10 20 30 40 50 60 70 80 2ZUQ - Header ----|----|----|----|----|----|----|----|----|----|----|----|----|----|----|----| Asymmetric UnitHEADER OXIDOREDUCTASE/IMMUNE SYSTEM 28-OCT-08 2ZUQ
TITLE CRYSTAL STRUCTURE OF DSBB-FAB COMPLEX
COMPND MOL_ID: 1; COMPND 2 MOLECULE: DISULFIDE BOND FORMATION PROTEIN B; COMPND 3 CHAIN: A, D; COMPND 4 SYNONYM: DSBB, DISULFIDE OXIDOREDUCTASE; COMPND 5 EC: 1.8.5.-; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES; COMPND 8 MOL_ID: 2; COMPND 9 MOLECULE: FAB FRAGMENT LIGHT CHAIN; COMPND 10 CHAIN: B, E; COMPND 11 MOL_ID: 3; COMPND 12 MOLECULE: FAB FRAGMENT HEAVY CHAIN; COMPND 13 CHAIN: C, F
SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 3 ORGANISM_TAXID: 83333; SOURCE 4 STRAIN: K12; SOURCE 5 GENE: DSBB; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: M15; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PQE70; SOURCE 11 MOL_ID: 2; SOURCE 12 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 13 ORGANISM_COMMON: MOUSE; SOURCE 14 ORGANISM_TAXID: 10090; SOURCE 15 OTHER_DETAILS: FAB FRAGMENT IS OBTAINED BY PAPAIN SOURCE 16 DIGESTION OF A SELECTED MONOCLONAL ANTIBODY.; SOURCE 17 MOL_ID: 3; SOURCE 18 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 19 ORGANISM_COMMON: MOUSE; SOURCE 20 ORGANISM_TAXID: 10090; SOURCE 21 OTHER_DETAILS: FAB FRAGMENT IS OBTAINED BY PAPAIN SOURCE 22 DIGESTION OF A SELECTED MONOCLONAL ANTIBODY.
KEYWDS DISULFIDE BOND, MEMBRANE PROTEIN, FAB, E. COLI, CELL INNER KEYWDS 2 MEMBRANE, CELL MEMBRANE, CHAPERONE, ELECTRON TRANSPORT, KEYWDS 3 MEMBRANE, OXIDOREDUCTASE, REDOX-ACTIVE CENTER, KEYWDS 4 TRANSMEMBRANE, TRANSPORT, OXIDOREDUCTASE/IMMUNE SYSTEM KEYWDS 5 COMPLEX
EXPDTA X-RAY DIFFRACTION
AUTHOR K.INABA,M.SUZUKI,S.MURAKAMI
REVDAT 1 14-APR-09 2ZUQ 0
JRNL AUTH K.INABA,S.MURAKAMI,A.NAKAGAWA,H.IIDA,M.KINJO,K.ITO, JRNL AUTH 2 M.SUZUKI JRNL TITL DYNAMIC NATURE OF DISULPHIDE BOND FORMATION JRNL TITL 2 CATALYSTS REVEALED BY CRYSTAL STRUCTURES OF DSBB JRNL REF EMBO J. V. 28 779 2009 JRNL REFN ISSN 0261-4189 JRNL PMID 19214188 JRNL DOI 10.1038/EMBOJ.2009.21
REMARK 1
REMARK 2 REMARK 2 RESOLUTION. 3.30 ANGSTROMS.
REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0044 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 45.64 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 3 NUMBER OF REFLECTIONS : 23953 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.279 REMARK 3 R VALUE (WORKING SET) : 0.275 REMARK 3 FREE R VALUE : 0.351 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.200 REMARK 3 FREE R VALUE TEST SET COUNT : 1316 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 3.30 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 3.39 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1638 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 93.37 REMARK 3 BIN R VALUE (WORKING SET) : 0.3430 REMARK 3 BIN FREE R VALUE SET COUNT : 95 REMARK 3 BIN FREE R VALUE : 0.4190 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 8955 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 36 REMARK 3 SOLVENT ATOMS : 0 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 114.49 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 3.00000 REMARK 3 B22 (A**2) : 1.36000 REMARK 3 B33 (A**2) : -5.07000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -1.23000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.725 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.664 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 39.752 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.861 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.844 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 9222 ; 0.011 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 12561 ; 1.492 ; 1.961 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 1149 ; 8.068 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 345 ;35.766 ;23.797 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1477 ;23.161 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 36 ;15.443 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 1420 ; 0.105 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 6856 ; 0.007 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 5778 ; 0.495 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 9343 ; 0.923 ; 2.000 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 3444 ; 0.845 ; 3.000 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 3218 ; 1.527 ; 4.500 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL
REMARK 4 REMARK 4 2ZUQ COMPLIES WITH FORMAT V. 3.20, 01-DEC-08
REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 30-OCT-08. REMARK 100 THE RCSB ID CODE IS RCSB028449.
REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 19-MAY-08 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SPRING-8 REMARK 200 BEAMLINE : BL44XU REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.90 REMARK 200 MONOCHROMATOR : SI(111)DOUBLE CRYSTAL REMARK 200 OPTICS : LH-COATED MIRROR REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : MACSCIENCE REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 25296 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.300 REMARK 200 RESOLUTION RANGE LOW (A) : 47.510 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 200 DATA REDUNDANCY : 3.700 REMARK 200 R MERGE (I) : 0.08600 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 11.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.30 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.48 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.0 REMARK 200 DATA REDUNDANCY IN SHELL : 3.60 REMARK 200 R MERGE FOR SHELL (I) : 0.86500 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 1.700 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 1IGT REMARK 200 REMARK 200 REMARK: NULL
REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 58.66 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.98 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 15% PEG3350, PH 7, VAPOR DIFFUSION, REMARK 280 TEMPERATURE 293K
REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 134.65350 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 25.74000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 134.65350 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 25.74000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL
REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA.
REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: D, E, F REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000
REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 LEU A 2 REMARK 465 ARG A 3 REMARK 465 PHE A 4 REMARK 465 LEU A 5 REMARK 465 ASN A 6 REMARK 465 GLN A 7 REMARK 465 ALA A 8 REMARK 465 SER A 9 REMARK 465 ARG A 109 REMARK 465 PHE A 110 REMARK 465 PRO A 111 REMARK 465 GLU A 112 REMARK 465 TRP A 113 REMARK 465 SER A 163 REMARK 465 GLN A 164 REMARK 465 PRO A 165 REMARK 465 PHE A 166 REMARK 465 LYS A 167 REMARK 465 ALA A 168 REMARK 465 LYS A 169 REMARK 465 LYS A 170 REMARK 465 ARG A 171 REMARK 465 ASP A 172 REMARK 465 LEU A 173 REMARK 465 PHE A 174 REMARK 465 GLY A 175 REMARK 465 ARG A 176 REMARK 465 MET B 1 REMARK 465 ASP B 2 REMARK 465 SER B 3 REMARK 465 GLN B 4 REMARK 465 ALA B 5 REMARK 465 GLN B 6 REMARK 465 VAL B 7 REMARK 465 LEU B 8 REMARK 465 ILE B 9 REMARK 465 LEU B 10 REMARK 465 LEU B 11 REMARK 465 LEU B 12 REMARK 465 LEU B 13 REMARK 465 TRP B 14 REMARK 465 VAL B 15 REMARK 465 SER B 16 REMARK 465 GLY B 17 REMARK 465 THR B 18 REMARK 465 CYS B 19 REMARK 465 GLY B 20 REMARK 465 ARG B 133 REMARK 465 TYR C 101 REMARK 465 ARG C 102 REMARK 465 SER C 103 REMARK 465 TYR C 104 REMARK 465 ALA C 120 REMARK 465 MET D 1 REMARK 465 LEU D 2 REMARK 465 ARG D 3 REMARK 465 PHE D 4 REMARK 465 LEU D 5 REMARK 465 ASN D 6 REMARK 465 GLN D 7 REMARK 465 ALA D 8 REMARK 465 SER D 9 REMARK 465 ARG D 109 REMARK 465 PHE D 110 REMARK 465 PRO D 111 REMARK 465 GLU D 112 REMARK 465 TRP D 113 REMARK 465 SER D 163 REMARK 465 GLN D 164 REMARK 465 PRO D 165 REMARK 465 PHE D 166 REMARK 465 LYS D 167 REMARK 465 ALA D 168 REMARK 465 LYS D 169 REMARK 465 LYS D 170 REMARK 465 ARG D 171 REMARK 465 ASP D 172 REMARK 465 LEU D 173 REMARK 465 PHE D 174 REMARK 465 GLY D 175 REMARK 465 ARG D 176 REMARK 465 MET E 1 REMARK 465 ASP E 2 REMARK 465 SER E 3 REMARK 465 GLN E 4 REMARK 465 ALA E 5 REMARK 465 GLN E 6 REMARK 465 VAL E 7 REMARK 465 LEU E 8 REMARK 465 ILE E 9 REMARK 465 LEU E 10 REMARK 465 LEU E 11 REMARK 465 LEU E 12 REMARK 465 LEU E 13 REMARK 465 TRP E 14 REMARK 465 VAL E 15 REMARK 465 SER E 16 REMARK 465 GLY E 17 REMARK 465 THR E 18 REMARK 465 CYS E 19 REMARK 465 GLY E 20 REMARK 465 ARG E 133 REMARK 465 ALA F 120 REMARK 465 ILE F 216 REMARK 465 GLU F 217 REMARK 465 PRO F 218 REMARK 465 ARG F 219 REMARK 465 GLY F 220 REMARK 465 PRO F 221
REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NZ LYS B 44 OD1 ASP B 96 1.85 REMARK 500 O ALA C 28 OG SER C 31 2.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 CYS C 134 CA - CB - SG ANGL. DEV. = 6.7 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 14 7.63 -56.01 REMARK 500 TRP A 15 -59.68 -126.46 REMARK 500 ALA A 24 27.97 -78.77 REMARK 500 LEU A 25 -56.34 -150.08 REMARK 500 VAL A 35 -61.86 -99.26 REMARK 500 LEU A 37 100.17 -25.90 REMARK 500 LEU A 38 77.85 55.04 REMARK 500 PRO A 40 165.12 -36.59 REMARK 500 SER A 41 -62.15 -138.44 REMARK 500 VAL A 42 -126.82 55.92 REMARK 500 LEU A 55 -77.13 -42.55 REMARK 500 ALA A 62 -89.65 -88.12 REMARK 500 ALA A 64 74.01 49.23 REMARK 500 PRO A 65 -78.57 -31.92 REMARK 500 LYS A 66 -54.96 -126.73 REMARK 500 THR A 67 -24.18 -166.12 REMARK 500 TYR A 79 -71.34 -61.48 REMARK 500 LEU A 94 12.03 -62.17 REMARK 500 LEU A 96 9.05 -66.29 REMARK 500 TYR A 97 73.40 177.45 REMARK 500 PRO A 100 -18.86 -34.05 REMARK 500 ALA A 102 -155.17 55.39 REMARK 500 THR A 103 -60.25 -175.15 REMARK 500 CYS A 104 60.98 76.63 REMARK 500 PHE A 106 -106.75 -142.63 REMARK 500 MET A 107 -166.70 48.32 REMARK 500 LEU A 116 -75.65 -68.88 REMARK 500 TRP A 119 9.43 -61.45 REMARK 500 VAL A 123 -6.30 -143.19 REMARK 500 SER A 127 65.06 -114.13 REMARK 500 CYS A 130 85.32 61.16 REMARK 500 TRP A 135 43.52 -92.38 REMARK 500 LEU A 138 33.07 77.33 REMARK 500 TRP A 145 -74.35 -58.59 REMARK 500 LEU A 146 -36.37 -35.70 REMARK 500 VAL A 156 -91.63 -70.09 REMARK 500 ALA A 157 -71.73 -7.49 REMARK 500 VAL A 158 -79.75 -73.87 REMARK 500 VAL A 161 -80.37 -134.22 REMARK 500 ALA B 35 93.34 -55.06 REMARK 500 THR B 54 126.28 62.23 REMARK 500 ARG B 55 101.82 -54.72 REMARK 500 LEU B 73 -51.99 -128.35 REMARK 500 TRP B 76 -44.45 55.54 REMARK 500 ALA B 77 -35.34 158.96 REMARK 500 SER B 82 101.79 -25.14 REMARK 500 ASP B 86 -26.94 -38.16 REMARK 500 SER B 93 135.05 175.61 REMARK 500 VAL B 104 100.92 -53.71 REMARK 500 LEU B 120 -170.25 63.56 REMARK 500 THR B 139 76.32 -115.68 REMARK 500 SER B 141 115.57 -169.13 REMARK 500 PRO B 145 162.38 -46.82 REMARK 500 SER B 147 -59.51 -24.92 REMARK 500 LEU B 161 74.37 -119.82 REMARK 500 TYR B 165 131.66 -174.10 REMARK 500 ASP B 176 -25.01 50.10 REMARK 500 GLN B 181 -41.05 -131.18 REMARK 500 ASN B 182 101.05 -47.72 REMARK 500 SER B 187 125.63 -170.47 REMARK 500 GLN B 191 129.87 -20.32 REMARK 500 TYR B 198 177.20 -51.60 REMARK 500 HIS B 214 -167.85 -119.38 REMARK 500 ASN B 215 -61.52 -121.76 REMARK 500 THR B 222 -0.50 -153.47 REMARK 500 HIS B 223 130.46 -33.42 REMARK 500 LYS B 224 48.54 -77.26 REMARK 500 THR B 227 45.33 -73.91 REMARK 500 PRO B 229 95.11 -59.02 REMARK 500 ARG B 236 -92.41 -35.41 REMARK 500 ASN B 237 -69.50 11.88 REMARK 500 LEU C 18 136.54 163.74 REMARK 500 ALA C 28 77.79 -59.32 REMARK 500 LYS C 43 1.76 83.80 REMARK 500 ASN C 77 8.17 59.17 REMARK 500 SER C 84 -144.29 -120.27 REMARK 500 SER C 85 67.74 -12.01 REMARK 500 THR C 91 100.98 -44.76 REMARK 500 MET C 106 106.01 -58.93 REMARK 500 GLN C 111 -18.34 -157.26 REMARK 500 PRO C 132 -179.84 -68.47 REMARK 500 VAL C 133 124.96 -38.70 REMARK 500 THR C 137 88.58 -27.22 REMARK 500 SER C 140 -52.56 -143.67 REMARK 500 SER C 178 -101.37 57.45 REMARK 500 ASP C 179 38.52 -162.11 REMARK 500 VAL C 189 149.39 178.13 REMARK 500 TRP C 194 -144.29 -79.37 REMARK 500 PRO C 195 -54.94 -11.90 REMARK 500 ALA C 207 4.82 -62.23 REMARK 500 SER C 208 -5.29 -143.36 REMARK 500 SER C 209 95.45 55.46 REMARK 500 LYS C 211 59.98 -111.43 REMARK 500 PRO C 218 -157.80 -59.38 REMARK 500 ARG D 12 -63.94 7.89 REMARK 500 MET D 18 -70.89 -66.90 REMARK 500 ALA D 19 -33.41 -38.69 REMARK 500 HIS D 34 -62.34 -120.85 REMARK 500 LEU D 37 82.95 54.71 REMARK 500 LEU D 38 96.02 63.30 REMARK 500 SER D 41 -44.38 -160.34 REMARK 500 VAL D 42 -128.33 29.63 REMARK 500 CYS D 44 -22.83 -39.82 REMARK 500 PHE D 52 -5.08 -56.29 REMARK 500 LEU D 55 -81.25 -68.22 REMARK 500 ALA D 57 -70.63 -29.84 REMARK 500 ILE D 63 96.91 -56.94 REMARK 500 ALA D 64 64.19 70.69 REMARK 500 PRO D 65 -52.29 -19.67 REMARK 500 THR D 67 -36.25 -156.06 REMARK 500 ILE D 76 15.32 -63.09 REMARK 500 TYR D 97 56.73 -144.85 REMARK 500 PRO D 100 7.10 -66.62 REMARK 500 ALA D 102 159.06 68.12 REMARK 500 THR D 103 -65.67 -143.62 REMARK 500 MET D 107 -165.75 143.06 REMARK 500 LEU D 116 -77.19 -87.11 REMARK 