10 20 30 40 50 60 70 80 3A6O - Header ----|----|----|----|----|----|----|----|----|----|----|----|----|----|----|----| Asymmetric UnitHEADER HYDROLASE 07-SEP-09 3A6O
TITLE CRYSTAL STRUCTURE OF THERMOACTINOMYCES VULGARIS R-47 ALPHA- TITLE 2 AMYLASE 2/ACARBOSE COMPLEX
COMPND MOL_ID: 1; COMPND 2 MOLECULE: NEOPULLULANASE 2; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: ALPHA-AMYLASE II, TVA II; COMPND 5 EC: 3.2.1.135; COMPND 6 ENGINEERED: YES
SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: THERMOACTINOMYCES VULGARIS; SOURCE 3 ORGANISM_TAXID: 2026; SOURCE 4 STRAIN: R-47; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID
KEYWDS ACARBOSE, AMYLASE, COMPLEX, CALCIUM, CARBOHYDRATE KEYWDS 2 METABOLISM, GLYCOSIDASE, HYDROLASE, METAL-BINDING
EXPDTA X-RAY DIFFRACTION
AUTHOR A.OHTAKI,M.MIZUNO,T.TONOZUKA,Y.SAKANO,S.KAMITORI
REVDAT 1 22-SEP-09 3A6O 0
SPRSDE 22-SEP-09 3A6O 1VFK
JRNL AUTH A.OHTAKI,M.MIZUNO,T.TONOZUKA,Y.SAKANO,S.KAMITORI JRNL TITL COMPLEX STRUCTURES OF THERMOACTINOMYCES VULGARIS JRNL TITL 2 R-47 ALPHA-AMYLASE 2 WITH ACARBOSE AND JRNL TITL 3 CYCLODEXTRINS DEMONSTRATE THE MULTIPLE SUBSTRATE JRNL TITL 4 RECOGNITION MECHANISM JRNL REF J.BIOL.CHEM. V. 279 31033 2004 JRNL REFN ISSN 0021-9258 JRNL PMID 15138257 JRNL DOI 10.1074/JBC.M404311200
REMARK 1
REMARK 2 REMARK 2 RESOLUTION. 2.80 ANGSTROMS.
REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0005 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 38.81 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 35055 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.164 REMARK 3 R VALUE (WORKING SET) : 0.157 REMARK 3 FREE R VALUE : 0.231 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 9.000 REMARK 3 FREE R VALUE TEST SET COUNT : 3455 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.80 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.87 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2766 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.00 REMARK 3 BIN R VALUE (WORKING SET) : 0.2460 REMARK 3 BIN FREE R VALUE SET COUNT : 0 REMARK 3 BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 9550 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 112 REMARK 3 SOLVENT ATOMS : 406 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 70.60 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 25.80 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.83000 REMARK 3 B22 (A**2) : -0.90000 REMARK 3 B33 (A**2) : -0.93000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.358 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.249 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 12.751 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.949 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.887 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 9928 ; 0.029 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 13458 ; 2.493 ; 1.960 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 1168 ; 7.139 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 526 ;35.741 ;23.042 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1608 ;19.890 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 90 ;21.544 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 1414 ; 0.153 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 7722 ; 0.010 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 5211 ; 0.266 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 6644 ; 0.338 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 644 ; 0.198 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): 7 ; 0.146 ; 0.200 REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 40 ; 0.276 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 9 ; 0.303 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 5982 ; 1.298 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 9320 ; 2.198 ; 2.000 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 4576 ; 3.304 ; 3.000 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 4138 ; 5.111 ; 4.500 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE REMARK 3 RIDING POSITIONS
REMARK 4 REMARK 4 3A6O COMPLIES WITH FORMAT V. 3.20, 01-DEC-08
REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 09-SEP-09. REMARK 100 THE RCSB ID CODE IS RCSB028878.
REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PHOTON FACTORY REMARK 200 BEAMLINE : BL-6A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : NULL REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 4 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : PROCESS REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 35055 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.800 REMARK 200 RESOLUTION RANGE LOW (A) : 38.810 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : NULL REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : 0.08400 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: CNS REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL
REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 56.96 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.86 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: VAPOR DIFFUSION, HANGING DROP
REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 57.29950 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 56.50350 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 59.62900 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 56.50350 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 57.29950 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 59.62900 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL
REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA.
REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000
REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 723 O HOH B 738 1.88 REMARK 500 OD2 ASP A 309 NH1 ARG A 312 2.08 REMARK 500 OH TYR B 41 O HOH B 782 2.15 REMARK 500 O HOH B 664 O HOH B 735 2.17 REMARK 500 O ALA A 15 O HOH A 656 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 OD1 ASP A 149 O HOH B 765 2565 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU A 4 CB GLU A 4 CG -0.175 REMARK 500 TYR A 68 CD1 TYR A 68 CE1 -0.093 REMARK 500 PHE A 141 CZ PHE A 141 CE2 0.119 REMARK 500 GLU A 305 CG GLU A 305 CD 0.116 REMARK 500 GLU A 305 CD GLU A 305 OE1 0.085 REMARK 500 ARG A 340 CG ARG A 340 CD 0.262 REMARK 500 GLU A 388 CD GLU A 388 OE1 0.072 REMARK 500 GLU A 392 CD GLU A 392 OE1 0.070 REMARK 500 GLU B 38 CG GLU B 38 CD 0.094 REMARK 500 GLU B 38 CD GLU B 38 OE2 0.085 REMARK 500 GLU B 64 CG GLU B 64 CD 0.110 REMARK 500 GLU B 305 CG GLU B 305 CD 0.141 REMARK 500 TRP B 335 CZ3 TRP B 335 CH2 0.110 REMARK 500 PHE B 368 CZ PHE B 368 CE2 0.116 REMARK 500 GLU B 388 CD GLU B 388 OE2 0.074 REMARK 500 GLU B 407 CB GLU B 407 CG -0.124 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 26 NE - CZ - NH2 ANGL. DEV. = -4.6 DEGREES REMARK 500 ARG A 28 NE - CZ - NH1 ANGL. DEV. = 3.2 DEGREES REMARK 500 LEU A 52 CA - CB - CG ANGL. DEV. = -15.3 DEGREES REMARK 500 ARG A 79 NE - CZ - NH1 ANGL. DEV. = 4.2 DEGREES REMARK 500 ARG A 79 NE - CZ - NH2 ANGL. DEV. = -3.2 DEGREES REMARK 500 ARG A 105 NE - CZ - NH1 ANGL. DEV. = -3.2 DEGREES REMARK 500 THR A 123 OG1 - CB - CG2 ANGL. DEV. = -14.4 DEGREES REMARK 500 ARG A 140 NE - CZ - NH1 ANGL. DEV. = -6.5 DEGREES REMARK 500 ASP A 208 CB - CG - OD1 ANGL. DEV. = 8.4 DEGREES REMARK 500 ARG A 224 NE - CZ - NH2 ANGL. DEV. = 4.2 DEGREES REMARK 500 ARG A 231 NE - CZ - NH2 ANGL. DEV. = -3.0 DEGREES REMARK 500 ARG A 232 NE - CZ - NH1 ANGL. DEV. = -5.5 DEGREES REMARK 500 ARG A 232 NE - CZ - NH2 ANGL. DEV. = 5.8 DEGREES REMARK 500 ARG A 253 NE - CZ - NH1 ANGL. DEV. = 3.7 DEGREES REMARK 500 ARG A 253 NE - CZ - NH2 ANGL. DEV. = -3.9 DEGREES REMARK 500 ILE A 270 CG1 - CB - CG2 ANGL. DEV. = -15.7 DEGREES REMARK 500 ARG A 323 CG - CD - NE ANGL. DEV. = 17.4 DEGREES REMARK 500 ARG A 323 NE - CZ - NH2 ANGL. DEV. = 4.8 DEGREES REMARK 500 ARG A 340 NE - CZ - NH2 ANGL. DEV. = 3.6 DEGREES REMARK 500 MET A 364 CG - SD - CE ANGL. DEV. = 11.6 DEGREES REMARK 500 ASP A 465 CB - CG - OD1 ANGL. DEV. = -7.2 DEGREES REMARK 500 ASP A 465 CB - CG - OD2 ANGL. DEV. = 6.0 DEGREES REMARK 500 ARG A 469 NE - CZ - NH1 ANGL. DEV. = 4.7 DEGREES REMARK 500 ARG A 535 NE - CZ - NH2 ANGL. DEV. = 3.5 DEGREES REMARK 500 ARG B 24 NE - CZ - NH1 ANGL. DEV. = 5.0 DEGREES REMARK 500 ARG B 79 NE - CZ - NH2 ANGL. DEV. = -3.6 DEGREES REMARK 500 ARG B 140 NE - CZ - NH1 ANGL. DEV. = -3.4 DEGREES REMARK 500 ASP B 145 CB - CG - OD1 ANGL. DEV. = 5.4 DEGREES REMARK 500 PRO B 194 C - N - CA ANGL. DEV. = -9.2 DEGREES REMARK 500 ASP B 208 CB - CG - OD2 ANGL. DEV. = 5.8 DEGREES REMARK 500 ARG B 232 NE - CZ - NH1 ANGL. DEV. = 