10 20 30 40 50 60 70 80 3ARN - Header ----|----|----|----|----|----|----|----|----|----|----|----|----|----|----|----| Asymmetric UnitHEADER HYDROLASE/HYDROLASE INHIBITOR 03-DEC-10 3ARN
TITLE HUMAN DUTPASE IN COMPLEX WITH NOVEL URACIL DERIVATIVE
COMPND MOL_ID: 1; COMPND 2 MOLECULE: DEOXYURIDINE 5'-TRIPHOSPHATE NUCLEOTIDOHYDROLASE; COMPND 3 CHAIN: A, B, C; COMPND 4 SYNONYM: DUT-N, DUTPASE, DUTP PYROPHOSPHATASE; COMPND 5 EC: 3.6.1.23; COMPND 6 ENGINEERED: YES
SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PET19B
KEYWDS HYDROLASE, HYDROLASE-HYDROLASE INHIBITOR COMPLEX
EXPDTA X-RAY DIFFRACTION
AUTHOR K.T.CHONG,S.MIYAHARA,H.MIYAKOSHI,M.FUKUOKA
REVDAT 2 30-MAY-12 3ARN 1 JRNL VERSN REVDAT 1 15-DEC-10 3ARN 0
JRNL AUTH S.MIYAHARA,H.MIYAKOSHI,T.YOKOGAWA,K.T.CHONG,J.TAGUCHI, JRNL AUTH 2 T.MUTO,K.ENDOH,W.YANO,T.WAKASA,H.UENO,Y.TAKAO,A.FUJIOKA, JRNL AUTH 3 A.HASHIMOTO,K.ITOU,K.YAMAMURA,M.NOMURA,H.NAGASAWA,S.SHUTO, JRNL AUTH 4 M.FUKUOKA JRNL TITL DISCOVERY OF A NOVEL CLASS OF POTENT HUMAN DEOXYURIDINE JRNL TITL 2 TRIPHOSPHATASE INHIBITORS REMARKABLY ENHANCING THE ANTITUMOR JRNL TITL 3 ACTIVITY OF THYMIDYLATE SYNTHASE INHIBITORS JRNL REF J.MED.CHEM. V. 55 2970 2012 JRNL REFN ISSN 0022-2623 JRNL PMID 22339362 JRNL DOI 10.1021/JM201628Y
REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH H.MIYAKOSHI,S.MIYAHARA,K.T.CHONG,M.FUKUOKA REMARK 1 TITL DISCOVERY OF NOVEL URACIL DERIVATIVES AS POTENT HUMAN REMARK 1 TITL 2 DUTPASE INHIBITORS REMARK 1 REF TO BE PUBLISHED REMARK 1 REFN
REMARK 2 REMARK 2 RESOLUTION. 1.80 ANGSTROMS.
REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0072 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 58.53 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 3 NUMBER OF REFLECTIONS : 54568 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.172 REMARK 3 R VALUE (WORKING SET) : 0.171 REMARK 3 FREE R VALUE : 0.198 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 2911 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.80 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.85 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3946 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.83 REMARK 3 BIN R VALUE (WORKING SET) : 0.2570 REMARK 3 BIN FREE R VALUE SET COUNT : 187 REMARK 3 BIN FREE R VALUE : 0.3160 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2922 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 84 REMARK 3 SOLVENT ATOMS : 421 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 17.22 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.00000 REMARK 3 B22 (A**2) : 0.00000 REMARK 3 B33 (A**2) : 0.00000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.091 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.050 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 1.544 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.954 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.941 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3068 ; 0.032 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4150 ; 2.443 ; 1.999 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 372 ; 6.511 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 138 ;29.413 ;22.826 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 498 ;12.939 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 27 ;21.599 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 441 ; 0.481 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2337 ; 0.015 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1857 ; 1.525 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2970 ; 2.466 ; 2.000 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1211 ; 4.055 ; 3.000 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1180 ; 6.164 ; 4.500 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS
REMARK 4 REMARK 4 3ARN COMPLIES WITH FORMAT V. 3.30, 13-JUL-11
REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 06-DEC-10. REMARK 100 THE RCSB ID CODE IS RCSB029610.
REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-JUL-06 REMARK 200 TEMPERATURE (KELVIN) : 98 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SPRING-8 REMARK 200 BEAMLINE : BL32B2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU RAXIS V REMARK 200 INTENSITY-INTEGRATION SOFTWARE : CRYSTALCLEAR REMARK 200 DATA SCALING SOFTWARE : CRYSTALCLEAR REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 57479 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.800 REMARK 200 RESOLUTION RANGE LOW (A) : 60.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 200 DATA REDUNDANCY : 6.970 REMARK 200 R MERGE (I) : 0.04000 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.86 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.1 REMARK 200 DATA REDUNDANCY IN SHELL : 6.37 REMARK 200 R MERGE FOR SHELL (I) : 0.11900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 11.800 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL
REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 57.27 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.88 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 15~20% PEG 4000, 50MM TRIS, 0.1M REMARK 280 MAGNESIUM CHLORIDE, PH 7.5, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 298K
REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 41.20200 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 44.79300 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 41.57350 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 44.79300 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 41.20200 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 41.57350 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL
REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA.
REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 9570 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 15130 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -48.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, C, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000
REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 PRO A 2 REMARK 465 CYS A 3 REMARK 465 SER A 4 REMARK 465 GLU A 5 REMARK 465 GLU A 6 REMARK 465 THR A 7 REMARK 465 PRO A 8 REMARK 465 ALA A 9 REMARK 465 ILE A 10 REMARK 465 SER A 11 REMARK 465 PRO A 12 REMARK 465 SER A 13 REMARK 465 LYS A 14 REMARK 465 ARG A 15 REMARK 465 ALA A 16 REMARK 465 ARG A 17 REMARK 465 PRO A 18 REMARK 465 ALA A 19 REMARK 465 GLU A 20 REMARK 465 VAL A 21 REMARK 465 GLY A 22 REMARK 465 GLY A 23 REMARK 465 ASP A 149 REMARK 465 ASP A 150 REMARK 465 