10 20 30 40 50 60 70 80 3ACX - Header ----|----|----|----|----|----|----|----|----|----|----|----|----|----|----|----| Asymmetric UnitHEADER TRANSFERASE/TRANSFERASE INHIBITOR 13-JAN-10 3ACX
TITLE CRYSTAL STRUCTURE OF THE C(30) CAROTENOID DEHYDROSQUALENE SYNTHASE TITLE 2 FROM STAPHYLOCOCCUS AUREUS COMPLEXED WITH BPH-673
COMPND MOL_ID: 1; COMPND 2 MOLECULE: DEHYDROSQUALENE SYNTHASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: DIAPOPHYTOENE SYNTHASE, 4,4'-DIAPOPHYTOENE SYNTHASE, DAP COMPND 5 SYNTHASE; COMPND 6 EC: 2.5.1.-; COMPND 7 ENGINEERED: YES
SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: STAPHYLOCOCCUS AUREUS; SOURCE 3 ORGANISM_TAXID: 1280; SOURCE 4 STRAIN: ATCC 27659; SOURCE 5 GENE: CRTM; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL-21 (DE3) PLYSS; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET-32 XA/LIC
KEYWDS CRTM, CAROTENOID BIOSYNTHESIS, STAPHYLOXANTHIN BIOSYNTHESIS, KEYWDS 2 TRANSFERASE, HEAD-TO-HEAD CONDENSATION, INHIBITOR, TRANSFERASE- KEYWDS 3 TRANSFERASE INHIBITOR COMPLEX
EXPDTA X-RAY DIFFRACTION
AUTHOR C.I.LIU,W.Y.JENG,A.H.J.WANG,E.OLDFIELD
REVDAT 2 30-OCT-13 3ACX 1 JRNL VERSN REVDAT 1 24-NOV-10 3ACX 0
JRNL AUTH F.Y.LIN,C.I.LIU,Y.L.LIU,Y.ZHANG,K.WANG,W.Y.JENG,T.P.KO, JRNL AUTH 2 R.CAO,A.H.J.WANG,E.OLDFIELD JRNL TITL MECHANISM OF ACTION AND INHIBITION OF DEHYDROSQUALENE JRNL TITL 2 SYNTHASE JRNL REF PROC.NATL.ACAD.SCI.USA V. 107 21337 2010 JRNL REFN ISSN 0027-8424 JRNL PMID 21098670 JRNL DOI 10.1073/PNAS.1010907107
REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH C.I.LIU,G.Y.LIU,Y.SONG,F.YIN,M.E.HENSLER,W.Y.JENG,V.NIZET, REMARK 1 AUTH 2 A.H.WANG,E.OLDFIELD REMARK 1 TITL A CHOLESTEROL BIOSYNTHESIS INHIBITOR BLOCKS STAPHYLOCOCCUS REMARK 1 TITL 2 AUREUS VIRULENCE. REMARK 1 REF SCIENCE V. 319 1391 2008 REMARK 1 REFN ISSN 0036-8075 REMARK 1 PMID 18276850 REMARK 1 DOI 10.1126/SCIENCE.1153018 REMARK 1 REFERENCE 2 REMARK 1 AUTH Y.SONG,C.I.LIU,F.Y.LIN,J.H.NO,M.HENSLER,Y.L.LIU,W.Y.JENG, REMARK 1 AUTH 2 J.LOW,G.Y.LIU,V.NIZET,A.H.WANG,E.OLDFIELD REMARK 1 TITL INHIBITION OF STAPHYLOXANTHIN VIRULENCE FACTOR BIOSYNTHESIS REMARK 1 TITL 2 IN STAPHYLOCOCCUS AUREUS: IN VITRO, IN VIVO, AND REMARK 1 TITL 3 CRYSTALLOGRAPHIC RESULTS. REMARK 1 REF J.MED.CHEM. V. 52 3869 2009 REMARK 1 REFN ISSN 0022-2623 REMARK 1 PMID 19456099 REMARK 1 DOI 10.1021/JM9001764
REMARK 2 REMARK 2 RESOLUTION. 1.31 ANGSTROMS.
REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0072 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.31 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 30.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 77731 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.161 REMARK 3 R VALUE (WORKING SET) : 0.160 REMARK 3 FREE R VALUE : 0.182 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 4103 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 10 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.31 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.38 REMARK 3 REFLECTION IN BIN (WORKING SET) : 11213 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.99 REMARK 3 BIN R VALUE (WORKING SET) : 0.1550 REMARK 3 BIN FREE R VALUE SET COUNT : 598 REMARK 3 BIN FREE R VALUE : 0.1940 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2392 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 23 REMARK 3 SOLVENT ATOMS : 453 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 12.61 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.14000 REMARK 3 B22 (A**2) : 0.14000 REMARK 3 B33 (A**2) : -0.21000 REMARK 3 B12 (A**2) : 0.07000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.050 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.047 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.024 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 1.231 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.967 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.962 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2472 ; 0.007 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3331 ; 1.417 ; 1.941 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 283 ; 4.895 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 138 ;31.711 ;24.275 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 443 ;12.641 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 14 ;13.541 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 348 ; 0.092 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1898 ; 0.008 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1415 ; 1.303 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2291 ; 2.125 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1057 ; 2.904 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1040 ; 4.291 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): 2472 ; 1.563 ; 3.000 REMARK 3 SPHERICITY; FREE ATOMS (A**2): 453 ; 5.363 ; 3.000 REMARK 3 SPHERICITY; BONDED ATOMS (A**2): 2415 ; 4.247 ; 3.000 REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1 A 284 REMARK 3 ORIGIN FOR THE GROUP (A): 55.5295 12.1679 52.0644 REMARK 3 T TENSOR REMARK 3 T11: 0.0001 T22: 0.0040 REMARK 3 T33: 0.0106 T12: 0.0003 REMARK 3 T13: 0.0007 T23: 0.0033 REMARK 3 L TENSOR REMARK 3 L11: 0.5112 L22: 0.4325 REMARK 3 L33: 0.6364 L12: -0.0399 REMARK 3 L13: 0.0967 L23: -0.0550 REMARK 3 S TENSOR REMARK 3 S11: -0.0029 S12: -0.0255 S13: 0.0081 REMARK 3 S21: -0.0054 S22: 0.0068 S23: -0.0361 REMARK 3 S31: -0.0040 S32: -0.0270 S33: -0.0038 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS
REMARK 4 REMARK 4 3ACX COMPLIES WITH FORMAT V. 3.30, 13-JUL-11
REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 29-JAN-10. REMARK 100 THE RCSB ID CODE IS RCSB029097.
REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 25-SEP-08 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSRRC REMARK 200 BEAMLINE : BL13C1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97315 REMARK 200 MONOCHROMATOR : HORIZONTALLY FOCUSING SINGLE REMARK 200 CRYSTAL SI(111) BENT MONOCHROMATOR REMARK 200 OPTICS : VERTICALLY FOCUSING MIRROR REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 210 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 81916 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.310 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 1.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 9.500 REMARK 200 R MERGE (I) : 0.03000 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 66.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.31 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.36 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 9.30 REMARK 200 R MERGE FOR SHELL (I) : 0.22200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 9.700 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: CNS REMARK 200 STARTING MODEL: 2ZCO REMARK 200 REMARK 200 REMARK: NULL
REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 49.59 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.44 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.12-0.58M POTASSIUM SODIUM TARTRATE, REMARK 280 PH 7.5, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 298K
REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 32 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+1/3 REMARK 290 6555 -X,-X+Y,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 60.30200 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 30.15100 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 30.15100 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 60.30200 REMARK 290 REMARK 290 REMARK: NULL
REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA.
REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000
REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ALA A -5 REMARK 465 ALA A -4 REMARK 465 ALA A -3 REMARK 465 ALA A -2 REMARK 465 ALA A -1 REMARK 465 ALA A 0 REMARK 465 HIS A 285 REMARK 465 ARG A 286 REMARK 465 ILE A 287
REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 ND2 ASN A 168 OH TYR A 248 1.97 REMARK 500 O HOH A 620 O HOH A 723 1.98 REMARK 500 OH TYR A 129 O HOH A 676 2.00 REMARK 500 CG MET A 88 O HOH A 753 2.07 REMARK 500 CE2 TYR A 77 O HOH A 723 2.15 REMARK 500 O HOH A 438 O HOH A 579 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 OE2 GLU A 162 O HOH A 736 2654 1.73 REMARK 500 CD GLU A 162 O HOH A 736 2654 1.94 REMARK 500 O HOH A 741 O HOH A 739 2654 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 158 NE - CZ - NH2 ANGL. DEV. = 4.6 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 82 -120.64 -108.51 REMARK 500 ALA A 134 -42.99 -140.42 REMARK 500 REMARK 500 REMARK: NULL
REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 421 DISTANCE = 6.29 ANGSTROMS REMARK 525 HOH A 545 DISTANCE = 6.35 ANGSTROMS REMARK 525 HOH A 659 DISTANCE = 5.95 ANGSTROMS
REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 673 A 1001
REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2ZCO RELATED DB: PDB REMARK 900 THE APO-ENZYME. REMARK 900 RELATED ID: 2ZCP RELATED DB: PDB REMARK 900 THE SAME PROTEIN COMPLEXED WITH FARNESYL THIOPYROPHOSPHATE. REMARK 900 RELATED ID: 2ZCQ RELATED DB: PDB REMARK 900 THE SAME PROTEIN COMPLEXED WITH BPH-652. REMARK 900 RELATED ID: 2ZCR RELATED DB: PDB REMARK 900 THE SAME PROTEIN COMPLEXED WITH BPH-698. REMARK 900 RELATED ID: 2ZCS RELATED DB: PDB REMARK 900 THE SAME PROTEIN COMPLEXED WITH BPH-700. REMARK 900 RELATED ID: 2ZY1 RELATED DB: PDB REMARK 900 THE SAME PROTEIN COMPLEXED WITH BPH-830. REMARK 900 RELATED ID: 3ACW RELATED DB: PDB REMARK 900 RELATED ID: 3ACY RELATED DB: PDB
DBREF 3ACX A 1 287 UNP A9JQL9 CRTM_STAAU 1 287
SEQADV 3ACX ALA A -5 UNP A9JQL9 EXPRESSION TAG SEQADV 3ACX ALA A -4 UNP A9JQL9 EXPRESSION TAG SEQADV 3ACX ALA A -3 UNP A9JQL9 EXPRESSION TAG SEQADV 3ACX ALA A -2 UNP A9JQL9 EXPRESSION TAG SEQADV 3ACX ALA A -1 UNP A9JQL9 EXPRESSION TAG SEQADV 3ACX ALA A 0 UNP A9JQL9 EXPRESSION TAG