3.1 DEGREES REMARK 500 ASP B 239 CB - CG - OD1 ANGL. DEV. = 6.6 DEGREES REMARK 500 ARG B 323 NE - CZ - NH1 ANGL. DEV. = -3.5 DEGREES REMARK 500 ARG B 336 NE - CZ - NH1 ANGL. DEV. = -5.1 DEGREES REMARK 500 ARG B 382 NE - CZ - NH2 ANGL. DEV. = 4.9 DEGREES REMARK 500 ARG B 400 NE - CZ - NH1 ANGL. DEV. = -3.4 DEGREES REMARK 500 ARG B 437 NE - CZ - NH1 ANGL. DEV. = -3.5 DEGREES REMARK 500 ARG B 481 NE - CZ - NH2 ANGL. DEV. = -4.1 DEGREES REMARK 500 VAL B 505 CB - CA - C ANGL. DEV. = -13.2 DEGREES REMARK 500 ARG B 506 NE - CZ - NH1 ANGL. DEV. = -3.3 DEGREES REMARK 500 ARG B 535 NE - CZ - NH2 ANGL. DEV. = -4.0 DEGREES REMARK 500 LEU B 573 CA - CB - CG ANGL. DEV. = 14.7 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 11 -177.83 -171.00 REMARK 500 SER A 19 -154.83 -144.10 REMARK 500 LYS A 30 132.52 -39.30 REMARK 500 ASP A 63 -147.41 -110.87 REMARK 500 SER A 102 149.42 -177.73 REMARK 500 ARG A 105 -75.20 -27.07 REMARK 500 SER A 106 -49.47 -26.39 REMARK 500 LYS A 158 -5.70 -37.79 REMARK 500 ASP A 159 44.69 177.70 REMARK 500 THR A 193 168.00 -44.05 REMARK 500 ASP A 247 -2.62 -58.74 REMARK 500 PHE A 269 76.47 -116.29 REMARK 500 SER A 276 -22.78 176.19 REMARK 500 LYS A 277 113.85 -32.52 REMARK 500 THR A 278 -91.61 -57.16 REMARK 500 ALA A 287 -133.51 52.82 REMARK 500 ILE A 319 176.34 -58.60 REMARK 500 VAL A 326 50.44 37.03 REMARK 500 GLN A 367 -103.01 -139.42 REMARK 500 ALA A 385 -72.31 -90.34 REMARK 500 ALA A 463 -174.13 -66.77 REMARK 500 ASP A 465 122.38 -31.19 REMARK 500 ARG A 469 47.22 -108.20 REMARK 500 GLN A 524 -129.44 57.79 REMARK 500 GLU A 537 -169.69 -100.92 REMARK 500 LYS A 551 -11.07 -140.49 REMARK 500 GLN A 566 51.60 75.31 REMARK 500 TYR A 576 16.93 54.67 REMARK 500 ASN A 583 23.24 -77.40 REMARK 500 LEU B 2 98.37 -67.47 REMARK 500 ALA B 15 119.71 -161.30 REMARK 500 SER B 19 -165.39 -163.47 REMARK 500 ASP B 63 -153.32 -108.04 REMARK 500 GLN B 90 44.16 -106.50 REMARK 500 VAL B 110 115.12 -168.65 REMARK 500 GLU B 130 33.13 -146.55 REMARK 500 GLU B 139 -18.04 -45.19 REMARK 500 THR B 153 108.42 -44.46 REMARK 500 HIS B 164 -19.63 -47.11 REMARK 500 THR B 193 -171.02 -64.56 REMARK 500 ALA B 197 119.83 -38.36 REMARK 500 VAL B 241 73.48 -101.40 REMARK 500 PHE B 249 121.78 -32.77 REMARK 500 LYS B 265 -37.34 -36.31 REMARK 500 GLU B 271 -79.54 -75.83 REMARK 500 VAL B 275 -91.82 -13.39 REMARK 500 SER B 276 113.12 -164.80 REMARK 500 LYS B 277 82.28 -44.29 REMARK 500 THR B 278 -47.24 -11.92 REMARK 500 SER B 279 -88.15 -4.45 REMARK 500 ARG B 280 -83.67 -86.11 REMARK 500 THR B 281 107.25 130.65 REMARK 500 ASN B 282 56.23 -109.08 REMARK 500 ALA B 287 -145.86 42.05 REMARK 500 MET B 293 66.51 -119.37 REMARK 500 ASN B 346 96.89 -161.55 REMARK 500 HIS B 357 -166.46 -79.19 REMARK 500 GLN B 367 -93.29 -125.23 REMARK 500 ALA B 385 -88.61 -96.72 REMARK 500 ASP B 418 -178.89 -176.51 REMARK 500 GLN B 513 -77.94 -70.61 REMARK 500 GLN B 524 -139.55 70.65 REMARK 500 VAL B 545 89.14 -151.58 REMARK 500 TYR B 576 26.75 48.54 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CHIRAL