THR A 151 REMARK 465 GLU A 152 REMARK 465 ARG A 153 REMARK 465 GLY A 154 REMARK 465 SER A 155 REMARK 465 GLY A 156 REMARK 465 GLY A 157 REMARK 465 PHE A 158 REMARK 465 GLY A 159 REMARK 465 SER A 160 REMARK 465 THR A 161 REMARK 465 GLY A 162 REMARK 465 LYS A 163 REMARK 465 ASN A 164 REMARK 465 MET B 1 REMARK 465 PRO B 2 REMARK 465 CYS B 3 REMARK 465 SER B 4 REMARK 465 GLU B 5 REMARK 465 GLU B 6 REMARK 465 THR B 7 REMARK 465 PRO B 8 REMARK 465 ALA B 9 REMARK 465 ILE B 10 REMARK 465 SER B 11 REMARK 465 PRO B 12 REMARK 465 SER B 13 REMARK 465 LYS B 14 REMARK 465 ARG B 15 REMARK 465 ALA B 16 REMARK 465 ARG B 17 REMARK 465 PRO B 18 REMARK 465 ALA B 19 REMARK 465 GLU B 20 REMARK 465 VAL B 21 REMARK 465 GLY B 22 REMARK 465 GLY B 23 REMARK 465 ASP B 149 REMARK 465 ASP B 150 REMARK 465 THR B 151 REMARK 465 GLU B 152 REMARK 465 ARG B 153 REMARK 465 GLY B 154 REMARK 465 SER B 155 REMARK 465 GLY B 156 REMARK 465 GLY B 157 REMARK 465 PHE B 158 REMARK 465 GLY B 159 REMARK 465 SER B 160 REMARK 465 THR B 161 REMARK 465 GLY B 162 REMARK 465 LYS B 163 REMARK 465 ASN B 164 REMARK 465 MET C 1 REMARK 465 PRO C 2 REMARK 465 CYS C 3 REMARK 465 SER C 4 REMARK 465 GLU C 5 REMARK 465 GLU C 6 REMARK 465 THR C 7 REMARK 465 PRO C 8 REMARK 465 ALA C 9 REMARK 465 ILE C 10 REMARK 465 SER C 11 REMARK 465 PRO C 12 REMARK 465 SER C 13 REMARK 465 LYS C 14 REMARK 465 ARG C 15 REMARK 465 ALA C 16 REMARK 465 ARG C 17 REMARK 465 PRO C 18 REMARK 465 ALA C 19 REMARK 465 GLU C 20 REMARK 465 VAL C 21 REMARK 465 GLY C 22 REMARK 465 GLY C 23 REMARK 465 ASP C 149 REMARK 465 ASP C 150 REMARK 465 THR C 151 REMARK 465 GLU C 152 REMARK 465 ARG C 153 REMARK 465 GLY C 154 REMARK 465 SER C 155 REMARK 465 GLY C 156 REMARK 465 GLY C 157 REMARK 465 PHE C 158 REMARK 465 GLY C 159 REMARK 465 SER C 160 REMARK 465 THR C 161 REMARK 465 GLY C 162 REMARK 465 LYS C 163 REMARK 465 ASN C 164
REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 98 -122.70 49.72 REMARK 500 TYR A 139 75.64 -119.08 REMARK 500 ALA B 98 -124.97 52.14 REMARK 500 TYR B 139 77.71 -115.90 REMARK 500 ALA C 98 -124.04 50.64 REMARK 500 TYR C 139 78.80 -115.74 REMARK 500 REMARK 500 REMARK: NULL
REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 168 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU B 135 OE1 REMARK 620 2 GLU C 135 OE1 112.8 REMARK 620 3 GLU A 135 OE1 111.9 114.7 REMARK 620 4 HOH B 413 O 108.2 105.3 103.0 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 166 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 95 OD2 REMARK 620 2 ASP A 95 OD2 104.3 REMARK 620 3 ASP C 95 OD2 99.1 98.1 REMARK 620 4 HOH C 253 O 125.0 114.5 111.7 REMARK 620 5 HOH A 250 O 66.0 60.0 61.9 169.0 REMARK 620 6 HOH A 251 O 153.1 61.9 63.0 81.7 87.3 REMARK 620 7 HOH B 255 O 64.9 155.5 64.2 88.6 95.9 117.4 REMARK 620 8 HOH B 252 O 74.9 64.9 159.0 87.6 97.7 114.0 127.2 REMARK 620 N 1 2 3 4 5 6 7
REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MSJ A 165 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 166 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 167 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 168 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MSJ B 165 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG B 166 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG B 167 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MSJ C 165 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG C 166
REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3ARA RELATED DB: PDB REMARK 900 RELATED ID: 2HQU RELATED DB: PDB
REMARK 999 REMARK 999 SEQUENCE REMARK 999 THE SEQUENCE DATABASE IS ISOFORM 2 (P33316-2)
DBREF 3ARN A 1 164 UNP P33316 DUT_HUMAN 1 164 DBREF 3ARN B 1 164 UNP P33316 DUT_HUMAN 1 164 DBREF 3ARN C 1 164 UNP P33316 DUT_HUMAN 1 164
SEQRES 1 A 164 MET PRO CYS SER GLU GLU THR PRO ALA ILE SER PRO SER SEQRES 2 A 164 LYS ARG ALA ARG PRO ALA GLU VAL GLY GLY MET GLN LEU SEQRES 3 A 164 ARG PHE ALA ARG LEU SER GLU HIS ALA THR ALA PRO THR SEQRES 4 A 164 ARG GLY SER ALA ARG ALA ALA GLY TYR ASP LEU TYR SER SEQRES 5 A 164 ALA TYR ASP TYR THR ILE PRO PRO MET GLU LYS ALA VAL SEQRES 6 A 164 VAL LYS THR ASP ILE GLN ILE ALA LEU PRO SER GLY CYS SEQRES 7 A 164 TYR GLY ARG VAL ALA PRO ARG SER GLY LEU ALA ALA LYS SEQRES 8 A 164 HIS PHE ILE ASP VAL GLY ALA GLY VAL ILE ASP GLU ASP SEQRES 9 A 164 TYR ARG GLY ASN VAL GLY VAL VAL LEU PHE ASN PHE GLY SEQRES 10 A 164 LYS GLU LYS PHE GLU VAL LYS LYS GLY ASP ARG ILE ALA SEQRES 11 A 164 GLN LEU ILE CYS GLU ARG ILE PHE TYR PRO GLU ILE GLU SEQRES 12 A 164 GLU VAL GLN ALA LEU ASP ASP THR GLU ARG GLY SER GLY SEQRES 13 A 164 GLY PHE GLY SER THR GLY LYS ASN SEQRES 1 B 164 MET PRO CYS SER GLU GLU THR PRO ALA ILE SER PRO SER SEQRES 2 B 164 LYS ARG ALA ARG PRO ALA GLU VAL GLY GLY MET GLN LEU SEQRES 3 B 164 ARG PHE ALA ARG LEU SER GLU HIS ALA THR ALA PRO THR SEQRES 4 B 164 ARG GLY SER ALA ARG ALA ALA GLY TYR ASP LEU TYR SER SEQRES 5 B 164 ALA TYR ASP TYR THR ILE PRO PRO MET GLU LYS ALA VAL SEQRES 6 B 164 VAL LYS THR ASP ILE GLN ILE ALA LEU PRO SER GLY CYS SEQRES 7 B 164 TYR GLY ARG VAL ALA PRO ARG SER GLY LEU ALA ALA LYS SEQRES 8 B 164 HIS PHE ILE ASP VAL GLY ALA GLY VAL ILE ASP