10 20 30 40 50 60 70 80 3A37 - Header ----|----|----|----|----|----|----|----|----|----|----|----|----|----|----|----| Asymmetric UnitHEADER HYDROLASE 10-JUN-09 3A37
TITLE STRUCTURAL INSIGHT INTO THE MEMBRANE INSERTION OF TAIL- TITLE 2 ANCHORED PROTEINS BY GET3
COMPND MOL_ID: 1; COMPND 2 MOLECULE: ATPASE GET3; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: ARR4P, GOLGI TO ER TRAFFIC PROTEIN 3, MEMBRANE COMPND 5 PROTEIN INSERTION; COMPND 6 EC: 3.6.3.16; COMPND 7 ENGINEERED: YES
SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE; SOURCE 3 ORGANISM_COMMON: YEAST; SOURCE 4 ORGANISM_TAXID: 4932; SOURCE 5 STRAIN: NRRL Y-53; SOURCE 6 GENE: 851458; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 9 EXPRESSION_SYSTEM_STRAIN: ROSETTA (DE3); SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 11 EXPRESSION_SYSTEM_PLASMID: PET21A
KEYWDS HOMO DIMER, ATPASE, ZINC BINDING, ARSENICAL RESISTANCE, ATP- KEYWDS 2 BINDING, CYTOPLASM, ENDOPLASMIC RETICULUM, ER-GOLGI KEYWDS 3 TRANSPORT, GOLGI APPARATUS, HYDROLASE, NUCLEOTIDE-BINDING, KEYWDS 4 TRANSPORT
EXPDTA X-RAY DIFFRACTION
AUTHOR A.YAMAGATA,H.MIMURA,Y.SATO,M.YAMASHITA,A.YOSHIKAWA,S.FUKAI
REVDAT 1 12-JAN-10 3A37 0
JRNL AUTH A.YAMAGATA,H.MIMURA,Y.SATO,M.YAMASHITA,A.YOSHIKAWA, JRNL AUTH 2 S.FUKAI JRNL TITL STRUCTURAL INSIGHT INTO THE MEMBRANE INSERTION OF JRNL TITL 2 TAIL-ANCHORED PROTEINS BY GET3 JRNL REF GENES CELLS V. 15 29 2010 JRNL REFN ISSN 1356-9597 JRNL PMID 20015340 JRNL DOI 10.1111/J.1365-2443.2009.01362.X
REMARK 1
REMARK 2 REMARK 2 RESOLUTION. 3.00 ANGSTROMS.
REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.2 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES, PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 49.29 REMARK 3 DATA CUTOFF (SIGMA(F)) : -0.500 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 99122.390 REMARK 3 DATA CUTOFF LOW (ABS(F)) : 0.0000 REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 97.2 REMARK 3 NUMBER OF REFLECTIONS : 25604 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.253 REMARK 3 FREE R VALUE : 0.282 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.800 REMARK 3 FREE R VALUE TEST SET COUNT : 1233 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.008 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 6 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 3.00 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 3.19 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 92.60 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 3781 REMARK 3 BIN R VALUE (WORKING SET) : 0.4130 REMARK 3 BIN FREE R VALUE : 0.4080 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 4.70 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 188 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.030 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4870 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 55 REMARK 3 SOLVENT ATOMS : 0 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 93.90 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -30.43000 REMARK 3 B22 (A**2) : 22.91000 REMARK 3 B33 (A**2) : 7.53000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.43 REMARK 3 ESD FROM SIGMAA (A) : 0.83 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.48 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.75 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.009 REMARK 3 BOND ANGLES (DEGREES) : 1.40 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 22.70 REMARK 3 IMPROPER ANGLES (DEGREES) : 0.86 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 1.370 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE (A**2) : 2.500 ; 2.000 REMARK 3 SIDE-CHAIN BOND (A**2) : 1.520 ; 2.000 REMARK 3 SIDE-CHAIN ANGLE (A**2) : 2.550 ; 2.500 REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : FLAT MODEL REMARK 3 KSOL : 0.30 REMARK 3 BSOL : 37.28 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : ION.PARAM REMARK 3 PARAMETER FILE 3 : ADP.PARAM REMARK 3 PARAMETER FILE 4 : NULL REMARK 3 TOPOLOGY FILE 1 : PROTEIN.TOP REMARK 3 TOPOLOGY FILE 2 : ION.TOP REMARK 3 TOPOLOGY FILE 3 : ADP.TOP REMARK 3 TOPOLOGY FILE 4 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: BULK SOLVENT MODEL USED
REMARK 4 REMARK 4 3A37 COMPLIES WITH FORMAT V. 3.20, 01-DEC-08
REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 12-JUN-09. REMARK 100 THE RCSB ID CODE IS RCSB028754.
REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 28-MAY-09 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SPRING-8 REMARK 200 BEAMLINE : BL41XU REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0000 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : NULL REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 25728 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.000 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -0.500 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.8 REMARK 200 DATA REDUNDANCY : 5.000 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.06100 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 23.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.11 REMARK 200 COMPLETENESS FOR SHELL (%) : 94.6 REMARK 200 DATA REDUNDANCY IN SHELL : 3.10 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.34200 REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.500 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: FOURIER SYNTHESIS REMARK 200 SOFTWARE USED: CNS1.2 REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL
REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 68.45 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.90 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 13.5% PEG 3350, 0.18M TRI-SODIUM REMARK 280 CITRATE, 9% MPD, 90MM HEPES, PH 7.5, VAPOR DIFFUSION, SITTING REMARK 280 DROP, TEMPERATURE 273K
REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 57.61450 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 111.27700 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 57.61450 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 111.27700 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL
REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA.
REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2820 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 30100 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -60.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000
REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 ASP A 2 REMARK 465 LEU A 3 REMARK 465 THR A 4 REMARK 465 LEU A 94 REMARK 465 LYS A 95 REMARK 465 ASP A 96 REMARK 465 MET A 97 REMARK 465 ASN A 98 REMARK 465 ASP A 99 REMARK 465 MET A 100 REMARK 465 ALA A 101 REMARK 465 VAL A 102 REMARK 465 SER A 103 REMARK 465 ARG A 104 REMARK 465 ALA A 105 REMARK 465 ASN A 106 REMARK 465 ASN A 107 REMARK 465 ASN A 108 REMARK 465 GLY A 109 REMARK 465 SER A 110 REMARK 465 ASP A 111 REMARK 465 GLY A 112 REMARK 465 GLN A 113 REMARK 465 GLY A 114 REMARK 465 ASP A 115 REMARK 465 ASP A 116 REMARK 465 LEU A 117 REMARK 465 GLY A 118 REMARK 465 SER A 119 REMARK 465 LEU A 120 REMARK 465 LEU A 121 REMARK 465 GLN A 122 REMARK 465 GLY A 123 REMARK 465 GLY A 124 REMARK 465 ALA A 125 REMARK 465 LEU A 126 REMARK 