CENTERS REMARK 500 REMARK 500 UNEXPECTED CONFIGURATION OF THE FOLLOWING CHIRAL REMARK 500 CENTER(S) USING IMPROPER CA--C--CB--N CHIRALITY REMARK 500 M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (11X,I3,1X,A3,1X,A1,I4,A1,6X,F5.1,6X,A1,10X,A1,3X,A16) REMARK 500 REMARK 500 M RES CSSEQI IMPROPER EXPECTED FOUND DETAILS REMARK 500 ARG A 140 22.1 L L OUTSIDE RANGE REMARK 500 LYS A 565 24.9 L L OUTSIDE RANGE REMARK 500 REMARK 500 REMARK: NULL
REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH B 646 DISTANCE = 5.72 ANGSTROMS
REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 586 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASN A 143 OD1 REMARK 620 2 ASP A 145 O 73.2 REMARK 620 3 ASN A 148 OD1 134.4 61.4 REMARK 620 4 ASP A 149 OD2 79.1 79.9 96.6 REMARK 620 5 GLY A 169 O 79.3 148.6 141.7 109.7 REMARK 620 6 ASP A 171 OD2 81.6 73.0 81.2 150.3 88.4 REMARK 620 7 HOH A 606 O 163.4 123.0 61.6 106.1 84.1 98.8 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B 586 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASN B 143 OD1 REMARK 620 2 ASP B 145 O 85.9 REMARK 620 3 ASN B 148 OD1 154.1 68.9 REMARK 620 4 ASP B 149 OD1 85.2 83.0 85.7 REMARK 620 5 GLY B 169 O 60.2 146.1 144.2 91.3 REMARK 620 6 ASP B 171 OD1 67.8 95.1 118.8 153.0 75.3 REMARK 620 7 HOH B 603 O 133.0 137.3 69.7 83.8 74.5 113.9 REMARK 620 N 1 2 3 4 5 6
REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 586 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ARE A 701 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA B 586 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ARE B 702
DBREF 3A6O A 1 585 UNP Q08751 NEPU2_THEVU 1 585 DBREF 3A6O B 1 585 UNP Q08751 NEPU2_THEVU 1 585
SEQRES 1 A 585 MET LEU LEU GLU ALA ILE PHE HIS GLU ALA LYS GLY SER SEQRES 2 A 585 TYR ALA TYR PRO ILE SER GLU THR GLN LEU ARG VAL ARG SEQRES 3 A 585 LEU ARG ALA LYS LYS GLY ASP VAL VAL ARG CYS GLU VAL SEQRES 4 A 585 LEU TYR ALA ASP ARG TYR ALA SER PRO GLU GLU GLU LEU SEQRES 5 A 585 ALA HIS ALA LEU ALA GLY LYS ALA GLY SER ASP GLU ARG SEQRES 6 A 585 PHE ASP TYR PHE GLU ALA LEU LEU GLU CYS SER THR LYS SEQRES 7 A 585 ARG VAL LYS TYR VAL PHE LEU LEU THR GLY PRO GLN GLY SEQRES 8 A 585 GLU ALA VAL TYR PHE GLY GLU THR GLY PHE SER ALA GLU SEQRES 9 A 585 ARG SER LYS ALA GLY VAL PHE GLN TYR ALA TYR ILE HIS SEQRES 10 A 585 ARG SER GLU VAL PHE THR THR PRO GLU TRP ALA LYS GLU SEQRES 11 A 585 ALA VAL ILE TYR GLN ILE PHE PRO GLU ARG PHE ALA ASN SEQRES 12 A 585 GLY ASP PRO SER ASN ASP PRO PRO GLY THR GLU GLN TRP SEQRES 13 A 585 ALA LYS ASP ALA ARG PRO ARG HIS ASP SER PHE TYR GLY SEQRES 14 A 585 GLY ASP LEU LYS GLY VAL ILE ASP ARG LEU PRO TYR LEU SEQRES 15 A 585 GLU GLU LEU GLY VAL THR ALA LEU TYR PHE THR PRO ILE SEQRES 16 A 585 PHE ALA SER PRO SER HIS HIS LYS TYR ASP THR ALA ASP SEQRES 17 A 585 TYR LEU ALA ILE ASP PRO GLN PHE GLY ASP LEU PRO THR SEQRES 18 A 585 PHE ARG ARG LEU VAL ASP GLU ALA HIS ARG ARG GLY ILE SEQRES 19 A 585 LYS ILE ILE LEU ASP ALA VAL PHE ASN HIS ALA GLY ASP