500 PRO D 121 -87.25 -82.36 REMARK 500 PHE D 124 72.19 -108.77 REMARK 500 CYS D 130 61.65 77.83 REMARK 500 LEU D 138 29.36 45.15 REMARK 500 VAL D 156 18.86 -61.95 REMARK 500 ALA D 157 -90.64 -114.20 REMARK 500 VAL D 160 -93.70 -126.61 REMARK 500 GLU E 37 -162.35 -79.60 REMARK 500 ARG E 55 98.65 -44.84 REMARK 500 ASN E 57 68.97 -174.28 REMARK 500 TYR E 58 34.54 88.56 REMARK 500 PRO E 66 150.21 -48.16 REMARK 500 ALA E 77 -41.23 64.19 REMARK 500 SER E 78 -79.50 -92.14 REMARK 500 PRO E 85 156.43 -40.62 REMARK 500 THR E 89 90.30 -162.35 REMARK 500 ASP E 96 76.34 -157.92 REMARK 500 SER E 103 18.31 52.32 REMARK 500 VAL E 104 101.18 -19.42 REMARK 500 GLU E 107 46.10 -88.37 REMARK 500 ALA E 110 171.52 179.40 REMARK 500 LEU E 120 -157.45 57.52 REMARK 500 SER E 147 -56.18 -19.30 REMARK 500 ASN E 163 77.41 53.00 REMARK 500 ASP E 168 93.04 -55.18 REMARK 500 ASP E 176 92.67 20.79 REMARK 500 GLU E 179 79.94 -113.51 REMARK 500 GLN E 191 142.41 -29.15 REMARK 500 LYS E 208 -59.23 -27.89 REMARK 500 ASN E 215 -54.81 -121.38 REMARK 500 THR E 222 40.91 -155.51 REMARK 500 LYS E 232 98.79 -165.54 REMARK 500 ARG E 236 -73.63 -40.11 REMARK 500 ASN E 237 -77.28 9.77 REMARK 500 PRO F 14 102.01 -50.47 REMARK 500 LYS F 19 79.19 -102.07 REMARK 500 ALA F 28 23.08 -67.98 REMARK 500 PHE F 29 -88.29 29.86 REMARK 500 SER F 30 -19.37 -43.12 REMARK 500 SER F 31 -71.45 -45.96 REMARK 500 SER F 52 -169.51 -67.37 REMARK 500 LYS F 65 100.01 -47.69 REMARK 500 ARG F 67 -5.23 -147.54 REMARK 500 ASN F 74 -18.58 -43.83 REMARK 500 ALA F 75 -72.87 -80.86 REMARK 500 SER F 85 64.94 39.70 REMARK 500 ALA F 92 160.82 167.06 REMARK 500 TYR F 101 -64.43 -14.40 REMARK 500 TYR F 104 -6.84 62.54 REMARK 500 MET F 106 91.51 -62.59 REMARK 500 THR F 122 127.22 -34.84 REMARK 500 PRO F 132 -149.98 -64.02 REMARK 500 CYS F 134 -54.96 -26.89 REMARK 500 THR F 137 30.50 -154.62 REMARK 500 THR F 138 89.93 -33.09 REMARK 500 SER F 140 -46.07 -161.39 REMARK 500 CYS F 146 115.41 -162.96 REMARK 500 PHE F 152 140.33 -170.55 REMARK 500 PRO F 153 -165.22 -105.00 REMARK 500 PRO F 155 -152.70 -101.73 REMARK 500 SER F 162 -25.24 63.66 REMARK 500 SER F 166 -62.97 -145.07 REMARK 500 SER F 167 87.77 -35.02 REMARK 500 SER F 178 -126.09 44.71 REMARK 500 TRP F 194 -142.80 -86.73 REMARK 500 PRO F 195 -77.25 19.01 REMARK 500 SER F 196 -87.97 -31.56 REMARK 500 SER F 209 68.19 85.98 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 TRP C 194 PRO C 195 -136.66 REMARK 500 ASN E 57 TYR E 58 49.02 REMARK 500 TRP F 194 PRO F 195 -138.66 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CHIRAL CENTERS REMARK 500 REMARK 500 UNEXPECTED CONFIGURATION OF THE FOLLOWING CHIRAL REMARK 500 CENTER(S) USING IMPROPER CA--C--CB--N CHIRALITY REMARK 500 M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (11X,I3,1X,A3,1X,A1,I4,A1,6X,F5.1,6X,A1,10X,A1,3X,A16) REMARK 500 REMARK 500 M RES CSSEQI IMPROPER EXPECTED FOUND DETAILS REMARK 500 LEU A 38 24.2 L L OUTSIDE RANGE REMARK 500 ASN B 57 23.5 L L OUTSIDE RANGE REMARK 500 REMARK 500 REMARK: NULL
REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE UQ1 A 177 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE UQ1 D 177
REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2HI7 RELATED DB: PDB REMARK 900 THE SAME PROTEIN COMPLEXED WITH DSBA REMARK 900 RELATED ID: 2ZUP RELATED DB: PDB REMARK 900 THE SAME PROTEIN COMPLEXED WITH DSBA