465 GLU A 351 REMARK 465 ASP A 352 REMARK 465 LYS A 353 REMARK 465 GLU A 354 REMARK 465 LEU A 355 REMARK 465 GLU A 356 REMARK 465 HIS A 357 REMARK 465 HIS A 358 REMARK 465 HIS A 359 REMARK 465 HIS A 360 REMARK 465 HIS A 361 REMARK 465 HIS A 362 REMARK 465 MET B 1 REMARK 465 ASP B 2 REMARK 465 GLY B 109 REMARK 465 SER B 110 REMARK 465 ASP B 111 REMARK 465 GLY B 112 REMARK 465 GLN B 113 REMARK 465 GLY B 114 REMARK 465 ASP B 115 REMARK 465 ASP B 116 REMARK 465 LEU B 117 REMARK 465 GLY B 118 REMARK 465 GLU B 192 REMARK 465 ILE B 193 REMARK 465 THR B 194 REMARK 465 ASN B 195 REMARK 465 LYS B 196 REMARK 465 LEU B 197 REMARK 465 GLY B 198 REMARK 465 PRO B 199 REMARK 465 MET B 200 REMARK 465 LEU B 201 REMARK 465 ASN B 202 REMARK 465 SER B 203 REMARK 465 PHE B 204 REMARK 465 MET B 205 REMARK 465 GLY B 206 REMARK 465 ALA B 207 REMARK 465 GLY B 208 REMARK 465 ASN B 209 REMARK 465 VAL B 210 REMARK 465 GLU B 351 REMARK 465 ASP B 352 REMARK 465 LYS B 353 REMARK 465 GLU B 354 REMARK 465 LEU B 355 REMARK 465 GLU B 356 REMARK 465 HIS B 357 REMARK 465 HIS B 358 REMARK 465 HIS B 359 REMARK 465 HIS B 360 REMARK 465 HIS B 361 REMARK 465 HIS B 362
REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS(M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 189 CG CD CE NZ REMARK 470 PHE A 190 CG CD1 CD2 CE1 CE2 CZ REMARK 470 GLU A 192 CG CD OE1 OE2 REMARK 470 ILE A 193 CG1 CG2 CD1 REMARK 470 THR A 194 OG1 CG2 REMARK 470 ASN A 195 CG OD1 ND2 REMARK 470 LYS A 196 CG CD CE NZ REMARK 470 LEU A 197 CG CD1 CD2 REMARK 470 LEU A 201 CG CD1 CD2 REMARK 470 ASN A 202 CG OD1 ND2 REMARK 470 SER A 203 OG REMARK 470 PHE A 204 CG CD1 CD2 CE1 CE2 CZ REMARK 470 MET A 205 CG SD CE REMARK 470 ASP A 280 CG OD1 REMARK 470 GLN A 281 CG CD OE1 NE2 REMARK 470 GLU A 282 CG CD OE1 OE2 REMARK 470 HIS A 283 CG ND1 CD2 CE1 NE2 REMARK 470 ASN A 284 CG OD1 ND2 REMARK 470 LYS B 189 CG CD CE NZ REMARK 470 PHE B 190 CG CD1 CD2 CE1 CE2 CZ REMARK 470 ASP B 211 CG OD1 REMARK 470 ASN B 279 CG OD1 ND2 REMARK 470 ASP B 280 CG OD1 REMARK 470 GLN B 281 CG CD OE1 NE2 REMARK 470 GLU B 282 CG CD OE1 OE2 REMARK 470 HIS B 283 CG ND1 CD2 CE1 NE2 REMARK 470 ASN B 284 CG OD1 ND2
REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OG SER A 63 OE2 GLU A 87 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 128 15.56 -164.27 REMARK 500 SER A 132 -53.38 -135.62 REMARK 500 THR A 173 -46.10 -16.03 REMARK 500 PHE A 176 -19.92 -48.76 REMARK 500 LYS A 196 59.83 -111.28 REMARK 500 PHE A 276 82.45 -69.56 REMARK 500 ASP A 280 32.72 -62.31 REMARK 500 GLN A 281 22.87 47.11 REMARK 500 HIS A 283 36.22 -69.52 REMARK 500 ASN A 284 -132.87 58.73 REMARK 500 CYS A 285 98.64 46.05 REMARK 500 GLU A 337 128.31 -34.66 REMARK 500 ALA B 125 97.07 178.81 REMARK 500 SER B 132 -57.16 -134.48 REMARK 500 THR B 173 -44.48 -18.91 REMARK 500 LYS B 220 -8.49 -55.75 REMARK 500 GLN B 229 -61.21 -90.96 REMARK 500 ASP B 263 14.96 83.78 REMARK 500 PHE B 276 79.08 -69.23 REMARK 500 ASN B 279 -7.43 -44.55 REMARK 500 HIS B 283 10.15 -55.84 REMARK 500 ASN B 284 -19.66 -47.36 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 TYR B 250 0.06 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL
REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 363 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 285 SG REMARK 620 2 CYS A 288 SG 101.4 REMARK 620 3 CYS B 285 SG 125.3 118.5 REMARK 620 4 CYS B 288 SG 103.9 97.3 106.3 REMARK 620 N 1 2 3
REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ADP A 400 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ADP B 401 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 363
REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3A36 RELATED DB: PDB
DBREF 3A37 A 1 354 UNP Q12154 GET3_YEAST 1 354 DBREF 3A37 B 1 354 UNP Q12154 GET3_YEAST 1 354
SEQADV 3A37 ASP A 155 UNP Q12154 GLY 155 CONFLICT SEQADV 3A37 LEU A 355 UNP Q12154 EXPRESSION TAG SEQADV 3A37 GLU A 356 UNP Q12154 EXPRESSION TAG SEQADV 3A37 HIS A 357 UNP Q12154 EXPRESSION TAG SEQADV 3A37 HIS A 358 UNP Q12154 EXPRESSION TAG SEQADV 3A37 HIS A 359 UNP Q12154 EXPRESSION TAG SEQADV 3A37 HIS A 360 UNP Q12154 EXPRESSION TAG SEQADV 3A37 HIS A 361 UNP Q12154 EXPRESSION TAG SEQADV 3A37 HIS A 362 UNP Q12154 EXPRESSION TAG SEQADV 3A37 ASP B 155 UNP Q12154 GLY 155 CONFLICT SEQADV 3A37 LEU B 355 UNP Q12154 EXPRESSION TAG SEQADV 3A37 GLU B 356 UNP Q12154 EXPRESSION TAG SEQADV 3A37 HIS B 357 UNP Q12154 EXPRESSION TAG SEQADV 3A37 HIS B 358 UNP Q12154 EXPRESSION TAG SEQADV 3A37 HIS B 359 UNP Q12154 EXPRESSION TAG SEQADV 3A37 HIS B 360 UNP Q12154 EXPRESSION TAG SEQADV 3A37 HIS B 361 UNP Q12154 EXPRESSION TAG SEQADV 3A37 HIS B 362 UNP Q12154 EXPRESSION TAG
SEQRES 1 A 362 MET ASP LEU THR VAL GLU PRO ASN LEU HIS SER LEU ILE SEQRES 2 A 362 THR SER THR THR HIS LYS TRP ILE PHE VAL GLY GLY LYS SEQRES 3 A 362 GLY GLY VAL GLY LYS THR THR SER SER CYS SER ILE ALA SEQRES 4 A 362 ILE GLN MET ALA LEU SER GLN PRO ASN LYS GLN PHE LEU SEQRES 5 A 362 LEU ILE SER THR ASP PRO ALA HIS ASN LEU SER ASP ALA SEQRES 6 A 362 PHE GLY GLU LYS PHE GLY LYS ASP ALA ARG LYS VAL THR SEQRES 7 A 362 GLY MET ASN ASN LEU SER CYS MET GLU ILE ASP PRO SER SEQRES 8 A 362 ALA ALA LEU LYS ASP MET ASN ASP MET ALA VAL SER ARG SEQRES 9 A 362 ALA ASN ASN ASN GLY SER ASP GLY GLN GLY ASP ASP LEU SEQRES 10 A 362 GLY SER LEU LEU GLN GLY GLY ALA LEU ALA ASP LEU THR SEQRES 11 A 362 GLY SER ILE PRO GLY ILE ASP GLU ALA LEU SER PHE MET SEQRES 12 A 362 GLU VAL MET LYS HIS ILE LYS ARG GLN GLU GLN ASP GLU SEQRES 13 A 362 GLY GLU THR PHE ASP THR VAL ILE PHE ASP THR ALA PRO SEQRES 14 A 362 THR GLY HIS THR LEU ARG PHE LEU GLN LEU PRO ASN THR SEQRES 15 A 362 LEU SER LYS LEU LEU GLU