SEQRES 20 A 585 GLN PHE PHE ALA PHE ARG ASP VAL LEU GLN LYS GLY GLU SEQRES 21 A 585 GLN SER ARG TYR LYS ASP TRP PHE PHE ILE GLU ASP PHE SEQRES 22 A 585 PRO VAL SER LYS THR SER ARG THR ASN TYR GLU THR PHE SEQRES 23 A 585 ALA VAL GLN VAL PRO ALA MET PRO LYS LEU ARG THR GLU SEQRES 24 A 585 ASN PRO GLU VAL LYS GLU TYR LEU PHE ASP VAL ALA ARG SEQRES 25 A 585 PHE TRP MET GLU GLN GLY ILE ASP GLY TRP ARG LEU ASP SEQRES 26 A 585 VAL ALA ASN GLU VAL ASP HIS ALA PHE TRP ARG GLU PHE SEQRES 27 A 585 ARG ARG LEU VAL LYS SER LEU ASN PRO ASP ALA LEU ILE SEQRES 28 A 585 VAL GLY GLU ILE TRP HIS ASP ALA SER GLY TRP LEU MET SEQRES 29 A 585 GLY ASP GLN PHE ASP SER VAL MET ASN TYR LEU PHE ARG SEQRES 30 A 585 GLU SER VAL ILE ARG PHE PHE ALA THR GLY GLU ILE HIS SEQRES 31 A 585 ALA GLU ARG PHE ASP ALA GLU LEU THR ARG ALA ARG MET SEQRES 32 A 585 LEU TYR PRO GLU GLN ALA ALA GLN GLY LEU TRP ASN LEU SEQRES 33 A 585 LEU ASP SER HIS ASP THR GLU ARG PHE LEU THR SER CYS SEQRES 34 A 585 GLY GLY ASN GLU ALA LYS PHE ARG LEU ALA VAL LEU PHE SEQRES 35 A 585 GLN MET THR TYR LEU GLY THR PRO LEU ILE TYR TYR GLY SEQRES 36 A 585 ASP GLU ILE GLY MET ALA GLY ALA THR ASP PRO ASP CYS SEQRES 37 A 585 ARG ARG PRO MET ILE TRP GLU GLU LYS GLU GLN ASN ARG SEQRES 38 A 585 GLY LEU PHE GLU PHE TYR LYS GLU LEU ILE ARG LEU ARG SEQRES 39 A 585 HIS ARG LEU ALA SER LEU THR ARG GLY ASN VAL ARG SER SEQRES 40 A 585 TRP HIS ALA ASP LYS GLN ALA ASN LEU TYR ALA PHE VAL SEQRES 41 A 585 ARG THR VAL GLN ASP GLN HIS VAL GLY VAL VAL LEU ASN SEQRES 42 A 585 ASN ARG GLY GLU LYS GLN THR VAL LEU LEU GLN VAL PRO SEQRES 43 A 585 GLU SER GLY GLY LYS THR TRP LEU ASP CYS LEU THR GLY SEQRES 44 A 585 GLU GLU VAL HIS GLY LYS GLN GLY GLN LEU LYS LEU THR SEQRES 45 A 585 LEU ARG PRO TYR GLN GLY MET ILE LEU TRP ASN GLY ARG SEQRES 1 B 585 MET LEU LEU GLU ALA ILE PHE HIS GLU ALA LYS GLY SER SEQRES 2 B 585 TYR ALA TYR PRO ILE SER GLU THR GLN LEU ARG VAL ARG SEQRES 3 B 585 LEU ARG ALA LYS LYS GLY ASP VAL VAL ARG CYS GLU VAL SEQRES 4 B 585 LEU TYR ALA ASP ARG TYR ALA SER PRO GLU GLU GLU LEU SEQRES 5 B 585 ALA HIS ALA LEU ALA GLY LYS ALA GLY SER ASP GLU ARG SEQRES 6 B 585 PHE ASP TYR PHE GLU ALA LEU LEU GLU CYS SER THR LYS SEQRES 7 B 585 ARG VAL LYS TYR VAL PHE LEU LEU THR GLY PRO GLN GLY SEQRES 8 B 585 GLU ALA VAL TYR PHE GLY GLU THR GLY PHE SER ALA GLU SEQRES 9 B 585 ARG SER LYS ALA GLY VAL PHE GLN TYR ALA TYR ILE HIS SEQRES 10 B 585 ARG SER GLU VAL PHE THR THR PRO GLU TRP ALA LYS GLU SEQRES 11 B 585 ALA VAL ILE TYR GLN ILE PHE PRO GLU ARG PHE ALA ASN SEQRES 12 B 585 GLY ASP PRO SER ASN ASP PRO PRO GLY THR GLU GLN TRP SEQRES 13 B 585 ALA LYS ASP ALA ARG PRO ARG HIS ASP SER PHE TYR GLY SEQRES 14 B 585 GLY ASP LEU LYS GLY VAL ILE ASP ARG LEU PRO TYR LEU SEQRES 15 B 585 GLU GLU LEU GLY VAL THR ALA LEU TYR PHE THR PRO ILE SEQRES 16 B 585 PHE ALA SER PRO SER HIS HIS LYS TYR ASP THR ALA ASP SEQRES 17 B 585 TYR LEU ALA ILE ASP PRO GLN PHE GLY ASP LEU PRO THR SEQRES 18 B 585 PHE ARG ARG LEU VAL ASP GLU ALA HIS ARG ARG GLY ILE SEQRES 19 B 585 