10 20 30 40 50 60 70 80 2ZLF - Header ----|----|----|----|----|----|----|----|----|----|----|----|----|----|----|----| Asymmetric UnitHEADER OXIDOREDUCTASE 09-APR-08 2ZLF
TITLE THE STRUCTURAL BASIS FOR PEPTIDOMIMETIC INHIBITION OF TITLE 2 EUKARYOTIC RIBONUCLEOTIDE REDUCTASE
COMPND MOL_ID: 1; COMPND 2 MOLECULE: RIBONUCLEOSIDE-DIPHOSPHATE REDUCTASE LARGE CHAIN COMPND 3 1; COMPND 4 CHAIN: A; COMPND 5 SYNONYM: RIBONUCLEOTIDE REDUCTASE LARGE SUBUNIT 1, RNR1, COMPND 6 RIBONUCLEOTIDE REDUCTASE R1 SUBUNIT 1; COMPND 7 EC: 1.17.4.1; COMPND 8 ENGINEERED: YES; COMPND 9 MOL_ID: 2; COMPND 10 MOLECULE: FTLDADF; COMPND 11 CHAIN: B; COMPND 12 ENGINEERED: YES
SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE; SOURCE 3 ORGANISM_COMMON: BAKER'S YEAST; SOURCE 4 ORGANISM_TAXID: 4932; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PWJ751-3; SOURCE 10 MOL_ID: 2; SOURCE 11 SYNTHETIC: YES
KEYWDS PEPTIDOMIMETIC INHIBITION EUKARYOTIC RIBONUCLEOTIDE KEYWDS 2 REDUCTASE, ALLOSTERIC ENZYME, ATP-BINDING, CYTOPLASM, DNA KEYWDS 3 REPLICATION, NUCLEOTIDE-BINDING, OXIDOREDUCTASE, KEYWDS 4 PHOSPHOPROTEIN
EXPDTA X-RAY DIFFRACTION
AUTHOR H.XU,J.W.FAIRMAN,S.R.WIJERATHNA,J.LAMACCHIA,N.R.KREISCHER, AUTHOR 2 E.HELMBRECHT,B.S.COOPERMAN,C.DEALWIS
REVDAT 2 24-FEB-09 2ZLF 1 VERSN REVDAT 1 19-AUG-08 2ZLF 0
JRNL AUTH H.XU,J.W.FAIRMAN,S.R.WIJERATHNA,N.R.KREISCHER, JRNL AUTH 2 J.LAMACCHIA,E.HELMBRECHT,B.S.COOPERMAN,C.DEALWIS JRNL TITL THE STRUCTURAL BASIS FOR PEPTIDOMIMETIC INHIBITION JRNL TITL 2 OF EUKARYOTIC RIBONUCLEOTIDE REDUCTASE: A JRNL TITL 3 CONFORMATIONALLY FLEXIBLE PHARMACOPHORE JRNL REF J.MED.CHEM. V. 51 4653 2008 JRNL REFN ISSN 0022-2623 JRNL PMID 18610997 JRNL DOI 10.1021/JM800350U
REMARK 1
REMARK 2 REMARK 2 RESOLUTION. 2.59 ANGSTROMS.
REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0007 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.59 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 49.75 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 96.0 REMARK 3 NUMBER OF REFLECTIONS : 23611 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.196 REMARK 3 R VALUE (WORKING SET) : 0.192 REMARK 3 FREE R VALUE : 0.251 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1262 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.59 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.66 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1388 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 77.78 REMARK 3 BIN R VALUE (WORKING SET) : 0.2530 REMARK 3 BIN FREE R VALUE SET COUNT : 79 REMARK 3 BIN FREE R VALUE : 0.3720 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5354 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 72 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 36.94 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -3.11000 REMARK 3 B22 (A**2) : -2.67000 REMARK 3 B33 (A**2) : 5.78000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.868 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.322 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): NULL REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): NULL REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.953 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.920 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 5477 ; 0.009 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 7415 ; 1.459 ; 1.942 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 667 ; 6.494 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 256 ;36.557 ;24.062 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 954 ;19.236 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 33 ;19.282 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 808 ; 0.100 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4157 ; 0.005 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 2920 ; 0.251 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 3779 ; 0.334 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 208 ; 0.144 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 50 ; 0.243 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 7 ; 0.189 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 3336 ; 3.266 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 5387 ; 4.623 ; 2.000 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2141 ; 4.916 ; 3.000 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 2028 ; 6.577 ; 4.500 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE REMARK 3 RIDING POSITIONS
REMARK 4 REMARK 4 2ZLF COMPLIES WITH FORMAT V. 3.15, 01-DEC-08
REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 10-APR-08. REMARK 100 THE RCSB ID CODE IS RCSB028119.
REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-MAR-07 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 14-BM-C REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.90020 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 24929 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.590 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.5 REMARK 200 DATA REDUNDANCY : 6.600 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.08100 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 21.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.59 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.66 REMARK 200 COMPLETENESS FOR SHELL (%) : 82.4 REMARK 200 DATA REDUNDANCY IN SHELL : 5.80 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.45900 REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: CCP4 REMARK 200 STARTING MODEL: PDB ENTRY 2CVX REMARK 200 REMARK 200 REMARK: NULL
REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 38.71 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.01 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100MM HEPES, 20-25% PEG 3350, 0.2M REMARK 280 NACL, PH 7.5, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 298K
REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 53.97400 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 58.49950 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 53.97400 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 58.49950 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL
REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA.
REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4810 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 48760 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -31.1 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 116.99900 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000
REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 TYR A 2 REMARK 465 VAL A 3 REMARK 465 TYR A 4 REMARK 465 LYS A 5 REMARK 465 ARG A 6 REMARK 465 ASP A 7 REMARK 465 GLY A 8 REMARK 465 ARG A 9 REMARK 465 LYS A 10 REMARK 465 GLU A 11 REMARK 465 PRO A 12 REMARK 465 VAL A 13 REMARK 465 GLN A 14 REMARK 465 PHE A 15 REMARK 465 ASP A 16 REMARK 465 LYS A 17 REMARK 465 ILE A 18 REMARK 465 THR A 19 REMARK 465 ALA A 20 REMARK 465 ARG A 21 REMARK 465 ILE A 22 REMARK 465 SER A 23 REMARK 465 ARG A 24 REMARK 465 LEU A 25 REMARK 465 CYS A 26 REMARK 465 TYR A 27 REMARK 465 GLY A 28 REMARK 465 LEU A 29 REMARK 465 ASP A 30 