GLU ASP SEQRES 9 B 164 TYR ARG GLY ASN VAL GLY VAL VAL LEU PHE ASN PHE GLY SEQRES 10 B 164 LYS GLU LYS PHE GLU VAL LYS LYS GLY ASP ARG ILE ALA SEQRES 11 B 164 GLN LEU ILE CYS GLU ARG ILE PHE TYR PRO GLU ILE GLU SEQRES 12 B 164 GLU VAL GLN ALA LEU ASP ASP THR GLU ARG GLY SER GLY SEQRES 13 B 164 GLY PHE GLY SER THR GLY LYS ASN SEQRES 1 C 164 MET PRO CYS SER GLU GLU THR PRO ALA ILE SER PRO SER SEQRES 2 C 164 LYS ARG ALA ARG PRO ALA GLU VAL GLY GLY MET GLN LEU SEQRES 3 C 164 ARG PHE ALA ARG LEU SER GLU HIS ALA THR ALA PRO THR SEQRES 4 C 164 ARG GLY SER ALA ARG ALA ALA GLY TYR ASP LEU TYR SER SEQRES 5 C 164 ALA TYR ASP TYR THR ILE PRO PRO MET GLU LYS ALA VAL SEQRES 6 C 164 VAL LYS THR ASP ILE GLN ILE ALA LEU PRO SER GLY CYS SEQRES 7 C 164 TYR GLY ARG VAL ALA PRO ARG SER GLY LEU ALA ALA LYS SEQRES 8 C 164 HIS PHE ILE ASP VAL GLY ALA GLY VAL ILE ASP GLU ASP SEQRES 9 C 164 TYR ARG GLY ASN VAL GLY VAL VAL LEU PHE ASN PHE GLY SEQRES 10 C 164 LYS GLU LYS PHE GLU VAL LYS LYS GLY ASP ARG ILE ALA SEQRES 11 C 164 GLN LEU ILE CYS GLU ARG ILE PHE TYR PRO GLU ILE GLU SEQRES 12 C 164 GLU VAL GLN ALA LEU ASP ASP THR GLU ARG GLY SER GLY SEQRES 13 C 164 GLY PHE GLY SER THR GLY LYS ASN
HET MSJ A 165 26 HET MG A 166 1 HET MG A 167 1 HET MG A 168 1 HET MSJ B 165 26 HET MG B 166 1 HET MG B 167 1 HET MSJ C 165 26 HET MG C 166 1
HETNAM MSJ N-{5-[(2,4-DIOXO-3,4-DIHYDROPYRIMIDIN-1(2H)-YL) HETNAM 2 MSJ METHOXY]-2-METHYLPENTAN-2-YL}BENZENESULFONAMIDE HETNAM MG MAGNESIUM ION
FORMUL 4 MSJ 3(C17 H23 N3 O5 S) FORMUL 5 MG 6(MG 2+) FORMUL 13 HOH *421(H2 O)
HELIX 1 1 ARG A 85 PHE A 93 1 9 HELIX 2 2 ARG B 85 PHE B 93 1 9 HELIX 3 3 ARG C 85 PHE C 93 1 9
SHEET 1 A 3 ILE A 70 ALA A 73 0 SHEET 2 A 3 LEU A 26 ARG A 30 -1 N ARG A 27 O ALA A 73 SHEET 3 A 3 ILE B 142 GLU B 144 1 O GLU B 143 N LEU A 26 SHEET 1 B 4 GLY A 47 TYR A 51 0 SHEET 2 B 4 ARG A 128 PHE A 138 -1 O LEU A 132 N TYR A 48 SHEET 3 B 4 ARG C 128 ARG C 136 -1 O ARG C 136 N ARG A 136 SHEET 4 B 4 GLY C 47 TYR C 51 -1 N LEU C 50 O ALA C 130 SHEET 1 C 6 VAL A 100 ILE A 101 0 SHEET 2 C 6 CYS A 78 ALA A 83 -1 N GLY A 80 O ILE A 101 SHEET 3 C 6 ARG A 128 PHE A 138 -1 O GLN A 131 N ALA A 83 SHEET 4 C 6 ARG C 128 ARG C 136 -1 O ARG C 136 N ARG A 136 SHEET 5 C 6 CYS C 78 ALA C 83 -1 N ALA C 83 O GLN C 131 SHEET 6 C 6 VAL C 100 ILE C 101 -1 O ILE C 101 N GLY C 80 SHEET 1 D 2 TYR A 56 ILE A 58 0 SHEET 2 D 2 PHE A 121 VAL A 123 -1 O VAL A 123 N TYR A 56 SHEET 1 E 3 GLU A 62 LYS A 67 0 SHEET 2 E 3 GLY A 110 ASN A 115 -1 O VAL A 111 N VAL A 66 SHEET 3 E 3 ILE A 94 GLY A 97 -1 N ASP A 95 O PHE A 114 SHEET 1 F 3 ILE A 