK 1 REFN ESSN 1744-3091 REMARK 1 PMID 18084097

REMARK 2 REMARK 2 RESOLUTION. 1.53 ANGSTROMS.

REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.53 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 24.72 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 22637 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.248 REMARK 3 R VALUE (WORKING SET) : 0.247 REMARK 3 FREE R VALUE : 0.265 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1191 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.53 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.57 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1442 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.00 REMARK 3 BIN R VALUE (WORKING SET) : 0.3620 REMARK 3 BIN FREE R VALUE SET COUNT : 76 REMARK 3 BIN FREE R VALUE : 0.3740 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1185 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 29 REMARK 3 SOLVENT ATOMS : 48 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 17.47 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.00000 REMARK 3 B22 (A**2) : 0.01000 REMARK 3 B33 (A**2) : -0.01000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.102 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.097 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): NULL REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): NULL REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.930 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.925 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1239 ; 0.027 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 1702 ; 1.957 ; 1.993 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 164 ;27.915 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 38 ;32.732 ;24.474 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 182 ;16.466 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 3 ;21.295 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 205 ; 0.153 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 908 ; 0.009 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 552 ; 0.240 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 883 ; 0.329 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 42 ; 0.152 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 32 ; 0.238 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 7 ; 0.114 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 811 ; 1.180 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1299 ; 1.838 ; 2.000 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 428 ; 2.739 ; 3.000 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 402 ; 3.923 ; 4.500 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE REMARK 3 RIDING POSITIONS

REMARK 4 REMARK 4 3BWD COMPLIES WITH FORMAT V. 3.15, 01-DEC-08

REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 10-JAN-08. REMARK 100 THE RCSB ID CODE IS RCSB046038.

REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 21-SEP-06 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X06SA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97634 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 225 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 23836 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.530 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : NULL REMARK 200 DATA REDUNDANCY : 2.900 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.53 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.60 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : 1.90 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: ROP4-GDP OF MODEL WITH PDB ID 2NTY REMARK 200 REMARK 200 REMARK: NULL

REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 40.63 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.07 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 28%(W/V) PEG 3000, 100 MM MES PH REMARK 280 5.5, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K

REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 20.19500 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL

REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA.

REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000

REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY D -1 REMARK 465 SER D 0 REMARK 465 MET D 1 REMARK 465 SER D 2 REMARK 465 ALA D 3 REMARK 465 SER D 4 REMARK 465 THR D 33 REMARK 465 ASP D 34 REMARK 465 TYR D 35 REMARK 465 VAL D 36 REMARK 465 PRO D 37 REMARK 465 THR D 38 REMARK 465 VAL D 39 REMARK 465 PHE D 40 REMARK 465 ASP D 41 REMARK 465 ASN D 42 REMARK 465 VAL D 49 REMARK 465 ASN D 50 REMARK 465 GLY D 51 REMARK 465 ALA D 52 REMARK 465 THR D 53 REMARK 465 VAL D 54 REMARK 465 ASN D 55 REMARK 465 GLN D 64 REMARK 465 PRO D 133 REMARK 465 GLY D 134

REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS(M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG D 5 CG CD NE CZ NH1 NH2 REMARK 470 PHE D 6 CG CD1 CD2 CE1 CE2 CZ REMARK 470 VAL D 47 CG1 CG2 REMARK 470 VAL D 48 CG1 CG2 REMARK 470 GLU D 65 CG CD OE1 OE2 REMARK 470 ASP D 66 CG OD1 OD2 REMARK 470 ARG D 76 CG CD NE CZ NH1 NH2 REMARK 470 ASP D 79 CG OD1 OD2 REMARK 470 LYS D 90 CG CD CE NZ REMARK 470 GLU D 94 CG CD OE1 OE2 REMARK 470 SER D 97 OG REMARK 470 LYS D 98 CG CD CE NZ REMARK 470 LYS D 105 CG CD CE NZ REMARK 470 LYS D 126 CG CD CE NZ REMARK 470 VAL D 136 CG1 CG2 REMARK 470 ASP D 171 CG OD1 OD2 REMARK 470 ARG D 175 CG CD NE CZ NH1 NH2 REMARK 470 GLN D 179 CG CD OE1 NE2

REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 PHE D 6 C PHE D 6 O -0.137 REMARK 500 GLY D 13 C GLY D 13 O -0.106 REMARK 500 SER D 25 CB SER D 25 OG -0.124 REMARK 500 SER D 28 CB SER D 28 OG -0.079 REMARK 500 TYR D 67 CD1 TYR D 67 CE1 -0.100 REMARK 500 LYS D 147 CD LYS D 147 CE -0.157 REMARK 500 CYS D 158 CB CYS D 158 SG -0.163 REMARK 500 VAL D 177 CB VAL D 177 CG2 -0.254 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 CYS D 9 CA - CB - SG ANGL. DEV. = 14.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA D 108 60.18 -152.86 REMARK 500 GLN D 163 -4.63 73.38 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 GLN D 179 PRO D 180 30.90 REMARK 500 REMARK 500 REMARK: NULL

REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG D 181 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 THR D 20 OG1 REMARK 620 2 GDP D 200 O2B 98.5 REMARK 620 3 HOH D 210 O 92.1 87.7 REMARK 620 4 HOH D 209 O 86.7 93.5 178.4 REMARK 620 5 HOH D 225 O 92.0 169.0 88.8 90.2 REMARK 620 6 HOH D 224 O 171.7 89.2 91.1 89.9 80.4 REMARK 620 N 1 2 3 4 5

REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG D 181 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GDP D 200

REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2NTX RELATED DB: PDB REMARK 900 RELATED ID: 2NTY RELATED DB: PDB

DBREF 3BWD D 1 180 UNP Q9SBJ6 RAC6_ARATH 1 180

SEQADV 3BWD GLY D -1 UNP Q9SBJ6 EXPRESSION TAG SEQADV 3BWD SER D 0 UNP Q9SBJ6 EXPRESSION TAG

SEQRES 1 D 182 GLY SER MET SER ALA SER ARG PHE ILE LYS CYS VAL THR SEQRES 2 D 182 VAL GLY ASP GLY ALA VAL GLY LYS THR CYS LEU LEU ILE SEQRES 3 D 182 SER TYR THR SER ASN THR PHE PRO THR ASP TYR VAL PRO SEQRES 4 D 182 THR VAL PHE ASP ASN PHE SER ALA ASN VAL VAL VAL ASN SEQRES 5 D 182 GLY ALA THR VAL ASN LEU GLY LEU TRP ASP THR ALA GLY SEQRES 6 D 182 GLN GLU ASP TYR ASN ARG LEU ARG PRO LEU SER TYR ARG SEQRES 7 D 182 GLY ALA ASP VAL PHE ILE LEU ALA PHE SER LEU ILE SER SEQRES 8 D 182 LYS ALA SER TYR GLU ASN VAL SER LYS LYS TRP ILE PRO SEQRES 9 D 182 GLU LEU LYS HIS TYR ALA PRO GLY VAL PRO ILE VAL LEU SEQRES 10 D 182 VAL GLY THR LYS LEU ASP LEU ARG ASP ASP LYS GLN PHE SEQRES 11 D 182 PHE ILE ASP HIS PRO GLY ALA VAL PRO ILE THR THR VAL SEQRES 12 D 182 GLN GLY GLU GLU LEU LYS LYS LEU ILE GLY ALA PRO ALA SEQRES 13 D 182 TYR ILE GLU CYS SER SER LYS SER GLN GLU ASN VAL LYS SEQRES 14 D 182 GLY VAL PHE ASP ALA ALA ILE ARG VAL VAL LEU GLN PRO

HET MG D 181 1 HET GDP D 200 28

HETNAM MG MAGNESIUM ION HETNAM GDP GUANOSINE-5'-DIPHOSPHATE

FORMUL 2 MG MG 2+ FORMUL 3 GDP C10 H15 N5 O11 P2 FORMUL 4 HOH *48(H2 O)

HELIX 1 1 GLY D 18 ASN D 29 1 12 HELIX 2 2 LEU D 70 ARG D 76 5 7 HELIX 3 3 SER D 89 LYS D 99 1 11 HELIX 4 4 LYS D 99 ALA D 108 1 10 HELIX 5 5 LYS D 119 ASP D 124 1 6 HELIX 6 6 ASP D 125 HIS D 132 1 8 HELIX 7 7 THR D 139 GLY D 151 1 13 HELIX 8 8 ASN D 165 LEU D 178 1 14

SHEET 1 A 5 GLY D 57 TRP D 59 0 SHEET 2 A 5 LYS D 8 VAL D 12 1 N CYS D 9 O TRP D 59 SHEET 3 A 5 VAL D 80 SER D 86 1 O ALA D 84 N VAL D 12 SHEET 4 A 5 ILE D 113 THR D 118 1 O THR D 118 N PHE D 85 SHEET 5 A 5 ALA D 154 GLU D 157 1 O ALA D 154 N LEU D 115

LINK OG1 THR D 20 MG MG D 181 1555 1555 2.08 LINK MG MG D 181 O2B GDP D 200 1555 1555 2.05 LINK MG MG D 181 O HOH D 210 1555 1555 2.08 LINK MG MG D 181 O HOH D 209 1555 1555 2.24 LINK MG MG D 181 O HOH D 225 1555 1555 2.16 LINK MG MG D 181 O HOH D 224 1555 1555 2.02

SITE 1 AC1 5 THR D 20 HOH D 209 HOH D 210 HOH D 224 SITE 2 AC1 5 HOH D 225 SITE 1 AC2 16 ALA D 16 GLY D 18 LYS D 19 THR D 20 SITE 2 AC2 16 CYS D 21 PHE D 31 LYS D 119 ASP D 121 SITE 3 AC2 16 LEU D 122 SER D 159 SER D 160 LYS D 161 SITE 4 AC2 16 HOH D 208 HOH D 210 HOH D 224 HOH D 235

CRYST1 36.420 40.390 57.180 90.00 102.60 90.00 P 1 21 1 2

ORIGX1 1.000000 0.000000 0.000000 0.00000

ORIGX2 0.000000 1.000000 0.000000 0.00000

ORIGX3 0.000000 0.000000 1.000000 0.00000

SCALE1 0.027457 0.000000 0.006136 0.00000

SCALE2 0.000000 0.024759 0.000000 0.00000

SCALE3 0.000000 0.000000 0.017920 0.00000