10 20 30 40 50 60 70 80 2ZNM - Header ----|----|----|----|----|----|----|----|----|----|----|----|----|----|----|----| Asymmetric UnitHEADER OXIDOREDUCTASE 30-APR-08 2ZNM
TITLE OXIDOREDUCTASE NMDSBA3 FROM NEISSERIA MENINGITIDIS
COMPND MOL_ID: 1; COMPND 2 MOLECULE: THIOL:DISULFIDE INTERCHANGE PROTEIN DSBA; COMPND 3 CHAIN: A, B, C, D; COMPND 4 FRAGMENT: DSBA3, UNP RESIDUES 20-214; COMPND 5 ENGINEERED: YES
SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: NEISSERIA MENINGITIDIS SEROGROUP B; SOURCE 3 ORGANISM_TAXID: 491; SOURCE 4 STRAIN: SEROGROUP B; SOURCE 5 GENE: DSBA-3, NMB0407; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21 (DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PTRC99A
KEYWDS THIOREDOXIN FOLD, DSBA-LIKE, OXIDOREDUCTASE
EXPDTA X-RAY DIFFRACTION
AUTHOR J.P.VIVIAN,J.SCOULLAR,A.L.ROBERTSON,S.P.BOTTOMLEY,J.HORNE, AUTHOR 2 Y.CHIN,T.VELKOV,J.WIELENS,P.E.THOMPSON,S.PIEK,E.BYRES, AUTHOR 3 T.BEDDOE,M.C.J.WILCE,C.KAHLER,J.ROSSJOHN,M.J.SCANLON
REVDAT 4 09-JUN-09 2ZNM 1 REVDAT REVDAT 3 24-FEB-09 2ZNM 1 VERSN REVDAT 2 02-DEC-08 2ZNM 1 JRNL REVDAT 1 19-AUG-08 2ZNM 0
JRNL AUTH J.P.VIVIAN,J.SCOULLAR,A.L.ROBERTSON,S.P.BOTTOMLEY, JRNL AUTH 2 J.HORNE,Y.CHIN,J.WIELENS,P.E.THOMPSON,T.VELKOV, JRNL AUTH 3 S.PIEK,E.BYRES,T.BEDDOE,M.C.WILCE,C.M.KAHLER, JRNL AUTH 4 J.ROSSJOHN,M.J.SCANLON JRNL TITL STRUCTURAL AND BIOCHEMICAL CHARACTERIZATION OF THE JRNL TITL 2 OXIDOREDUCTASE NMDSBA3 FROM NEISSERIA MENINGITIDIS JRNL REF J.BIOL.CHEM. V. 283 32452 2008 JRNL REFN ISSN 0021-9258 JRNL PMID 18715864 JRNL DOI 10.1074/JBC.M803990200
REMARK 1
REMARK 2 REMARK 2 RESOLUTION. 2.30 ANGSTROMS.
REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.81 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 94.5 REMARK 3 NUMBER OF REFLECTIONS : 30543 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.209 REMARK 3 R VALUE (WORKING SET) : 0.206 REMARK 3 FREE R VALUE : 0.263 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.300 REMARK 3 FREE R VALUE TEST SET COUNT : 1708 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.30 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.36 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1639 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 69.07 REMARK 3 BIN R VALUE (WORKING SET) : 0.2600 REMARK 3 BIN FREE R VALUE SET COUNT : 92 REMARK 3 BIN FREE R VALUE : 0.3410 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5863 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 176 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 42.00 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 53.63 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.19000 REMARK 3 B22 (A**2) : 0.19000 REMARK 3 B33 (A**2) : -0.24000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -0.41000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.479 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.279 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.231 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 19.039 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.951 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.919 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 5991 ; 0.009 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 8080 ; 1.197 ; 1.968 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 736 ; 5.480 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 269 ;33.900 ;23.829 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1076 ;18.613 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 37 ;20.660 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 876 ; 0.079 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4497 ; 0.003 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 2664 ; 0.201 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 4009 ; 0.301 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 235 ; 0.136 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 47 ; 0.191 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 8 ; 0.170 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 3776 ; 0.606 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 5875 ; 0.803 ; 2.000 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2517 ; 1.498 ; 3.000 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 2205 ; 2.055 ; 4.500 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL
REMARK 4 REMARK 4 2ZNM COMPLIES WITH FORMAT V. 3.15, 01-DEC-08
REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 08-MAY-08. REMARK 100 THE RCSB ID CODE IS RCSB028194.
REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-MAR-07 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 23-ID-B REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97939 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 4 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 34110 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.300 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 1.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 94.0 REMARK 200 DATA REDUNDANCY : 5.200 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.04800 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 43.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.30 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.36 REMARK 200 COMPLETENESS FOR SHELL (%) : 65.0 REMARK 200 DATA REDUNDANCY IN SHELL : 3.70 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.27800 REMARK 200 <I/SIGMA(I)> FOR SHELL : 5.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: SOLVE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL
REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 43.90 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.19 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20% PEG4000, 0.1M TRIS, PH8.0, 0.2M REMARK 280 SODIUM ACETATE, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 294K
REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 44.26550 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL
REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3, 4, 5 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA.
REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 4 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 5 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5690 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 34740 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -34.5 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000
REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 TYR A 1 REMARK 465 ALA A 2 REMARK 465 ARG A 188 REMARK 465 GLN A 189 REMARK 465 THR A 190 REMARK 465 PRO A 191 REMARK 465 ALA A 192 REMARK 465 VAL A 193 REMARK 465 GLN A 194 REMARK 465 LYS A 195 REMARK 465 TYR B 1 REMARK 465 ALA B 2 REMARK 465 ARG B 188 REMARK 465 GLN B 189 REMARK 465 THR B 190 REMARK 465 PRO B 191 REMARK 465 ALA B 192 REMARK 465 VAL B 193 REMARK 465 GLN B 194 REMARK 465 LYS B 195 REMARK 465 TYR C 1 REMARK 465 ALA C 2 REMARK 465 GLN C 189 REMARK 465 THR C 190 REMARK 465 PRO C 191 REMARK 465 ALA C 192 REMARK 465 VAL C 193 REMARK 465 GLN C 194 REMARK 465 LYS C 195 REMARK 465 TYR D 1 REMARK 465 ALA D 2 REMARK 465 LYS D 187 REMARK 465 ARG D 188 REMARK 465 GLN D 189 REMARK 465 THR D 190 REMARK 465 PRO D 191 REMARK 465 ALA D 192 REMARK 465 VAL D 193 REMARK 465 GLN D 194 REMARK 465 LYS D 195
REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS(M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS D 110 CG CD CE NZ REMARK 470 LYS D 116 CD CE NZ
REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH C 203 O HOH C 239 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 119 100.00 -65.96 REMARK 500 ARG A 186 48.00 -87.11 REMARK 500 GLN B 98 16.40 58.35 REMARK 500 ARG B 186 44.01 -77.64 REMARK 500 REMARK 500 REMARK: NULL
REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1DSB RELATED DB: PDB REMARK 900 DSBA PROTEIN FROM E.COLI
DBREF 2ZNM A 1 195 UNP Q9K0Z4 Q9K0Z4_NEIMB 20 214 DBREF 2ZNM B 1 195 UNP Q9K0Z4 Q9K0Z4_NEIMB 20 214 DBREF 2ZNM C 1 195 UNP Q9K0Z4 Q9K0Z4_NEIMB 20 214 DBREF 2ZNM D 1 195 UNP Q9K0Z4 Q9K0Z4_NEIMB 20 214
SEQRES 1 A 195 TYR ALA LEU THR GLU GLY GLU ASP TYR LEU VAL LEU ASP SEQRES 2 A 195 LYS PRO ILE PRO GLN GLU GLN SER GLY LYS ILE GLU VAL SEQRES 3 A 195 LEU GLU PHE PHE GLY TYR PHE CYS VAL HIS CYS HIS HIS SEQRES 4 A 195 PHE ASP PRO LEU LEU LEU LYS LEU GLY LYS ALA LEU PRO SEQRES 5 A 195 SER ASP ALA TYR LEU ARG THR GLU HIS VAL VAL TRP GLN SEQRES 6 A 195 PRO GLU MSE LEU GLY LEU ALA ARG MSE ALA ALA ALA VAL SEQRES 7 A 195 ASN LEU SER GLY LEU LYS TYR GLN ALA ASN PRO ALA VAL SEQRES 8 A 195 PHE LYS ALA VAL TYR GLU GLN LYS ILE ARG LEU GLU ASN SEQRES 9 A 195 ARG SER VAL ALA GLY LYS TRP ALA LEU SER GLN LYS GLY SEQRES 10 A 195 PHE ASP GLY LYS LYS LEU MSE ARG ALA TYR ASP SER PRO SEQRES 11 A 195 GLU ALA ALA ALA ALA ALA LEU LYS MSE GLN LYS LEU THR SEQRES 12 A 195 GLU GLN TYR ARG ILE ASP SER THR PRO THR VAL ILE VAL SEQRES 13 A 195 GLY GLY LYS TYR ARG VAL ILE PHE ASN ASN GLY PHE ASP SEQRES 14 A 195 GLY GLY VAL HIS THR ILE LYS GLU LEU VAL ALA LYS VAL SEQRES 15 A 195 ARG GLU GLU ARG LYS ARG GLN THR PRO ALA VAL GLN LYS SEQRES 1 B 195 TYR ALA LEU THR GLU GLY GLU ASP TYR LEU VAL LEU ASP SEQRES 2 B 195 LYS PRO ILE PRO GLN GLU GLN SER GLY LYS ILE GLU VAL SEQRES 3 B 195 LEU GLU PHE PHE GLY TYR PHE CYS VAL HIS CYS HIS HIS SEQRES 4 B 195 PHE ASP PRO LEU LEU LEU LYS LEU GLY LYS ALA LEU PRO SEQRES 5 B 195 SER ASP ALA TYR LEU ARG THR GLU HIS VAL VAL TRP GLN SEQRES 6 B 195 PRO GLU MSE LEU GLY LEU ALA ARG MSE ALA ALA ALA VAL SEQRES 7 B 195 ASN LEU SER GLY LEU LYS TYR GLN