REMARK 465 PRO A 31 REMARK 465 LYS A 32 REMARK 465 HIS A 33 REMARK 465 ILE A 34 REMARK 465 ASP A 35 REMARK 465 ALA A 36 REMARK 465 VAL A 37 REMARK 465 LYS A 38 REMARK 465 VAL A 39 REMARK 465 THR A 40 REMARK 465 GLN A 41 REMARK 465 ARG A 42 REMARK 465 ILE A 43 REMARK 465 ILE A 44 REMARK 465 SER A 45 REMARK 465 GLY A 46 REMARK 465 VAL A 47 REMARK 465 TYR A 48 REMARK 465 GLU A 49 REMARK 465 GLY A 50 REMARK 465 VAL A 51 REMARK 465 THR A 52 REMARK 465 THR A 53 REMARK 465 ILE A 54 REMARK 465 GLU A 55 REMARK 465 LEU A 56 REMARK 465 ASP A 57 REMARK 465 ASN A 58 REMARK 465 LEU A 59 REMARK 465 ALA A 60 REMARK 465 ALA A 61 REMARK 465 GLU A 62 REMARK 465 THR A 63 REMARK 465 CYS A 64 REMARK 465 ALA A 65 REMARK 465 TYR A 66 REMARK 465 MET A 67 REMARK 465 THR A 68 REMARK 465 THR A 69 REMARK 465 VAL A 70 REMARK 465 HIS A 71 REMARK 465 PRO A 72 REMARK 465 ASP A 73 REMARK 465 TYR A 74 REMARK 465 ALA A 75 REMARK 465 ARG A 631 REMARK 465 ARG A 632 REMARK 465 VAL A 633 REMARK 465 LEU A 634 REMARK 465 SER A 635 REMARK 465 GLY A 636 REMARK 465 GLU A 637 REMARK 465 PHE A 638 REMARK 465 ALA A 747 REMARK 465 ALA A 748 REMARK 465 SER A 749 REMARK 465 ALA A 750 REMARK 465 ALA A 751 REMARK 465 ILE A 752 REMARK 465 GLN A 753 REMARK 465 PHE A 754 REMARK 465 THR A 755 REMARK 465 ILE A 756 REMARK 465 ASP A 757 REMARK 465 GLN A 758 REMARK 465 LYS A 759 REMARK 465 ILE A 760 REMARK 465 ALA A 761 REMARK 465 ASP A 762 REMARK 465 GLN A 763 REMARK 465 ALA A 764 REMARK 465 THR A 765 REMARK 465 GLU A 766 REMARK 465 ASN A 767 REMARK 465 VAL A 768 REMARK 465 ALA A 769 REMARK 465 ASP A 770 REMARK 465 ILE A 771 REMARK 465 SER A 772 REMARK 465 ASN A 773 REMARK 465 LEU A 774 REMARK 465 LYS A 775 REMARK 465 ARG A 776 REMARK 465 PRO A 777 REMARK 465 SER A 778 REMARK 465 TYR A 779 REMARK 465 MET A 780 REMARK 465 PRO A 781 REMARK 465 SER A 782 REMARK 465 SER A 783 REMARK 465 ALA A 784 REMARK 465 SER A 785 REMARK 465 TYR A 786 REMARK 465 ALA A 787 REMARK 465 ALA A 788 REMARK 465 SER A 789 REMARK 465 ASP A 790 REMARK 465 PHE A 791 REMARK 465 VAL A 792 REMARK 465 PRO A 793 REMARK 465 ALA A 794 REMARK 465 ALA A 795 REMARK 465 VAL A 796 REMARK 465 THR A 797 REMARK 465 ALA A 798 REMARK 465 ASN A 799 REMARK 465 ALA A 800 REMARK 465 THR A 801 REMARK 465 ILE A 802 REMARK 465 PRO A 803 REMARK 465 SER A 804 REMARK 465 LEU A 805 REMARK 465 ASP A 806 REMARK 465 SER A 807 REMARK 465 SER A 808 REMARK 465 SER A 809 REMARK 465 GLU A 810 REMARK 465 ALA A 811 REMARK 465 SER A 812 REMARK 465 ARG A 813 REMARK 465 GLU A 