LYS ILE ILE LEU ASP ALA VAL PHE ASN HIS ALA GLY ASP SEQRES 20 B 585 GLN PHE PHE ALA PHE ARG ASP VAL LEU GLN LYS GLY GLU SEQRES 21 B 585 GLN SER ARG TYR LYS ASP TRP PHE PHE ILE GLU ASP PHE SEQRES 22 B 585 PRO VAL SER LYS THR SER ARG THR ASN TYR GLU THR PHE SEQRES 23 B 585 ALA VAL GLN VAL PRO ALA MET PRO LYS LEU ARG THR GLU SEQRES 24 B 585 ASN PRO GLU VAL LYS GLU TYR LEU PHE ASP VAL ALA ARG SEQRES 25 B 585 PHE TRP MET GLU GLN GLY ILE ASP GLY TRP ARG LEU ASP SEQRES 26 B 585 VAL ALA ASN GLU VAL ASP HIS ALA PHE TRP ARG GLU PHE SEQRES 27 B 585 ARG ARG LEU VAL LYS SER LEU ASN PRO ASP ALA LEU ILE SEQRES 28 B 585 VAL GLY GLU ILE TRP HIS ASP ALA SER GLY TRP LEU MET SEQRES 29 B 585 GLY ASP GLN PHE ASP SER VAL MET ASN TYR LEU PHE ARG SEQRES 30 B 585 GLU SER VAL ILE ARG PHE PHE ALA THR GLY GLU ILE HIS SEQRES 31 B 585 ALA GLU ARG PHE ASP ALA GLU LEU THR ARG ALA ARG MET SEQRES 32 B 585 LEU TYR PRO GLU GLN ALA ALA GLN GLY LEU TRP ASN LEU SEQRES 33 B 585 LEU ASP SER HIS ASP THR GLU ARG PHE LEU THR SER CYS SEQRES 34 B 585 GLY GLY ASN GLU ALA LYS PHE ARG LEU ALA VAL LEU PHE SEQRES 35 B 585 GLN MET THR TYR LEU GLY THR PRO LEU ILE TYR TYR GLY SEQRES 36 B 585 ASP GLU ILE GLY MET ALA GLY ALA THR ASP PRO ASP CYS SEQRES 37 B 585 ARG ARG PRO MET ILE TRP GLU GLU LYS GLU GLN ASN ARG SEQRES 38 B 585 GLY LEU PHE GLU PHE TYR LYS GLU LEU ILE ARG LEU ARG SEQRES 39 B 585 HIS ARG LEU ALA SER LEU THR ARG GLY ASN VAL ARG SER SEQRES 40 B 585 TRP HIS ALA ASP LYS GLN ALA ASN LEU TYR ALA PHE VAL SEQRES 41 B 585 ARG THR VAL GLN ASP GLN HIS VAL GLY VAL VAL LEU ASN SEQRES 42 B 585 ASN ARG GLY GLU LYS GLN THR VAL LEU LEU GLN VAL PRO SEQRES 43 B 585 GLU SER GLY GLY LYS THR TRP LEU ASP CYS LEU THR GLY SEQRES 44 B 585 GLU GLU VAL HIS GLY LYS GLN GLY GLN LEU LYS LEU THR SEQRES 45 B 585 LEU ARG PRO TYR GLN GLY MET ILE LEU TRP ASN GLY ARG
HET CA A 586 1 HET ARE A 701 55 HET CA B 586 1 HET ARE B 702 55
HETNAM CA CALCIUM ION HETNAM ARE ACARBOSE DERIVED PENTASACCHARIDE
HETSYN ARE 4-O-(4,6-DIDEOXY-4-{[4-[(4-O- HETSYN 2 ARE HEXOPYRANOSYLHEXOPYRANOSYL)OXY]-5,6-DIHYDROXY-3- HETSYN 3 ARE (HYDROXYMETHYL)CYCLOHEX-2-EN-1- HETSYN 4 ARE YL]AMINO}HEXOPYRANOSYL)HEXOPYRANOSE
FORMUL 3 CA 2(CA 2+) FORMUL 4 ARE 2(C31 H53 N O23) FORMUL 7 HOH *406(H2 O)
HELIX 1 1 LEU A 2 ILE A 6 5 5 HELIX 2 2 GLU A 104 GLY A 109 1 6 HELIX 3 3 HIS A 117 VAL A 121 5 5 HELIX 4 4 PRO A 125 GLU A 130 1 6 HELIX 5 5 PHE A 137 PHE A 141 5 5 HELIX 6 6 ASP A 145 ASP A 149 5 5 HELIX 7 7 ASP A 171 GLY A 186 1 16 HELIX 8 8 ASP A 218 ARG A 231 1 14 HELIX 9 9 PHE A 249 GLY A 259 1 11 HELIX 10 10 GLU A 260 SER A 262 5 3 HELIX 11 11 TYR A 264 PHE A 268 5 5 HELIX 12 12 ASN A 300 GLU A 316 1 17 HELIX 13 13 VAL A 326 VAL A 330 5 5 HELIX 14 14 ASP A 331 ASN A 346 1 16 HELIX 15 15 ALA A 359 LEU A 363 5 5 HELIX 16 16 ASN A 373 ALA A 385 1 13 HELIX 17 17 HIS A 390 MET A 403 1 14 HELIX 18 18 PRO A 406 GLY A 412 1 7 HELIX 19 19 ARG A 424 CYS A 429 1 6 HELIX 20 20 ASN A 432 TYR A 446 1 15 HELIX 21 21 GLY A 455 GLY A 459 5 5 HELIX 22 22 PRO A 466 ARG A 470 5 5 