LYS PHE GLY GLU ILE THR ASN SEQRES 16 A 362 LYS LEU GLY PRO MET LEU ASN SER PHE MET GLY ALA GLY SEQRES 17 A 362 ASN VAL ASP ILE SER GLY LYS LEU ASN GLU LEU LYS ALA SEQRES 18 A 362 ASN VAL GLU THR ILE ARG GLN GLN PHE THR ASP PRO ASP SEQRES 19 A 362 LEU THR THR PHE VAL CYS VAL CYS ILE SER GLU PHE LEU SEQRES 20 A 362 SER LEU TYR GLU THR GLU ARG LEU ILE GLN GLU LEU ILE SEQRES 21 A 362 SER TYR ASP MET ASP VAL ASN SER ILE ILE VAL ASN GLN SEQRES 22 A 362 LEU LEU PHE ALA GLU ASN ASP GLN GLU HIS ASN CYS LYS SEQRES 23 A 362 ARG CYS GLN ALA ARG TRP LYS MET GLN LYS LYS TYR LEU SEQRES 24 A 362 ASP GLN ILE ASP GLU LEU TYR GLU ASP PHE HIS VAL VAL SEQRES 25 A 362 LYS MET PRO LEU CYS ALA GLY GLU ILE ARG GLY LEU ASN SEQRES 26 A 362 ASN LEU THR LYS PHE SER GLN PHE LEU ASN LYS GLU TYR SEQRES 27 A 362 ASN PRO ILE THR ASP GLY LYS VAL ILE TYR GLU LEU GLU SEQRES 28 A 362 ASP LYS GLU LEU GLU HIS HIS HIS HIS HIS HIS SEQRES 1 B 362 MET ASP LEU THR VAL GLU PRO ASN LEU HIS SER LEU ILE SEQRES 2 B 362 THR SER THR THR HIS LYS TRP ILE PHE VAL GLY GLY LYS SEQRES 3 B 362 GLY GLY VAL GLY LYS THR THR SER SER CYS SER ILE ALA SEQRES 4 B 362 ILE GLN MET ALA LEU SER GLN PRO ASN LYS GLN PHE LEU SEQRES 5 B 362 LEU ILE SER THR ASP PRO ALA HIS ASN LEU SER ASP ALA SEQRES 6 B 362 PHE GLY GLU LYS PHE GLY LYS ASP ALA ARG LYS VAL THR SEQRES 7 B 362 GLY MET ASN ASN LEU SER CYS MET GLU ILE ASP PRO SER SEQRES 8 B 362 ALA ALA LEU LYS ASP MET ASN ASP MET ALA VAL SER ARG SEQRES 9 B 362 ALA ASN ASN ASN GLY SER ASP GLY GLN GLY ASP ASP LEU SEQRES 10 B 362 GLY SER LEU LEU GLN GLY GLY ALA LEU ALA ASP LEU THR SEQRES 11 B 362 GLY SER ILE PRO GLY ILE ASP GLU ALA LEU SER PHE MET SEQRES 12 B 362 GLU VAL MET LYS HIS ILE LYS ARG GLN GLU GLN ASP GLU SEQRES 13 B 362 GLY GLU THR PHE ASP THR VAL ILE PHE ASP THR ALA PRO SEQRES 14 B 362 THR GLY HIS THR LEU ARG PHE LEU GLN LEU PRO ASN THR SEQRES 15 B 362 LEU SER LYS LEU LEU GLU LYS PHE GLY GLU ILE THR ASN SEQRES 16 B 362 LYS LEU GLY PRO MET LEU ASN SER PHE MET GLY ALA GLY SEQRES 17 B 362 ASN VAL ASP ILE SER GLY LYS LEU ASN GLU LEU LYS ALA SEQRES 18 B 362 ASN VAL GLU THR ILE ARG GLN GLN PHE THR ASP PRO ASP SEQRES 19 B 362 LEU THR THR PHE VAL CYS VAL CYS ILE SER GLU PHE LEU SEQRES 20 B 362 SER LEU TYR GLU THR GLU ARG LEU ILE GLN GLU LEU ILE SEQRES 21 B 362 SER TYR ASP MET ASP VAL ASN SER ILE ILE VAL ASN GLN SEQRES 22 B 362 LEU LEU PHE ALA GLU ASN ASP GLN GLU HIS ASN CYS LYS SEQRES 23 B 362 ARG CYS GLN ALA ARG TRP LYS MET GLN LYS LYS TYR LEU SEQRES 24 B 362 ASP GLN ILE ASP GLU LEU TYR GLU ASP PHE HIS VAL VAL SEQRES 25 B 362 LYS MET PRO LEU CYS ALA GLY GLU ILE ARG GLY LEU ASN SEQRES 26 B 362 ASN LEU THR LYS PHE SER GLN PHE LEU ASN LYS GLU TYR SEQRES 27 B 362 ASN PRO ILE THR ASP GLY LYS VAL ILE TYR GLU LEU GLU SEQRES 28 B 362 ASP LYS GLU LEU GLU HIS HIS HIS HIS HIS HIS