814 REMARK 465 ALA A 815 REMARK 465 SER A 816 REMARK 465 PRO A 817 REMARK 465 ALA A 818 REMARK 465 PRO A 819 REMARK 465 THR A 820 REMARK 465 GLY A 821 REMARK 465 SER A 822 REMARK 465 HIS A 823 REMARK 465 SER A 824 REMARK 465 LEU A 825 REMARK 465 THR A 826 REMARK 465 LYS A 827 REMARK 465 GLY A 828 REMARK 465 MET A 829 REMARK 465 ALA A 830 REMARK 465 GLU A 831 REMARK 465 LEU A 832 REMARK 465 ASN A 833 REMARK 465 VAL A 834 REMARK 465 GLN A 835 REMARK 465 GLU A 836 REMARK 465 SER A 837 REMARK 465 LYS A 838 REMARK 465 VAL A 839 REMARK 465 GLU A 840 REMARK 465 VAL A 841 REMARK 465 PRO A 842 REMARK 465 GLU A 843 REMARK 465 VAL A 844 REMARK 465 PRO A 845 REMARK 465 ALA A 846 REMARK 465 PRO A 847 REMARK 465 THR A 848 REMARK 465 LYS A 849 REMARK 465 ASN A 850 REMARK 465 GLU A 851 REMARK 465 GLU A 852 REMARK 465 LYS A 853 REMARK 465 ALA A 854 REMARK 465 ALA A 855 REMARK 465 PRO A 856 REMARK 465 ILE A 857 REMARK 465 VAL A 858 REMARK 465 ASP A 859 REMARK 465 ASP A 860 REMARK 465 GLU A 861 REMARK 465 GLU A 862 REMARK 465 THR A 863 REMARK 465 GLU A 864 REMARK 465 PHE A 865 REMARK 465 ASP A 866 REMARK 465 ILE A 867 REMARK 465 TYR A 868 REMARK 465 ASN A 869 REMARK 465 SER A 870 REMARK 465 LYS A 871 REMARK 465 VAL A 872 REMARK 465 ILE A 873 REMARK 465 ALA A 874 REMARK 465 CYS A 875 REMARK 465 ALA A 876 REMARK 465 ILE A 877 REMARK 465 ASP A 878 REMARK 465 ASN A 879 REMARK 465 PRO A 880 REMARK 465 GLU A 881 REMARK 465 ALA A 882 REMARK 465 CYS A 883 REMARK 465 GLU A 884 REMARK 465 MET A 885 REMARK 465 CYS A 886 REMARK 465 SER A 887 REMARK 465 GLY A 888
REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 127 16.38 -153.31 REMARK 500 ASN A 160 61.04 38.07 REMARK 500 LYS A 196 37.49 74.42 REMARK 500 THR A 244 -161.99 -77.50 REMARK 500 ALA A 245 -169.13 -68.18 REMARK 500 GLN A 288 -146.33 -89.23 REMARK 500 LYS A 292 33.61 171.27 REMARK 500 ARG A 293 53.82 -114.30 REMARK 500 PRO A 294 -121.07 -80.74 REMARK 500 HIS A 318 -159.83 -134.50 REMARK 500 GLU A 321 21.26 -70.83 REMARK 500 ALA A 325 84.27 -172.89 REMARK 500 ALA A 356 72.14 -156.16 REMARK 500 GLU A 377 5.60 -65.97 REMARK 500 SER A 425 -149.80 -105.21 REMARK 500 ASN A 426 -168.03 -119.08 REMARK 500 SER A 457 -117.06 -73.23 REMARK 500 GLU A 458 76.93 -107.38 REMARK 500 ASP A 459 -160.00 -9.05 REMARK 500 THR A 602 -18.10 -140.91 REMARK 500 ALA A 604 71.94 -156.67 REMARK 500 THR A 608 19.06 54.70 REMARK 500 ALA A 609 -70.15 -29.81 REMARK 500 CYS A 620 -115.38 37.24 REMARK 500 TYR A 629 109.77 176.81 REMARK 500 ASN A 642 110.71 -32.79 REMARK 500 ASP A 651 -0.77 -58.94 REMARK 500 ASP A 656 -123.20 -131.87 REMARK 500 ASN A 667 -7.72 -49.65 REMARK 500 GLN A 708 -121.19 -108.25 REMARK 500 ARG A 717 -88.92 -59.79 REMARK 500 TYR A 741 -121.51 -95.52 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 GLU A 458 ASP A 459 -144.37 REMARK 500 REMARK 500 REMARK: NULL
REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2ZLG RELATED DB: PDB
DBREF 2ZLF A 1 888 UNP P21524 RIR1_YEAST 1 888 DBREF 2ZLF B 1 7 PDB 2ZLF 2ZLF 1 7
SEQRES 1 A 888 MET TYR VAL TYR LYS ARG ASP GLY ARG LYS GLU PRO VAL SEQRES 2 A 888 GLN PHE ASP LYS ILE THR ALA ARG ILE SER ARG LEU CYS SEQRES 3 A 888 TYR GLY LEU ASP PRO LYS HIS ILE ASP ALA VAL LYS VAL SEQRES 4 A 888 THR GLN ARG ILE ILE SER GLY VAL TYR GLU GLY VAL THR SEQRES 5 A 888 THR ILE GLU LEU ASP ASN LEU ALA ALA GLU THR CYS ALA SEQRES 6 A 888 TYR MET THR THR VAL HIS PRO ASP TYR ALA THR LEU ALA SEQRES 7 A 888 ALA ARG ILE ALA ILE SER ASN LEU HIS LYS GLN THR THR SEQRES 8 A 888 LYS GLN PHE SER LYS VAL VAL GLU ASP LEU TYR ARG TYR SEQRES 9 A 888 VAL ASN ALA ALA THR GLY LYS PRO ALA PRO MET ILE SER SEQRES 10 A 888 ASP ASP VAL TYR ASN ILE VAL MET GLU ASN LYS ASP LYS SEQRES 11 A 888 LEU ASN SER ALA ILE VAL TYR ASP ARG ASP PHE GLN TYR SEQRES 12 A 888 SER TYR PHE GLY PHE LYS THR LEU GLU ARG SER TYR LEU SEQRES 13 A 888 LEU ARG ILE ASN GLY GLN VAL ALA GLU ARG PRO GLN HIS SEQRES 14 A 888 LEU ILE MET ARG VAL ALA LEU GLY ILE HIS GLY ARG ASP SEQRES 15 A 888 ILE GLU ALA ALA LEU GLU THR TYR ASN LEU MET SER LEU SEQRES 16 A 888 LYS TYR PHE THR HIS ALA SER PRO THR LEU PHE ASN ALA SEQRES 17 A 888 GLY THR PRO LYS PRO GLN MET SER SER CYS PHE LEU VAL SEQRES 18 A 888 ALA MET LYS GLU ASP SER ILE GLU GLY ILE TYR ASP THR SEQRES 19 A 888 LEU LYS GLU CYS ALA LEU ILE SER LYS THR ALA GLY GLY SEQRES 20 A 888 ILE GLY LEU HIS ILE HIS ASN ILE ARG SER THR GLY SER SEQRES 21 A 888 TYR ILE ALA GLY THR ASN GLY THR SER ASN GLY LEU ILE SEQRES 22 A 888 PRO MET ILE ARG VAL PHE ASN ASN THR ALA ARG TYR VAL SEQRES 23 A 888 ASP GLN GLY GLY ASN LYS ARG PRO GLY ALA PHE ALA LEU SEQRES 24 A 888 TYR LEU GLU PRO TRP HIS ALA ASP ILE PHE ASP PHE ILE SEQRES 25 A 888 ASP ILE ARG LYS ASN HIS GLY LYS GLU GLU ILE ARG ALA SEQRES 26 A 888 ARG ASP LEU PHE PRO ALA LEU TRP ILE PRO ASP LEU PHE SEQRES 27 A 888 MET LYS ARG VAL GLU GLU ASN GLY THR TRP THR LEU PHE SEQRES 28 A 888 SER PRO THR SER ALA PRO GLY LEU SER ASP CYS TYR GLY SEQRES 29 A 888 ASP GLU PHE GLU ALA LEU TYR THR ARG TYR GLU LYS GLU SEQRES 30 A 888 GLY