DBREF 2ZUQ A 1 176 UNP P0A6M2 DSBB_ECOLI 1 176 DBREF 2ZUQ D 1 176 UNP P0A6M2 DSBB_ECOLI 1 176 DBREF 2ZUQ B 1 239 PDB 2ZUQ 2ZUQ 1 239 DBREF 2ZUQ E 1 239 PDB 2ZUQ 2ZUQ 1 239 DBREF 2ZUQ C 1 221 PDB 2ZUQ 2ZUQ 1 221 DBREF 2ZUQ F 1 221 PDB 2ZUQ 2ZUQ 1 221
SEQADV 2ZUQ ALA A 8 UNP P0A6M2 CYS 8 ENGINEERED SEQADV 2ZUQ SER A 41 UNP P0A6M2 CYS 41 ENGINEERED SEQADV 2ZUQ VAL A 49 UNP P0A6M2 CYS 49 ENGINEERED SEQADV 2ZUQ ALA D 8 UNP P0A6M2 CYS 8 ENGINEERED SEQADV 2ZUQ SER D 41 UNP P0A6M2 CYS 41 ENGINEERED SEQADV 2ZUQ VAL D 49 UNP P0A6M2 CYS 49 ENGINEERED
SEQRES 1 A 176 MET LEU ARG PHE LEU ASN GLN ALA SER GLN GLY ARG GLY SEQRES 2 A 176 ALA TRP LEU LEU MET ALA PHE THR ALA LEU ALA LEU GLU SEQRES 3 A 176 LEU THR ALA LEU TRP PHE GLN HIS VAL MET LEU LEU LYS SEQRES 4 A 176 PRO SER VAL LEU CYS ILE TYR GLU ARG VAL ALA LEU PHE SEQRES 5 A 176 GLY VAL LEU GLY ALA ALA LEU ILE GLY ALA ILE ALA PRO SEQRES 6 A 176 LYS THR PRO LEU ARG TYR VAL ALA MET VAL ILE TRP LEU SEQRES 7 A 176 TYR SER ALA PHE ARG GLY VAL GLN LEU THR TYR GLU HIS SEQRES 8 A 176 THR MET LEU GLN LEU TYR PRO SER PRO PHE ALA THR CYS SEQRES 9 A 176 ASP PHE MET VAL ARG PHE PRO GLU TRP LEU PRO LEU ASP SEQRES 10 A 176 LYS TRP VAL PRO GLN VAL PHE VAL ALA SER GLY ASP CYS SEQRES 11 A 176 ALA GLU ARG GLN TRP ASP PHE LEU GLY LEU GLU MET PRO SEQRES 12 A 176 GLN TRP LEU LEU GLY ILE PHE ILE ALA TYR LEU ILE VAL SEQRES 13 A 176 ALA VAL LEU VAL VAL ILE SER GLN PRO PHE LYS ALA LYS SEQRES 14 A 176 LYS ARG ASP LEU PHE GLY ARG SEQRES 1 B 239 MET ASP SER GLN ALA GLN VAL LEU ILE LEU LEU LEU LEU SEQRES 2 B 239 TRP VAL SER GLY THR CYS GLY ASP ILE VAL MET SER GLN SEQRES 3 B 239 SER PRO SER SER LEU ALA VAL SER ALA GLY GLU LYS VAL SEQRES 4 B 239 THR MET SER CYS LYS SER SER GLN SER LEU LEU ASN SER SEQRES 5 B 239 ARG THR ARG LYS ASN TYR LEU ALA TRP TYR GLN GLN LYS SEQRES 6 B 239 PRO GLY GLN SER PRO LYS LEU LEU ILE TYR TRP ALA SER SEQRES 7 B 239 THR ARG GLU SER GLY VAL PRO ASP ARG PHE THR GLY SER SEQRES 8 B 239 GLY SER GLY THR ASP PHE THR LEU THR ILE SER SER VAL SEQRES 9 B 239 GLN ALA GLU ASP LEU ALA VAL TYR TYR CYS LYS GLN SER SEQRES 10 B 239 TYR ASN LEU TYR THR PHE GLY GLY GLY THR LYS LEU GLU SEQRES 11 B 239 ILE LYS ARG ALA ASP ALA ALA PRO THR VAL SER ILE PHE SEQRES 12 B 239 PRO PRO SER SER GLU GLN LEU THR SER GLY GLY ALA SER SEQRES 13 B 239 VAL VAL CYS PHE LEU ASN ASN PHE TYR PRO LYS ASP ILE SEQRES 14 B 239 ASN VAL LYS TRP LYS ILE ASP GLY SER GLU ARG GLN ASN SEQRES 15 B 239 GLY VAL LEU ASN SER TRP THR ASP GLN ASP SER LYS ASP SEQRES 16 B 239 SER THR TYR SER MET SER SER THR LEU THR LEU THR LYS SEQRES 17 B 239 ASP GLU TYR GLU ARG HIS ASN SER TYR THR CYS GLU ALA SEQRES 18 B 239 THR HIS LYS THR SER THR SER PRO ILE VAL LYS SER PHE SEQRES 19 B 239 ASN ARG ASN GLU CYS SEQRES 1 C 221 GLU VAL GLN LEU VAL GLU SER GLY GLY GLY LEU VAL LYS SEQRES 2 C 221 PRO GLY GLY SER LEU LYS LEU SER CYS ALA ALA SER GLY SEQRES 3 C 221 PHE ALA PHE SER SER TYR ASP MET SER TRP VAL ARG GLN SEQRES 4 C 221 THR PRO GLU LYS ARG LEU GLU TRP VAL ALA TYR ILE SER SEQRES 5 C 221 SER GLY GLY GLY SER THR TYR TYR PRO ASP THR VAL LYS SEQRES 6 C 221 GLY ARG PHE THR ILE SER ARG ASP ASN ALA LYS ASN THR SEQRES 7 C 221 LEU TYR LEU GLN MET SER SER LEU LYS SER GLU ASP THR SEQRES 8 C 221 ALA MET TYR TYR CYS ALA ARG PRO ASP TYR ARG SER TYR SEQRES 9 C 221 ALA MET ASP TYR TRP GLY GLN