HELIX 23 23 GLU A 475 GLN A 479 5 5 HELIX 24 24 ASN A 480 LEU A 497 1 18 HELIX 25 25 LEU A 497 GLY A 503 1 7 HELIX 26 26 PRO A 546 GLY A 550 5 5 HELIX 27 27 LEU B 2 ILE B 6 5 5 HELIX 28 28 GLU B 104 GLY B 109 1 6 HELIX 29 29 HIS B 117 VAL B 121 5 5 HELIX 30 30 GLU B 126 ALA B 131 5 6 HELIX 31 31 PHE B 137 PHE B 141 5 5 HELIX 32 32 ASP B 145 ASP B 149 5 5 HELIX 33 33 ASP B 171 GLY B 186 1 16 HELIX 34 34 ASP B 218 ARG B 232 1 15 HELIX 35 35 PHE B 249 GLY B 259 1 11 HELIX 36 36 GLU B 260 SER B 262 5 3 HELIX 37 37 TYR B 264 PHE B 268 5 5 HELIX 38 38 ASN B 300 GLU B 316 1 17 HELIX 39 39 VAL B 326 VAL B 330 5 5 HELIX 40 40 ASP B 331 ASN B 346 1 16 HELIX 41 41 ALA B 359 LEU B 363 5 5 HELIX 42 42 ASN B 373 ALA B 385 1 13 HELIX 43 43 HIS B 390 MET B 403 1 14 HELIX 44 44 PRO B 406 GLN B 411 1 6 HELIX 45 45 ARG B 424 CYS B 429 1 6 HELIX 46 46 ASN B 432 TYR B 446 1 15 HELIX 47 47 GLY B 455 GLY B 459 5 5 HELIX 48 48 PRO B 466 ARG B 470 5 5 HELIX 49 49 GLU B 475 GLN B 479 5 5 HELIX 50 50 ASN B 480 LEU B 497 1 18 HELIX 51 51 LEU B 497 GLY B 503 1 7
SHEET 1 A 4 ALA A 15 PRO A 17 0 SHEET 2 A 4 GLN A 22 LYS A 30 -1 O ARG A 24 N TYR A 16 SHEET 3 A 4 PHE A 66 GLU A 74 -1 O LEU A 73 N LEU A 23 SHEET 4 A 4 GLY A 58 SER A 62 -1 N GLY A 58 O GLU A 70 SHEET 1 B 5 ALA A 53 LEU A 56 0 SHEET 2 B 5 ARG A 36 ASP A 43 -1 N TYR A 41 O ALA A 53 SHEET 3 B 5 VAL A 80 THR A 87 -1 O LEU A 85 N GLU A 38 SHEET 4 B 5 ALA A 93 GLY A 97 -1 O VAL A 94 N LEU A 86 SHEET 5 B 5 GLY A 100 SER A 102 -1 O GLY A 100 N GLY A 97 SHEET 1 C 4 ALA A 53 LEU A 56 0 SHEET 2 C 4 ARG A 36 ASP A 43 -1 N TYR A 41 O ALA A 53 SHEET 3 C 4 VAL A 80 THR A 87 -1 O LEU A 85 N GLU A 38 SHEET 4 C 4 PHE A 111 TYR A 113 -1 O PHE A 111 N TYR A 82 SHEET 1 D 8 SER A 370 VAL A 371 0 SHEET 2 D 8 LEU A 350 GLY A 353 1 N GLY A 353 O SER A 370 SHEET 3 D 8 GLY A 321 LEU A 324 1 N LEU A 324 O VAL A 352 SHEET 4 D 8 LYS A 235 ALA A 240 1 N ALA A 240 O ARG A 323 SHEET 5 D 8 ALA A 189 PHE A 192 1 N LEU A 190 O ILE A 237 SHEET 6 D 8 ILE A 133 ILE A 136 1 N TYR A 134 O TYR A 191 SHEET 7 D 8 THR A 449 TYR A 453 1 O ILE A 452 N GLN A 135 SHEET 8 D 8 TRP A 414 LEU A 416 1 N ASN A 415 O THR A 449 SHEET 1 E 2 PHE A 196 ALA A 197 0 SHEET 2 E 2 ASP A 208 ILE A 212 -1 O ALA A 211 N ALA A 197 SHEET 1 F 6 ASN A 504 ASP A 511 0 SHEET 2 F 6 LEU A 516 VAL A 523 -1 O VAL A 520 N ARG A 506 SHEET 3 F 6 GLN A 526 ASN A 533 -1 O LEU A 532 N TYR A 517 SHEET 4 F 6 GLY A 578 TRP A 582 -1 O MET A 579 N VAL A 531 SHEET 5 F 6 THR A 552 ASP A 555 -1 N LEU A 554 O TRP A 582 SHEET 6 F 6 GLU A 561 HIS A 563 -1 O VAL A 562 N TRP A 553 SHEET 1 G 2 GLN A 539 GLN A 544 0 SHEET 2 G 2 GLN A 568 LEU A 573 -1 O LEU A 569 N LEU A 543 SHEET 1 H 4 ALA B 15 SER B 19 0 SHEET 2 H 4 GLN B 22 LYS B 30 -1 O ARG B 24 N TYR B 16 SHEET 3 H 4 PHE B 66 GLU B 74 -1 O PHE B 69 N LEU B 27 SHEET 4 H 4 GLY B 58 SER B 62 -1 N ALA B 60 O TYR B 68 SHEET 1 I 5 ALA B 53 LEU B 56 0 SHEET 2 I 5 ARG B 36 ALA B 42 -1 N VAL B 39 O ALA B 55 SHEET 3 I 5 VAL B 80 THR B 87 -1 O THR B 87 N ARG B 36 