ARG GLY LYS THR ILE LYS ALA GLN LYS LEU TRP TYR SEQRES 31 A 888 SER ILE LEU GLU ALA GLN THR GLU THR GLY THR PRO PHE SEQRES 32 A 888 VAL VAL TYR LYS ASP ALA CYS ASN ARG LYS SER ASN GLN SEQRES 33 A 888 LYS ASN LEU GLY VAL ILE LYS SER SER ASN LEU CYS CYS SEQRES 34 A 888 GLU ILE VAL GLU TYR SER ALA PRO ASP GLU THR ALA VAL SEQRES 35 A 888 CYS ASN LEU ALA SER VAL ALA LEU PRO ALA PHE ILE GLU SEQRES 36 A 888 THR SER GLU ASP GLY LYS THR SER THR TYR ASN PHE LYS SEQRES 37 A 888 LYS LEU HIS GLU ILE ALA LYS VAL VAL THR ARG ASN LEU SEQRES 38 A 888 ASN ARG VAL ILE ASP ARG ASN TYR TYR PRO VAL GLU GLU SEQRES 39 A 888 ALA ARG LYS SER ASN MET ARG HIS ARG PRO ILE ALA LEU SEQRES 40 A 888 GLY VAL GLN GLY LEU ALA ASP THR PHE MET LEU LEU ARG SEQRES 41 A 888 LEU PRO PHE ASP SER GLU GLU ALA ARG LEU LEU ASN ILE SEQRES 42 A 888 GLN ILE PHE GLU THR ILE TYR HIS ALA SER MET GLU ALA SEQRES 43 A 888 SER CYS GLU LEU ALA GLN LYS ASP GLY PRO TYR GLU THR SEQRES 44 A 888 PHE GLN GLY SER PRO ALA SER GLN GLY ILE LEU GLN PHE SEQRES 45 A 888 ASP MET TRP ASP GLN LYS PRO TYR GLY MET TRP ASP TRP SEQRES 46 A 888 ASP THR LEU ARG LYS ASP ILE MET LYS HIS GLY VAL ARG SEQRES 47 A 888 ASN SER LEU THR MET ALA PRO MET PRO THR ALA SER THR SEQRES 48 A 888 SER GLN ILE LEU GLY TYR ASN GLU CYS PHE GLU PRO VAL SEQRES 49 A 888 THR SER ASN MET TYR SER ARG ARG VAL LEU SER GLY GLU SEQRES 50 A 888 PHE GLN VAL VAL ASN PRO TYR LEU LEU ARG ASP LEU VAL SEQRES 51 A 888 ASP LEU GLY ILE TRP ASP GLU GLY MET LYS GLN TYR LEU SEQRES 52 A 888 ILE THR GLN ASN GLY SER ILE GLN GLY LEU PRO ASN VAL SEQRES 53 A 888 PRO GLN GLU LEU LYS ASP LEU TYR LYS THR VAL TRP GLU SEQRES 54 A 888 ILE SER GLN LYS THR ILE ILE ASN MET ALA ALA ASP ARG SEQRES 55 A 888 SER VAL TYR ILE ASP GLN SER HIS SER LEU ASN LEU PHE SEQRES 56 A 888 LEU ARG ALA PRO THR MET GLY LYS LEU THR SER MET HIS SEQRES 57 A 888 PHE TYR GLY TRP LYS LYS GLY LEU LYS THR GLY MET TYR SEQRES 58 A 888 TYR LEU ARG THR GLN ALA ALA SER ALA ALA ILE GLN PHE SEQRES 59 A 888 THR ILE ASP GLN LYS ILE ALA ASP GLN ALA THR GLU ASN SEQRES 60 A 888 VAL ALA ASP ILE SER ASN LEU LYS ARG PRO SER TYR MET SEQRES 61 A 888 PRO SER SER ALA SER TYR ALA ALA SER ASP PHE VAL PRO SEQRES 62 A 888 ALA ALA VAL THR ALA ASN ALA THR ILE PRO SER LEU ASP SEQRES 63 A 888 SER SER SER GLU ALA SER ARG GLU ALA SER PRO ALA PRO SEQRES 64 A 888 THR GLY SER HIS SER LEU THR LYS GLY MET ALA GLU LEU SEQRES 65 A 888 ASN VAL GLN GLU SER LYS VAL GLU VAL PRO GLU VAL PRO SEQRES 66 A 888 ALA PRO THR LYS ASN GLU GLU LYS ALA ALA PRO ILE VAL SEQRES 67 A 888 ASP ASP GLU GLU THR GLU PHE ASP ILE TYR ASN SER LYS SEQRES 68 A 888 VAL ILE ALA CYS ALA ILE ASP ASN PRO GLU ALA CYS GLU SEQRES 69 A 888 MET CYS SER GLY SEQRES 1 B 7 PHE THR LEU ASP ALA ASP PHE