ALA ASN PRO ALA VAL SEQRES 8 B 195 PHE LYS ALA VAL TYR GLU GLN LYS ILE ARG LEU GLU ASN SEQRES 9 B 195 ARG SER VAL ALA GLY LYS TRP ALA LEU SER GLN LYS GLY SEQRES 10 B 195 PHE ASP GLY LYS LYS LEU MSE ARG ALA TYR ASP SER PRO SEQRES 11 B 195 GLU ALA ALA ALA ALA ALA LEU LYS MSE GLN LYS LEU THR SEQRES 12 B 195 GLU GLN TYR ARG ILE ASP SER THR PRO THR VAL ILE VAL SEQRES 13 B 195 GLY GLY LYS TYR ARG VAL ILE PHE ASN ASN GLY PHE ASP SEQRES 14 B 195 GLY GLY VAL HIS THR ILE LYS GLU LEU VAL ALA LYS VAL SEQRES 15 B 195 ARG GLU GLU ARG LYS ARG GLN THR PRO ALA VAL GLN LYS SEQRES 1 C 195 TYR ALA LEU THR GLU GLY GLU ASP TYR LEU VAL LEU ASP SEQRES 2 C 195 LYS PRO ILE PRO GLN GLU GLN SER GLY LYS ILE GLU VAL SEQRES 3 C 195 LEU GLU PHE PHE GLY TYR PHE CYS VAL HIS CYS HIS HIS SEQRES 4 C 195 PHE ASP PRO LEU LEU LEU LYS LEU GLY LYS ALA LEU PRO SEQRES 5 C 195 SER ASP ALA TYR LEU ARG THR GLU HIS VAL VAL TRP GLN SEQRES 6 C 195 PRO GLU MSE LEU GLY LEU ALA ARG MSE ALA ALA ALA VAL SEQRES 7 C 195 ASN LEU SER GLY LEU LYS TYR GLN ALA ASN PRO ALA VAL SEQRES 8 C 195 PHE LYS ALA VAL TYR GLU GLN LYS ILE ARG LEU GLU ASN SEQRES 9 C 195 ARG SER VAL ALA GLY LYS TRP ALA LEU SER GLN LYS GLY SEQRES 10 C 195 PHE ASP GLY LYS LYS LEU MSE ARG ALA TYR ASP SER PRO SEQRES 11 C 195 GLU ALA ALA ALA ALA ALA LEU LYS MSE GLN LYS LEU THR SEQRES 12 C 195 GLU GLN TYR ARG ILE ASP SER THR PRO THR VAL ILE VAL SEQRES 13 C 195 GLY GLY LYS TYR ARG VAL ILE PHE ASN ASN GLY PHE ASP SEQRES 14 C 195 GLY GLY VAL HIS THR ILE LYS GLU LEU VAL ALA LYS VAL SEQRES 15 C 195 ARG GLU GLU ARG LYS ARG GLN THR PRO ALA VAL GLN LYS SEQRES 1 D 195 TYR ALA LEU THR GLU GLY GLU ASP TYR LEU VAL LEU ASP SEQRES 2 D 195 LYS PRO ILE PRO GLN GLU GLN SER GLY LYS ILE GLU VAL SEQRES 3 D 195 LEU GLU PHE PHE GLY TYR PHE CYS VAL HIS CYS HIS HIS SEQRES 4 D 195 PHE ASP PRO LEU LEU LEU LYS LEU GLY LYS ALA LEU PRO SEQRES 5 D 195 SER ASP ALA TYR LEU ARG THR GLU HIS VAL VAL TRP GLN SEQRES 6 D 195 PRO GLU MSE LEU GLY LEU ALA ARG MSE ALA ALA ALA VAL SEQRES 7 D 195 ASN LEU SER GLY LEU LYS TYR GLN ALA ASN PRO ALA VAL SEQRES 8 D 195 PHE LYS ALA VAL TYR GLU GLN LYS ILE ARG LEU GLU ASN SEQRES 9 D 195 ARG SER VAL ALA GLY LYS TRP ALA LEU SER GLN LYS GLY SEQRES 10 D 195 PHE ASP GLY LYS LYS LEU MSE ARG ALA TYR ASP SER PRO SEQRES 11 D 195 GLU ALA ALA ALA ALA ALA LEU LYS MSE GLN LYS LEU THR SEQRES 12 D 195 GLU GLN TYR ARG ILE ASP SER THR PRO THR VAL ILE VAL SEQRES 13 D 195 GLY GLY LYS TYR ARG VAL ILE PHE ASN ASN GLY PHE ASP SEQRES 14 D 195 GLY GLY VAL HIS THR ILE LYS GLU LEU VAL ALA LYS VAL SEQRES 15 D 195 ARG GLU GLU ARG LYS ARG GLN THR PRO ALA VAL GLN LYS