HET ADP A 400 27 HET ADP B 401 27 HET ZN A 363 1
HETNAM ADP ADENOSINE-5'-DIPHOSPHATE HETNAM ZN ZINC ION
FORMUL 3 ADP 2(C10 H15 N5 O10 P2) FORMUL 5 ZN ZN 2+
HELIX 1 1 LEU A 9 SER A 15 1 7 HELIX 2 2 GLY A 30 GLN A 46 1 17 HELIX 3 3 HIS A 60 GLY A 67 1 8 HELIX 4 4 ASP A 128 SER A 132 5 5 HELIX 5 5 GLY A 135 GLU A 156 1 22 HELIX 6 6 LEU A 174 LEU A 177 5 4 HELIX 7 7 GLN A 178 THR A 194 1 17 HELIX 8 8 GLY A 198 SER A 203 1 6 HELIX 9 9 ASN A 209 THR A 231 1 23 HELIX 10 10 GLU A 245 TYR A 262 1 18 HELIX 11 11 CYS A 285 TYR A 306 1 22 HELIX 12 12 ARG A 322 LYS A 336 1 15 HELIX 13 13 ASP A 343 TYR A 348 1 6 HELIX 14 14 LEU B 9 SER B 15 1 7 HELIX 15 15 GLY B 30 GLN B 46 1 17 HELIX 16 16 HIS B 60 GLY B 67 1 8 HELIX 17 17 ASP B 89 ASN B 107 1 19 HELIX 18 18 ASP B 128 SER B 132 5 5 HELIX 19 19 GLY B 135 GLU B 156 1 22 HELIX 20 20 LEU B 174 LEU B 177 5 4 HELIX 21 21 GLN B 178 PHE B 190 1 13 HELIX 22 22 ASP B 211 THR B 231 1 21 HELIX 23 23 GLU B 245 TYR B 262 1 18 HELIX 24 24 PHE B 276 ASP B 280 5 5 HELIX 25 25 CYS B 285 TYR B 306 1 22 HELIX 26 26 ARG B 322 LYS B 336 1 15 HELIX 27 27 ASP B 343 TYR B 348 1 6
SHEET 1 A 8 ARG A 75 LYS A 76 0 SHEET 2 A 8 LEU A 83 GLU A 87 -1 O CYS A 85 N ARG A 75 SHEET 3 A 8 PHE A 51 SER A 55 1 N PHE A 51 O SER A 84 SHEET 4 A 8 THR A 162 ASP A 166 1 O ILE A 164 N LEU A 52 SHEET 5 A 8 TRP A 20 GLY A 24 1 N ILE A 21 O PHE A 165 SHEET 6 A 8 THR A 236 ILE A 243 1 O VAL A 239 N PHE A 22 SHEET 7 A 8 VAL A 266 LEU A 274 1 O ILE A 270 N CYS A 240 SHEET 8 A 8 HIS A 310 PRO A 315 1 O HIS A 310 N ASN A 267 SHEET 1 B 8 ARG B 75 LYS B 76 0 SHEET 2 B 8 LEU B 83 GLU B 87 -1 O CYS B 85 N ARG B 75 SHEET 3 B 8 PHE B 51 SER B 55 1 N PHE B 51 O SER B 84 SHEET 4 B 8 THR B 162 ASP B 166 1 O ILE B 164 N LEU B 52 SHEET 5 B 8 TRP B 20 GLY B 24 1 N ILE B 21 O PHE B 165 SHEET 6 B 8 THR B 236 ILE B 243 1 O VAL B 239 N PHE B 22 SHEET 7 B 8 VAL B 266 LEU B 274 1 O ILE B 270 N CYS B 242 SHEET 8 B 8 HIS B 310 PRO B 315 1 O HIS B 310 N ASN B 267
LINK SG CYS A 285 ZN ZN A 363 1555 1555 2.20 LINK SG CYS A 288 ZN ZN A 363 1555 1555 2.22 LINK SG CYS B 285 ZN ZN A 363 1555 1555 2.26 LINK SG CYS B 288 ZN ZN A 363 1555 1555 2.59
SITE 1 AC1 16 GLY A 27 GLY A 28 VAL A 29 GLY A 30 SITE 2 AC1 16 LYS A 31 THR A 32 THR A 33 ASN A 272 SITE 3 AC1 16 GLN A 273 PRO A 315 LEU A 316 CYS A 317 SITE 4 AC1 16 GLY A 319 GLU A 320 ILE A 321 ARG A 322 SITE 1 AC2 13 GLY B 27 VAL B 29 GLY B 30 LYS B 31 SITE 2 AC2 13 THR B 32 THR B 33 ASN B 272 PRO B 315 SITE 3 AC2 13 LEU B 316 CYS B 317 GLY B 319 ILE B 321 SITE 4 AC2 13 PHE B 330 SITE 1 AC3 4 CYS A 285 CYS A 288 CYS B 285 CYS B 288
CRYST1 115.229 222.554 49.291 90.00 90.00 90.00 P 21 21 2 8
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 0.008678 0.000000 0.000000 0.00000
SCALE2 0.000000 0.004493 0.000000 0.00000
SCALE3 0.000000 0.000000 0.020288 0.00000