FORMUL 3 HOH *72(H2 O)
HELIX 1 1 LEU A 77 LYS A 88 1 12 HELIX 2 2 GLN A 93 TYR A 104 1 12 HELIX 3 3 SER A 117 GLU A 126 1 10 HELIX 4 4 ASN A 127 SER A 133 1 7 HELIX 5 5 VAL A 136 TYR A 143 5 8 HELIX 6 6 SER A 144 TYR A 155 1 12 HELIX 7 7 ARG A 166 GLY A 180 1 15 HELIX 8 8 ASP A 182 LEU A 195 1 14 HELIX 9 9 ALA A 201 ALA A 208 1 8 HELIX 10 10 SER A 227 THR A 244 1 18 HELIX 11 11 GLY A 271 VAL A 286 1 16 HELIX 12 12 ASP A 307 ILE A 312 1 6 HELIX 13 13 PRO A 335 GLU A 344 1 10 HELIX 14 14 GLY A 358 CYS A 362 5 5 HELIX 15 15 TYR A 363 GLU A 377 1 15 HELIX 16 16 ALA A 385 GLY A 400 1 16 HELIX 17 17 LYS A 407 LYS A 413 1 7 HELIX 18 18 ASN A 466 ASN A 488 1 23 HELIX 19 19 VAL A 492 ARG A 503 1 12 HELIX 20 20 GLY A 511 LEU A 519 1 9 HELIX 21 21 SER A 525 GLY A 555 1 31 HELIX 22 22 SER A 563 GLY A 568 5 6 HELIX 23 23 LEU A 570 TRP A 575 1 6 HELIX 24 24 ASP A 584 GLY A 596 1 13 HELIX 25 25 THR A 608 GLY A 616 1 9 HELIX 26 26 ASN A 642 ASP A 651 1 10 HELIX 27 27 MET A 659 GLN A 666 1 8 HELIX 28 28 PRO A 677 TYR A 684 1 8 HELIX 29 29 SER A 691 VAL A 704 1 14 HELIX 30 30 THR A 720 LYS A 734 1 15
SHEET 1 A 2 ARG A 158 ILE A 159 0 SHEET 2 A 2 GLN A 162 VAL A 163 -1 O GLN A 162 N ILE A 159 SHEET 1 B 3 PHE A 198 HIS A 200 0 SHEET 2 B 3 LEU A 445 ALA A 449 -1 O SER A 447 N THR A 199 SHEET 3 B 3 ALA A 506 GLN A 510 1 O GLY A 508 N VAL A 448 SHEET 1 C 7 ALA A 441 CYS A 443 0 SHEET 2 C 7 CYS A 218 ALA A 222 -1 N LEU A 220 O ALA A 441 SHEET 3 C 7 GLY A 247 HIS A 251 1 O GLY A 249 N VAL A 221 SHEET 4 C 7 PHE A 297 LEU A 301 1 O ALA A 298 N LEU A 250 SHEET 5 C 7 LEU A 328 ILE A 334 1 O PHE A 329 N LEU A 299 SHEET 6 C 7 PHE A 403 TYR A 406 1 O PHE A 403 N LEU A 332 SHEET 7 C 7 THR A 738 MET A 740 -1 O MET A 740 N VAL A 404 SHEET 1 D 2 THR A 347 LEU A 350 0 SHEET 2 D 2 LYS A 381 LYS A 384 -1 O ILE A 383 N TRP A 348 SHEET 1 E 2 ILE A 454 GLU A 455 0 SHEET 2 E 2 THR A 464 TYR A 465 -1 O THR A 464 N GLU A 455 SHEET 1 F 2 LEU A 714 LEU A 716 0 SHEET 2 F 2 LEU A 743 THR A 745 1 O ARG A 744 N LEU A 714
CISPEP 1 THR A 401 PRO A 402 0 2.40
CRYST1 107.948 116.999 63.873 90.00 90.00 90.00 P 21 21 2 4
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 0.009264 0.000000 0.000000 0.00000
SCALE2 0.000000 0.008547 0.000000 0.00000
SCALE3 0.000000 0.000000 0.015656 0.00000