MODRES 2ZNM MSE A 68 MET SELENOMETHIONINE MODRES 2ZNM MSE A 74 MET SELENOMETHIONINE MODRES 2ZNM MSE A 124 MET SELENOMETHIONINE MODRES 2ZNM MSE A 139 MET SELENOMETHIONINE MODRES 2ZNM MSE B 68 MET SELENOMETHIONINE MODRES 2ZNM MSE B 74 MET SELENOMETHIONINE MODRES 2ZNM MSE B 124 MET SELENOMETHIONINE MODRES 2ZNM MSE B 139 MET SELENOMETHIONINE MODRES 2ZNM MSE C 68 MET SELENOMETHIONINE MODRES 2ZNM MSE C 74 MET SELENOMETHIONINE MODRES 2ZNM MSE C 124 MET SELENOMETHIONINE MODRES 2ZNM MSE C 139 MET SELENOMETHIONINE MODRES 2ZNM MSE D 68 MET SELENOMETHIONINE MODRES 2ZNM MSE D 74 MET SELENOMETHIONINE MODRES 2ZNM MSE D 124 MET SELENOMETHIONINE MODRES 2ZNM MSE D 139 MET SELENOMETHIONINE
HET MSE A 68 8 HET MSE A 74 8 HET MSE A 124 8 HET MSE A 139 8 HET MSE B 68 8 HET MSE B 74 8 HET MSE B 124 8 HET MSE B 139 8 HET MSE C 68 8 HET MSE C 74 8 HET MSE C 124 8 HET MSE C 139 8 HET MSE D 68 8 HET MSE D 74 8 HET MSE D 124 8 HET MSE D 139 8
HETNAM MSE SELENOMETHIONINE
FORMUL 1 MSE 16(C5 H11 N O2 SE) FORMUL 5 HOH *176(H2 O)
HELIX 1 1 ASP A 41 LEU A 51 1 11 HELIX 2 2 GLN A 65 GLU A 67 5 3 HELIX 3 3 MSE A 68 GLY A 82 1 15 HELIX 4 4 LEU A 83 GLN A 98 1 16 HELIX 5 5 ASN A 104 SER A 114 1 11 HELIX 6 6 ASP A 119 ASP A 128 1 10 HELIX 7 7 SER A 129 TYR A 146 1 18 HELIX 8 8 ASN A 166 ARG A 186 1 21 HELIX 9 9 ASP B 41 LEU B 51 1 11 HELIX 10 10 GLN B 65 GLU B 67 5 3 HELIX 11 11 MSE B 68 SER B 81 1 14 HELIX 12 12 LEU B 83 GLN B 98 1 16 HELIX 13 13 ASN B 104 SER B 114 1 11 HELIX 14 14 ASP B 119 ASP B 128 1 10 HELIX 15 15 SER B 129 TYR B 146 1 18 HELIX 16 16 ASN B 166 ARG B 186 1 21 HELIX 17 17 ASP C 41 LEU C 51 1 11 HELIX 18 18 GLN C 65 GLU C 67 5 3 HELIX 19 19 MSE C 68 SER C 81 1 14 HELIX 20 20 LEU C 83 GLN C 98 1 16 HELIX 21 21 ASN C 104 SER C 114 1 11 HELIX 22 22 ASP C 119 ASP C 128 1 10 HELIX 23 23 SER C 129 TYR C 146 1 18 HELIX 24 24 ASN C 166 ARG C 186 1 21 HELIX 25 25 ASP D 41 LEU D 51 1 11 HELIX 26 26 GLN D 65 GLU D 67 5 3 HELIX 27 27 MSE D 68 SER D 81 1 14 HELIX 28 28 LEU D 83 GLN D 98 1 16 HELIX 29 29 ASN D 104 GLN D 115 1 12 HELIX 30 30 ASP D 119 ASP D 128 1 10 HELIX 31 31 SER D 129 ARG D 147 1 19 HELIX 32 32 PHE D 168 ARG D 186 1 19