SEQRES 1 A 293 ALA ALA ALA ALA ALA ALA MET THR MET MET ASP MET ASN SEQRES 2 A 293 PHE LYS TYR CYS HIS LYS ILE MET LYS LYS HIS SER LYS SEQRES 3 A 293 SER PHE SER TYR ALA PHE ASP LEU LEU PRO GLU ASP GLN SEQRES 4 A 293 ARG LYS ALA VAL TRP ALA ILE TYR ALA VAL CYS ARG LYS SEQRES 5 A 293 ILE ASP ASP SER ILE ASP VAL TYR GLY ASP ILE GLN PHE SEQRES 6 A 293 LEU ASN GLN ILE LYS GLU ASP ILE GLN SER ILE GLU LYS SEQRES 7 A 293 TYR PRO TYR GLU TYR HIS HIS PHE GLN SER ASP ARG ARG SEQRES 8 A 293 ILE MET MET ALA LEU GLN HIS VAL ALA GLN HIS LYS ASN SEQRES 9 A 293 ILE ALA PHE GLN SER PHE TYR ASN LEU ILE ASP THR VAL SEQRES 10 A 293 TYR LYS ASP GLN HIS PHE THR MET PHE GLU THR ASP ALA SEQRES 11 A 293 GLU LEU PHE GLY TYR CYS TYR GLY VAL ALA GLY THR VAL SEQRES 12 A 293 GLY GLU VAL LEU THR PRO ILE LEU SER ASP HIS GLU THR SEQRES 13 A 293 HIS GLN THR TYR ASP VAL ALA ARG ARG LEU GLY GLU SER SEQRES 14 A 293 LEU GLN LEU ILE ASN ILE LEU ARG ASP VAL GLY GLU ASP SEQRES 15 A 293 PHE GLU ASN GLU ARG ILE TYR PHE SER LYS GLN ARG LEU SEQRES 16 A 293 LYS GLN TYR GLU VAL ASP ILE ALA GLU VAL TYR GLN ASN SEQRES 17 A 293 GLY VAL ASN ASN HIS TYR ILE ASP LEU TRP GLU TYR TYR SEQRES 18 A 293 ALA ALA ILE ALA GLU LYS ASP PHE ARG ASP VAL MET ASP SEQRES 19 A 293 GLN ILE LYS VAL PHE SER ILE GLU ALA GLN PRO ILE ILE SEQRES 20 A 293 GLU LEU ALA ALA ARG ILE TYR ILE GLU ILE LEU ASP GLU SEQRES 21 A 293 VAL ARG GLN ALA ASN TYR THR LEU HIS GLU ARG VAL PHE SEQRES 22 A 293 VAL GLU LYS ARG LYS LYS ALA LYS LEU PHE HIS GLU ILE SEQRES 23 A 293 ASN SER LYS TYR HIS ARG ILE
HET 673 A1001 23
HETNAM 673 N-(1-METHYLETHYL)-3-[(3-PROP-2-EN-1-YLBIPHENYL-4-YL) HETNAM 2 673 OXY]PROPAN-1-AMINE
FORMUL 2 673 C21 H27 N O FORMUL 3 HOH *453(H2 O)
HELIX 1 1 THR A 2 SER A 19 1 18 HELIX 2 2 SER A 19 ASP A 27 1 9 HELIX 3 3 PRO A 30 SER A 50 1 21 HELIX 4 4 ILE A 51 TYR A 54 5 4 HELIX 5 5 ILE A 57 TYR A 73 1 17 HELIX 6 6 ASP A 83 LYS A 97 1 15 HELIX 7 7 ALA A 100 GLN A 115 1 16 HELIX 8 8 THR A 122 ALA A 134 1 13 HELIX 9 9 ALA A 134 SER A 146 1 13 HELIX 10 10 THR A 150 ASP A 172 1 23 HELIX 11 11 ASP A 172 ASN A 179 1 8 HELIX 12 12 SER A 185 GLU A 193 1 9 HELIX 13 13 ASP A 195 GLY A 203 1 9 HELIX 14 14 ASN A 205 GLN A 229 1 25 HELIX 15 15 ILE A 230 PHE A 233 5 4 HELIX 16 16 GLU A 236 ALA A 258 1 23 HELIX 17 17 GLU A 269 TYR A 284 1 16
SITE 1 AC1 13 HIS A 18 PHE A 22 PHE A 26 TYR A 41 SITE 2 AC1 13 ALA A 134 VAL A 137 GLY A 138 LEU A 141 SITE 3 AC1 13 LEU A 145 GLY A 161 HOH A 306 HOH A 447 SITE 4 AC1 13 HOH A 623
CRYST1 80.628 80.628 90.453 90.00 90.00 120.00 P 32 2 1 6
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 0.012403 0.007161 0.000000 0.00000
SCALE2 0.000000 0.014321 0.000000 0.00000
SCALE3 0.000000 0.000000 0.011055 0.00000