SHEET 4 I 5 ALA B 93 GLY B 97 -1 O VAL B 94 N LEU B 86 SHEET 5 I 5 GLY B 100 SER B 102 -1 O SER B 102 N TYR B 95 SHEET 1 J 4 ALA B 53 LEU B 56 0 SHEET 2 J 4 ARG B 36 ALA B 42 -1 N VAL B 39 O ALA B 55 SHEET 3 J 4 VAL B 80 THR B 87 -1 O THR B 87 N ARG B 36 SHEET 4 J 4 PHE B 111 TYR B 113 -1 O TYR B 113 N VAL B 80 SHEET 1 K 8 SER B 370 VAL B 371 0 SHEET 2 K 8 LEU B 350 GLY B 353 1 N GLY B 353 O SER B 370 SHEET 3 K 8 GLY B 321 LEU B 324 1 N TRP B 322 O LEU B 350 SHEET 4 K 8 LYS B 235 ALA B 240 1 N ALA B 240 O ARG B 323 SHEET 5 K 8 ALA B 189 PHE B 192 1 N LEU B 190 O LYS B 235 SHEET 6 K 8 ILE B 133 ILE B 136 1 N TYR B 134 O TYR B 191 SHEET 7 K 8 THR B 449 TYR B 453 1 O ILE B 452 N GLN B 135 SHEET 8 K 8 TRP B 414 LEU B 416 1 N ASN B 415 O THR B 449 SHEET 1 L 2 PHE B 196 ALA B 197 0 SHEET 2 L 2 ASP B 208 ILE B 212 -1 O ALA B 211 N ALA B 197 SHEET 1 M 6 ASN B 504 ASP B 511 0 SHEET 2 M 6 LEU B 516 VAL B 523 -1 O ALA B 518 N HIS B 509 SHEET 3 M 6 GLN B 526 ASN B 533 -1 O VAL B 530 N PHE B 519 SHEET 4 M 6 GLY B 578 TRP B 582 -1 O LEU B 581 N GLY B 529 SHEET 5 M 6 THR B 552 ASP B 555 -1 N LEU B 554 O TRP B 582 SHEET 6 M 6 GLU B 561 HIS B 563 -1 O VAL B 562 N TRP B 553 SHEET 1 N 2 GLN B 539 GLN B 544 0 SHEET 2 N 2 GLN B 568 LEU B 573 -1 O LEU B 569 N LEU B 543
LINK OD1 ASN A 143 CA CA A 586 1555 1555 2.49 LINK O ASP A 145 CA CA A 586 1555 1555 2.52 LINK OD1 ASN A 148 CA CA A 586 1555 1555 2.50 LINK OD2 ASP A 149 CA CA A 586 1555 1555 2.32 LINK O GLY A 169 CA CA A 586 1555 1555 2.26 LINK OD2 ASP A 171 CA CA A 586 1555 1555 2.27 LINK OD1 ASN B 143 CA CA B 586 1555 1555 2.33 LINK O ASP B 145 CA CA B 586 1555 1555 2.61 LINK OD1 ASN B 148 CA CA B 586 1555 1555 2.16 LINK OD1 ASP B 149 CA CA B 586 1555 1555 2.30 LINK O GLY B 169 CA CA B 586 1555 1555 2.54 LINK OD1 ASP B 171 CA CA B 586 1555 1555 2.40 LINK CA CA A 586 O HOH A 606 1555 1555 2.46 LINK CA CA B 586 O HOH B 603 1555 1555 2.45
CISPEP 1 PHE A 273 PRO A 274 0 -6.90 CISPEP 2 ASP A 465 PRO A 466 0 15.35 CISPEP 3 PHE B 273 PRO B 274 0 3.84 CISPEP 4 ASP B 465 PRO B 466 0 6.00
SITE 1 AC1 7 ASN A 143 ASP A 145 ASN A 148 ASP A 149 SITE 2 AC1 7 GLY A 169 ASP A 171 HOH A 606 SITE 1 AC2 20 HIS A 164 HIS A 202 TYR A 204 HIS A 244 SITE 2 AC2 20 PHE A 286 MET A 293 ARG A 323 ASP A 325 SITE 3 AC2 20 VAL A 326 GLU A 354 TRP A 356 HIS A 420 SITE 4 AC2 20 ASP A 421 ASP A 465 ARG A 469 HOH A 592 SITE 5 AC2 20 HOH A 615 ARG B 44 TYR B 45 GLN B 112 SITE 1 AC3 7 ASN B 143 ASP B 145 ASN B 148 ASP B 149 SITE 2 AC3 7 GLY B 169 ASP B 171 HOH B 603 SITE 1 AC4 19 ARG A 44 TYR A 45 GLN A 112 HIS B 164 SITE 2 AC4 19 HIS B 202 TYR B 204 HIS B 244 PHE B 286 SITE 3 AC4 19 MET B 293 ARG B 323 ASP B 325 VAL B 326 SITE 4 AC4 19 GLU B 354 TRP B 356 HIS B 420 ASP B 421 SITE 5 AC4 19 ASP B 465 ARG B 469 HOH B 691
CRYST1 114.599 119.258 113.007 90.00 90.00 90.00 P 21 21 21 8
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 0.008726 0.000000 0.000000 0.00000
SCALE2 0.000000 0.008385 0.000000 0.00000
SCALE3 0.000000 0.000000 0.008849 0.00000