GLY THR SER VAL THR VAL SEQRES 10 C 221 SER SER ALA LYS THR THR ALA PRO SER VAL TYR PRO LEU SEQRES 11 C 221 ALA PRO VAL CYS GLY ASP THR THR GLY SER SER VAL THR SEQRES 12 C 221 LEU GLY CYS LEU VAL LYS GLY TYR PHE PRO GLU PRO VAL SEQRES 13 C 221 THR LEU THR TRP ASN SER GLY SER LEU SER SER GLY VAL SEQRES 14 C 221 HIS THR PHE PRO ALA VAL LEU GLN SER ASP LEU TYR THR SEQRES 15 C 221 LEU SER SER SER VAL THR VAL THR SER SER THR TRP PRO SEQRES 16 C 221 SER GLN SER ILE THR CYS ASN VAL ALA HIS PRO ALA SER SEQRES 17 C 221 SER THR LYS VAL ASP LYS LYS ILE GLU PRO ARG GLY PRO SEQRES 1 D 176 MET LEU ARG PHE LEU ASN GLN ALA SER GLN GLY ARG GLY SEQRES 2 D 176 ALA TRP LEU LEU MET ALA PHE THR ALA LEU ALA LEU GLU SEQRES 3 D 176 LEU THR ALA LEU TRP PHE GLN HIS VAL MET LEU LEU LYS SEQRES 4 D 176 PRO SER VAL LEU CYS ILE TYR GLU ARG VAL ALA LEU PHE SEQRES 5 D 176 GLY VAL LEU GLY ALA ALA LEU ILE GLY ALA ILE ALA PRO SEQRES 6 D 176 LYS THR PRO LEU ARG TYR VAL ALA MET VAL ILE TRP LEU SEQRES 7 D 176 TYR SER ALA PHE ARG GLY VAL GLN LEU THR TYR GLU HIS SEQRES 8 D 176 THR MET LEU GLN LEU TYR PRO SER PRO PHE ALA THR CYS SEQRES 9 D 176 ASP PHE MET VAL ARG PHE PRO GLU TRP LEU PRO LEU ASP SEQRES 10 D 176 LYS TRP VAL PRO GLN VAL PHE VAL ALA SER GLY ASP CYS SEQRES 11 D 176 ALA GLU ARG GLN TRP ASP PHE LEU GLY LEU GLU MET PRO SEQRES 12 D 176 GLN TRP LEU LEU GLY ILE PHE ILE ALA TYR LEU ILE VAL SEQRES 13 D 176 ALA VAL LEU VAL VAL ILE SER GLN PRO PHE LYS ALA LYS SEQRES 14 D 176 LYS ARG ASP LEU PHE GLY ARG SEQRES 1 E 239 MET ASP SER GLN ALA GLN VAL LEU ILE LEU LEU LEU LEU SEQRES 2 E 239 TRP VAL SER GLY THR CYS GLY ASP ILE VAL MET SER GLN SEQRES 3 E 239 SER PRO SER SER LEU ALA VAL SER ALA GLY GLU LYS VAL SEQRES 4 E 239 THR MET SER CYS LYS SER SER GLN SER LEU LEU ASN SER SEQRES 5 E 239 ARG THR ARG LYS ASN TYR LEU ALA TRP TYR GLN GLN LYS SEQRES 6 E 239 PRO GLY GLN SER PRO LYS LEU LEU ILE TYR TRP ALA SER SEQRES 7 E 239 THR ARG GLU SER GLY VAL PRO ASP ARG PHE THR GLY SER SEQRES 8 E 239 GLY SER GLY THR ASP PHE THR LEU THR ILE SER SER VAL SEQRES 9 E 239 GLN ALA GLU ASP LEU ALA VAL TYR TYR CYS LYS GLN SER SEQRES 10 E 239 TYR ASN LEU TYR THR PHE GLY GLY GLY THR LYS LEU GLU SEQRES 11 E 239 ILE LYS ARG ALA ASP ALA ALA PRO THR VAL SER ILE PHE SEQRES 12 E 239 PRO PRO SER SER GLU GLN LEU THR SER GLY GLY ALA SER SEQRES 13 E 239 VAL VAL CYS PHE LEU ASN ASN PHE TYR PRO LYS ASP ILE SEQRES 14 E 239 ASN VAL LYS TRP LYS ILE ASP GLY SER GLU ARG GLN ASN SEQRES 15 E 239 GLY VAL LEU ASN SER TRP THR ASP GLN ASP SER LYS ASP SEQRES 16 E 239 SER THR TYR SER MET SER SER THR LEU THR LEU THR LYS SEQRES 17 E 239 ASP GLU TYR GLU ARG HIS ASN SER TYR THR CYS GLU ALA SEQRES 18 E 239 THR HIS LYS THR SER THR SER PRO ILE VAL LYS SER PHE SEQRES 19 E 239 ASN ARG ASN GLU CYS SEQRES 1 F 221 GLU VAL GLN LEU VAL GLU SER GLY GLY GLY LEU VAL LYS SEQRES 2 F 221 PRO GLY GLY SER LEU LYS LEU SER CYS ALA ALA SER GLY SEQRES 3 F 221 PHE ALA PHE SER SER TYR ASP MET SER TRP VAL ARG GLN SEQRES 4 F 221 THR PRO GLU LYS ARG LEU GLU TRP VAL ALA TYR ILE SER SEQRES 5 F 221 SER GLY GLY GLY SER THR TYR TYR PRO ASP THR VAL LYS SEQRES 6 F 221 GLY ARG PHE THR ILE SER ARG ASP ASN ALA LYS ASN THR SEQRES 7 F 221 LEU TYR LEU GLN MET SER SER LEU LYS SER GLU ASP THR SEQRES 8 F 221 ALA MET TYR TYR CYS ALA ARG PRO ASP TYR ARG SER TYR SEQRES 9 F 221 ALA MET ASP TYR TRP GLY GLN GLY