SHEET 1 A 5 TYR A 9 VAL A 11 0 SHEET 2 A 5 TYR A 160 VAL A 162 -1 O ARG A 161 N LEU A 10 SHEET 3 A 5 THR A 153 VAL A 156 -1 N VAL A 156 O TYR A 160 SHEET 4 A 5 ILE A 24 PHE A 30 -1 N LEU A 27 O ILE A 155 SHEET 5 A 5 ALA A 55 HIS A 61 1 O ARG A 58 N GLU A 28 SHEET 1 B 5 TYR B 9 VAL B 11 0 SHEET 2 B 5 TYR B 160 VAL B 162 -1 O ARG B 161 N LEU B 10 SHEET 3 B 5 THR B 153 VAL B 156 -1 N VAL B 156 O TYR B 160 SHEET 4 B 5 ILE B 24 PHE B 30 -1 N LEU B 27 O ILE B 155 SHEET 5 B 5 ALA B 55 HIS B 61 1 O ARG B 58 N GLU B 28 SHEET 1 C 5 TYR C 9 VAL C 11 0 SHEET 2 C 5 TYR C 160 VAL C 162 -1 O ARG C 161 N LEU C 10 SHEET 3 C 5 THR C 153 VAL C 156 -1 N VAL C 156 O TYR C 160 SHEET 4 C 5 ILE C 24 PHE C 30 -1 N LEU C 27 O ILE C 155 SHEET 5 C 5 ALA C 55 HIS C 61 1 O ARG C 58 N GLU C 28 SHEET 1 D 5 TYR D 9 VAL D 11 0 SHEET 2 D 5 TYR D 160 VAL D 162 -1 O ARG D 161 N LEU D 10 SHEET 3 D 5 THR D 153 VAL D 156 -1 N VAL D 156 O TYR D 160 SHEET 4 D 5 ILE D 24 PHE D 30 -1 N LEU D 27 O ILE D 155 SHEET 5 D 5 ALA D 55 HIS D 61 1 O ARG D 58 N GLU D 28
LINK C GLU A 67 N MSE A 68 1555 1555 1.33 LINK C MSE A 68 N LEU A 69 1555 1555 1.34 LINK C ARG A 73 N MSE A 74 1555 1555 1.34 LINK C MSE A 74 N ALA A 75 1555 1555 1.33 LINK C LEU A 123 N MSE A 124 1555 1555 1.33 LINK C MSE A 124 N ARG A 125 1555 1555 1.33 LINK C LYS A 138 N MSE A 139 1555 1555 1.33 LINK C MSE A 139 N GLN A 140 1555 1555 1.33 LINK C GLU B 67 N MSE B 68 1555 1555 1.33 LINK C MSE B 68 N LEU B 69 1555 1555 1.33 LINK C ARG B 73 N MSE B 74 1555 1555 1.33 LINK C MSE B 74 N ALA B 75 1555 1555 1.33 LINK C LEU B 123 N MSE B 124 1555 1555 1.33 LINK C MSE B 124 N ARG B 125 1555 1555 1.33 LINK C LYS B 138 N MSE B 139 1555 1555 1.33 LINK C MSE B 139 N GLN B 140 1555 1555 1.33 LINK C GLU C 67 N MSE C 68 1555 1555 1.33 LINK C MSE C 68 N LEU C 69 1555 1555 1.33 LINK C ARG C 73 N MSE C 74 1555 1555 1.33 LINK C MSE C 74 N ALA C 75 1555 1555 1.33 LINK C LEU C 123 N MSE C 124 1555 1555 1.33 LINK C MSE C 124 N ARG C 125 1555 1555 1.33 LINK C LYS C 138 N MSE C 139 1555 1555 1.33 LINK C MSE C 139 N GLN C 140 1555 1555 1.33 LINK C GLU D 67 N MSE D 68 1555 1555 1.34 LINK C MSE D 68 N LEU D 69 1555 1555 1.34 LINK C ARG D 73 N MSE D 74 1555 1555 1.33 LINK C MSE D 74 N ALA D 75 1555 1555 1.33 LINK C LEU D 123 N MSE D 124 1555 1555 1.33 LINK C MSE D 124 N ARG D 125 1555 1555 1.33 LINK C LYS D 138 N MSE D 139 1555 1555 1.33 LINK C MSE D 139 N GLN D 140 1555 1555 1.33
CISPEP 1 THR A 151 PRO A 152 0 -3.83 CISPEP 2 THR B 151 PRO B 152 0 -13.02 CISPEP 3 THR C 151 PRO C 152 0 -8.11 CISPEP 4 THR D 151 PRO D 152 0 -6.37
CRYST1 54.469 88.531 84.295 90.00 106.87 90.00 P 1 21 1 8
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 0.018359 0.000000 0.005568 0.00000
SCALE2 0.000000 0.011295 0.000000 0.00000
SCALE3 0.000000 0.000000 0.012397 0.00000