142 GLU A 144 0 SHEET 2 F 3 LEU C 26 ARG C 30 1 O LEU C 26 N GLU A 143 SHEET 3 F 3 ILE C 70 ALA C 73 -1 O ALA C 73 N ARG C 27 SHEET 1 G 3 ILE B 70 ALA B 73 0 SHEET 2 G 3 LEU B 26 ARG B 30 -1 N ARG B 27 O ALA B 73 SHEET 3 G 3 ILE C 142 GLU C 144 1 O GLU C 143 N LEU B 26 SHEET 1 H 4 GLY B 47 TYR B 51 0 SHEET 2 H 4 ARG B 128 ARG B 136 -1 O LEU B 132 N TYR B 48 SHEET 3 H 4 CYS B 78 ALA B 83 -1 N ALA B 83 O GLN B 131 SHEET 4 H 4 VAL B 100 ILE B 101 -1 O ILE B 101 N GLY B 80 SHEET 1 I 2 TYR B 56 ILE B 58 0 SHEET 2 I 2 PHE B 121 VAL B 123 -1 O VAL B 123 N TYR B 56 SHEET 1 J 3 GLU B 62 LYS B 67 0 SHEET 2 J 3 GLY B 110 ASN B 115 -1 O VAL B 111 N VAL B 66 SHEET 3 J 3 ILE B 94 GLY B 97 -1 N GLY B 97 O VAL B 112 SHEET 1 K 2 TYR C 56 ILE C 58 0 SHEET 2 K 2 PHE C 121 VAL C 123 -1 O VAL C 123 N TYR C 56 SHEET 1 L 3 GLU C 62 LYS C 67 0 SHEET 2 L 3 GLY C 110 ASN C 115 -1 O ASN C 115 N GLU C 62 SHEET 3 L 3 ILE C 94 GLY C 97 -1 N GLY C 97 O VAL C 112
LINK OE1 GLU B 135 MG MG A 168 1555 1555 2.27 LINK OE1 GLU C 135 MG MG A 168 1555 1555 2.27 LINK OE1 GLU A 135 MG MG A 168 1555 1555 2.28 LINK OD2 ASP B 95 MG MG A 166 1555 1555 2.70 LINK OD2 ASP A 95 MG MG A 166 1555 1555 2.87 LINK OD2 ASP C 95 MG MG A 166 1555 1555 2.93 LINK MG MG A 166 O HOH C 253 1555 1555 2.07 LINK MG MG A 166 O HOH A 250 1555 1555 2.07 LINK MG MG A 166 O HOH A 251 1555 1555 2.14 LINK MG MG A 166 O HOH B 255 1555 1555 2.15 LINK MG MG A 166 O HOH B 252 1555 1555 2.17 LINK MG MG A 168 O HOH B 413 1555 1555 2.07
SITE 1 AC1 14 ALA A 98 GLY A 99 VAL A 100 TYR A 105 SITE 2 AC1 14 VAL A 109 GLY A 110 VAL A 112 HOH A 171 SITE 3 AC1 14 HOH A 230 HOH A 259 SER C 86 GLY C 87 SITE 4 AC1 14 ALA C 90 LYS C 91 SITE 1 AC2 8 ASP A 95 HOH A 250 HOH A 251 ASP B 95 SITE 2 AC2 8 HOH B 252 HOH B 255 ASP C 95 HOH C 253 SITE 1 AC3 1 HIS A 92 SITE 1 AC4 4 GLU A 135 GLU B 135 HOH B 413 GLU C 135 SITE 1 AC5 14 SER A 86 GLY A 87 ALA A 90 LYS A 91 SITE 2 AC5 14 ALA B 98 GLY B 99 VAL B 100 TYR B 105 SITE 3 AC5 14 VAL B 109 GLY B 110 VAL B 112 HOH B 186 SITE 4 AC5 14 HOH B 193 HOH B 197 SITE 1 AC6 4 HIS A 34 HOH A 401 HIS B 34 HIS C 34 SITE 1 AC7 1 HIS B 92 SITE 1 AC8 15 SER B 86 GLY B 87 ALA B 90 LYS B 91 SITE 2 AC8 15 VAL C 65 ALA C 98 GLY C 99 VAL C 100 SITE 3 AC8 15 TYR C 105 VAL C 109 GLY C 110 VAL C 112 SITE 4 AC8 15 HOH C 171 HOH C 183 HOH C 340 SITE 1 AC9 1 HIS C 92
CRYST1 82.404 83.147 89.586 90.00 90.00 90.00 P 21 21 21 12
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 0.012135 0.000000 0.000000 0.00000
SCALE2 0.000000 0.012027 0.000000 0.00000
SCALE3 0.000000 0.000000 0.011163 0.00000