THR SER VAL THR VAL SEQRES 10 F 221 SER SER ALA LYS THR THR ALA PRO SER VAL TYR PRO LEU SEQRES 11 F 221 ALA PRO VAL CYS GLY ASP THR THR GLY SER SER VAL THR SEQRES 12 F 221 LEU GLY CYS LEU VAL LYS GLY TYR PHE PRO GLU PRO VAL SEQRES 13 F 221 THR LEU THR TRP ASN SER GLY SER LEU SER SER GLY VAL SEQRES 14 F 221 HIS THR PHE PRO ALA VAL LEU GLN SER ASP LEU TYR THR SEQRES 15 F 221 LEU SER SER SER VAL THR VAL THR SER SER THR TRP PRO SEQRES 16 F 221 SER GLN SER ILE THR CYS ASN VAL ALA HIS PRO ALA SER SEQRES 17 F 221 SER THR LYS VAL ASP LYS LYS ILE GLU PRO ARG GLY PRO
HET UQ1 A 177 18 HET UQ1 D 177 18
HETNAM UQ1 UBIQUINONE-1
FORMUL 7 UQ1 2(C14 H18 O4)
HELIX 1 1 ARG A 12 ALA A 22 1 11 HELIX 2 2 ALA A 22 VAL A 35 1 14 HELIX 3 3 LEU A 43 ILE A 63 1 21 HELIX 4 4 LEU A 69 TYR A 97 1 29 HELIX 5 5 GLU A 141 VAL A 158 1 18 HELIX 6 6 SER B 146 SER B 152 1 7 HELIX 7 7 ASP B 209 HIS B 214 5 6 HELIX 8 8 ASN B 237 CYS B 239 5 3 HELIX 9 9 ALA C 28 TYR C 32 5 5 HELIX 10 10 ARG D 12 VAL D 35 1 24 HELIX 11 11 CYS D 44 VAL D 49 1 6 HELIX 12 12 LEU D 51 ILE D 63 1 13 HELIX 13 13 PRO D 68 TYR D 97 1 30 HELIX 14 14 ASP D 136 LEU D 140 5 5 HELIX 15 15 GLU D 141 PHE D 150 1 10 HELIX 16 16 PHE D 150 ILE D 155 1 6 HELIX 17 17 GLN E 105 LEU E 109 5 5 HELIX 18 18 SER E 146 SER E 152 1 7 HELIX 19 19 LYS E 208 GLU E 212 1 5 HELIX 20 20 ALA F 28 TYR F 32 5 5 HELIX 21 21 LYS F 87 THR F 91 5 5 HELIX 22 22 SER F 162 SER F 164 5 3
SHEET 1 A 4 MET B 24 SER B 27 0 SHEET 2 A 4 VAL B 39 SER B 45 -1 O LYS B 44 N SER B 25 SHEET 3 A 4 ASP B 96 ILE B 101 -1 O ILE B 101 N VAL B 39 SHEET 4 A 4 PHE B 88 GLY B 92 -1 N SER B 91 O THR B 98 SHEET 1 B 5 SER B 30 VAL B 33 0 SHEET 2 B 5 LYS B 128 ILE B 131 1 O LYS B 128 N LEU B 31 SHEET 3 B 5 ALA B 110 GLN B 116 -1 N ALA B 110 O LEU B 129 SHEET 4 B 5 LEU B 59 GLN B 64 -1 N TYR B 62 O TYR B 113 SHEET 5 B 5 LYS B 71 ILE B 74 -1 O LYS B 71 N GLN B 63 SHEET 1 C 4 SER B 30 VAL B 33 0 SHEET 2 C 4 LYS B 128 ILE B 131 1 O LYS B 128 N LEU B 31 SHEET 3 C 4 ALA B 110 GLN B 116 -1 N ALA B 110 O LEU B 129 SHEET 4 C 4 THR B 122 PHE B 123 -1 O THR B 122 N GLN B 116 SHEET 1 D 4 THR B 139 PHE B 143 0 SHEET 2 D 4 GLY B 154 ASN B 162 -1 O VAL B 158 N PHE B 143 SHEET 3 D 4 SER B 201 THR B 207 -1 O LEU B 204 N VAL B 157 SHEET 4 D 4 VAL B 184 LEU B 185 -1 N LEU B 185 O THR B 203 SHEET 1 E 3 LYS B 172 ILE B 175 0 SHEET 2 E 3 SER B 216 GLU B 220 -1 O GLU B 220 N LYS B 172 SHEET 3 E 3 VAL B 231 ASN B 235 -1 O PHE B 234 N TYR B 217 SHEET 1 F 4 GLN C 3 SER C 7 0 SHEET 2 F 4 GLY C 16 SER C 25 -1 O ALA C 23 N VAL C 5 SHEET 3 F 4 THR C 78 LEU C 86 -1 O LEU C 81 N LEU C 20 SHEET 4 F 4 PHE C 68 ASP C 73 -1 N SER C 71 O TYR C 80 SHEET 1 G 6 LEU C 11 VAL C 12 0 SHEET 2 G 6 SER C 114 VAL C 117 1 O THR C 116 N VAL C 12 SHEET 3 G 6 ALA C 92 ALA C 97 -1 N ALA C 92 O VAL C 115 SHEET 4 G 6 MET C 34 GLN C 39 -1 N VAL C 37 O TYR C 95 SHEET 5 G 6 LEU C 45 ILE C 51 -1 O ILE C 51 N MET C 34 SHEET 6 G 6 THR C 58 TYR C 59 -1 O TYR C 59 N TYR C 50 SHEET 1 H 4 SER C 126 LEU C 130 0 SHEET 2 H 4 SER C 141 TYR C 151 -1 O LEU C 147 N TYR C 128 SHEET 3 H 4 TYR C 181 THR C 190 -1 O LEU C 183 N VAL C 148 SHEET 4 H 4 VAL C 169 THR C 171 -1 N HIS C 170 O SER C 186 SHEET 1 I 3 THR C 157 TRP C 160 0 SHEET 2 I 3 THR C 200 HIS C 205 -1 O ASN C 202 N THR C 159 SHEET 3 I 3 THR C 210 LYS C 215 -1 O LYS C 214 N CYS C 201 SHEET 1 J 2 MET E 24 SER E 27 0 SHEET 2 J 2 SER E 42 SER E 45 -1 O SER E 42 N SER E 27 SHEET 1 K 2 LYS E 38 THR E 40 0 SHEET 2 K 2 THR E 100 SER E 102 -1 O ILE E 101 N VAL E 39 SHEET 1 L 4 LYS E 71 ILE E 74 0 SHEET 2 L 4 LEU E 59 GLN E 64 -1 N TRP E 61 O LEU E 73 SHEET 3 L 4 VAL E 111 GLN E 116 -1 O LYS E 115 N ALA E 60 SHEET 4 L 4 THR E 122 PHE E 123 -1 O THR E 122 N GLN E 116 SHEET 1 M 4 LYS E 71 ILE E 74 0 SHEET 2 M 4 LEU E 59 GLN E 64 -1 N TRP E 61 O LEU E 73 SHEET 3 M 4 VAL E 111 GLN E 116 -1 O LYS E 115 N ALA E 60 SHEET 4 M 4 THR E 127 LYS E 128 -1 O THR E 127 N TYR E 112 SHEET 1 N 4 THR E 139 PHE E 143 0 SHEET 2 N 4 GLY E 154 PHE E 164 -1 O ASN E 162 N THR E 139 SHEET 3 N 4 TYR E 198 THR E 207 -1 O MET E 200 N LEU E 161 SHEET 4 N 4 VAL E 184 TRP E 188 -1 N LEU E 185 O THR E 203 SHEET 1 O 3 LYS E 174 ILE E 175 0 SHEET 2 O 3 SER E 216 ALA E 221 -1 O THR E 218 N LYS E 174 SHEET 3 O 3 ILE E 230 ASN E 235 -1 O PHE E 234 N TYR E 217 SHEET 1 P 4 LEU F 4 SER F 7 0 SHEET 2 P 4 LEU F 18 ALA F 24 -1 O SER F 21 N SER F 7 SHEET 3 P 4 THR F 78 MET F 83 -1 O LEU F 81 N LEU F 20 SHEET 4 P 4 PHE F 68 ASP F 73 -1 N THR F 69 O GLN F 82 SHEET 1 Q 2 LEU F 11 VAL F 12 0 SHEET 2 Q 2 THR F 116 VAL F 117 1 O THR F 116 N VAL F 12 SHEET 1 R 5 THR F 58 TYR F 59 0 SHEET 2 R 5 LEU F 45 ILE F 51 -1 N TYR F 50 O TYR F 59 SHEET 3 R 5 MET F 34 GLN F 39 -1 N MET F 34 O ILE F 51 SHEET 4 R 5 MET F 93 PRO F 99 -1 O TYR F 95 N VAL F 37 SHEET 5 R 5 MET F 106 TRP F 109 -1 O TYR F 108 N ARG F 98 SHEET 1 S 4 SER F 126 LEU F 130 0 SHEET 2 S 4 SER F 141 TYR F 151 -1 O LEU F 147 N TYR F 128 SHEET 3 S 4 TYR F 181 THR F 190 -1 O VAL F 187 N LEU F 144 SHEET 4 S 4 VAL F 169 THR F 171 -1 N HIS F 170 O SER F 186 SHEET 1 T 3 THR F 157 TRP F 160 0 SHEET 2 T 3 CYS F 201 HIS F 205 -1 O ALA F 204 N THR F 157 SHEET 3 T 3 THR F 210 LYS F 214 -1 O LYS F 214 N CYS F 201
SSBOND 1 CYS A 104 CYS A 130 1555 1555 2.03 SSBOND 2 CYS B 43 CYS B 114 1555 1555 2.04 SSBOND 3 CYS B 159 CYS B 219 1555 1555 2.04 SSBOND 4 CYS B 239 CYS C 134 1555 1555 2.05 SSBOND 5 CYS C 22 CYS C 96 1555 1555 2.04 SSBOND 6 CYS C 146 CYS C 201 1555 1555 2.04 SSBOND 7 CYS D 104 CYS D 130 1555 1555 2.04 SSBOND 8 CYS E 43 CYS E 114 1555 1555 2.04 SSBOND 9 CYS E 159 CYS E 219 1555 1555 2.05 SSBOND 10 CYS E 239 CYS F 134 1555 1555 2.05 SSBOND 11 CYS F 22 CYS F 96 1555 1555 2.05 SSBOND 12 CYS F 146 CYS F 201 1555 1555 2.03
CISPEP 1 LEU A 37 LEU A 38 0 2.48 CISPEP 2 PRO A 65 LYS A 66 0 -13.61 CISPEP 3 SER B 27 PRO B 28 0 -2.72 CISPEP 4 TYR B 165 PRO B 166 0 3.27 CISPEP 5 PHE C 152 PRO C 153 0 -7.59 CISPEP 6 GLU C 154 PRO C 155 0 -2.41 CISPEP 7 LEU D 37 LEU D 38 0 -2.02 CISPEP 8 PRO D 65 LYS D 66 0 -28.35 CISPEP 9 SER E 27 PRO E 28 0 0.58 CISPEP 10 ARG E 53 THR E 54 0 -22.67 CISPEP 11 TYR E 165 PRO E 166 0 2.60 CISPEP 12 PHE F 152 PRO F 153 0 -15.09 CISPEP 13 GLU F 154 PRO F 155 0 -5.17
SITE 1 AC1 10 LEU A 25 ALA A 29 GLN A 33 PRO A 40 SITE 2 AC1 10 SER A 41 CYS A 44 GLU A 47 MET A 142 SITE 3 AC1 10 PRO A 143 LEU A 146 SITE 1 AC2 9 LEU D 25 ALA D 29 PHE D 32 LEU D 38 SITE 2 AC2 9 CYS D 44 ARG D 48 MET D 142 PRO D 143 SITE 3 AC2 9 LEU D 146
CRYST1 269.307 51.480 125.845 90.00 106.89 90.00 C 1 2 1 8
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 0.003713 0.000000 0.001127 0.00000
SCALE2 0.000000 0.019425 0.000000 0.00000
SCALE3 0.000000 0.000000 0.008304 0.00000