10 20 30 40 50 60 70 80 2ZLD - Header ----|----|----|----|----|----|----|----|----|----|----|----|----|----|----|----| Asymmetric UnitHEADER MEMBRANE PROTEIN 09-APR-08 2ZLD
TITLE STRUCTURE OF OMPF CO-CRYSTALLIZED WITH T83
COMPND MOL_ID: 1; COMPND 2 MOLECULE: OUTER MEMBRANE PROTEIN F; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: PORIN OMPF, OUTER MEMBRANE PROTEIN 1A, OUTER COMPND 5 MEMBRANE PROTEIN IA, OUTER MEMBRANE PROTEIN B; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: COLICIN-E3; COMPND 9 CHAIN: C, D; COMPND 10 FRAGMENT: T83 (RESIDUES 1-83); COMPND 11 SYNONYM: COLICIN-E3 A CHAIN, RIBONUCLEASE; COMPND 12 EC: 3.1.-.-; COMPND 13 ENGINEERED: YES
SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 3 ORGANISM_TAXID: 562; SOURCE 4 GENE: OMPF, CMLB, COA, CRY, TOLF, B0929, JW0912; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 MOL_ID: 2; SOURCE 8 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 9 ORGANISM_TAXID: 562; SOURCE 10 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 11 EXPRESSION_SYSTEM_TAXID: 562
KEYWDS BTUB, COLICIN E3, RIBOSOMAL RNAASE, DISORDERED T83, TOL KEYWDS 2 SYSTEM, ION TRANSPORT, MEMBRANE, OUTER MEMBRANE, PHAGE KEYWDS 3 RECOGNITION, PORIN, TRANSMEMBRANE, TRANSPORT, MEMBRANE KEYWDS 4 PROTEIN
EXPDTA X-RAY DIFFRACTION
AUTHOR W.A.CRAMER,S.D.ZAKHAROV,E.YAMASHITA
REVDAT 2 24-FEB-09 2ZLD 1 VERSN REVDAT 1 29-JUL-08 2ZLD 0
JRNL AUTH E.YAMASHITA,M.V.ZHALNINA,S.D.ZAKHAROV,O.SHARMA, JRNL AUTH 2 W.A.CRAMER JRNL TITL CRYSTAL STRUCTURES OF THE OMPF PORIN: FUNCTION IN JRNL TITL 2 A COLICIN TRANSLOCON. JRNL REF EMBO J. V. 27 2171 2008 JRNL REFN ISSN 0261-4189 JRNL PMID 18636093 JRNL DOI 10.1038/EMBOJ.2008.137
REMARK 1
REMARK 2 REMARK 2 RESOLUTION. 3.00 ANGSTROMS.
REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 101.02 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 16925 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.267 REMARK 3 R VALUE (WORKING SET) : 0.266 REMARK 3 FREE R VALUE : 0.294 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 896 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 3.00 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 3.08 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1259 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.00 REMARK 3 BIN R VALUE (WORKING SET) : 0.3220 REMARK 3 BIN FREE R VALUE SET COUNT : 63 REMARK 3 BIN FREE R VALUE : 0.3450 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5294 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 0 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 48.67 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -5.38000 REMARK 3 B22 (A**2) : -5.38000 REMARK 3 B33 (A**2) : 8.07000 REMARK 3 B12 (A**2) : -2.69000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.502 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.438 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 23.547 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.868 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.857 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 5402 ; 0.007 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 7296 ; 0.976 ; 1.932 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 686 ; 5.454 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 290 ;38.323 ;24.966 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 798 ;15.309 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 22 ; 5.907 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 734 ; 0.066 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4340 ; 0.002 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 2082 ; 0.183 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 3635 ; 0.301 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 220 ; 0.127 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 115 ; 0.148 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 16 ; 0.157 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 3427 ; 0.400 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 5270 ; 0.729 ; 2.000 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2292 ; 0.471 ; 3.000 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 2026 ; 0.748 ; 4.500 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : 1 REMARK 3 REMARK 3 NCS GROUP NUMBER : 1 REMARK 3 CHAIN NAMES : A B REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 1 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 1 A 1 A 340 1 REMARK 3 1 B 1 B 340 1 REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 TIGHT POSITIONAL 1 A (A): 2619 ; 0.01 ; 0.05 REMARK 3 TIGHT THERMAL 1 A (A**2): 2619 ; 0.05 ; 0.50 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE REMARK 3 RIDING POSITIONS
REMARK 4 REMARK 4 2ZLD COMPLIES WITH FORMAT V. 3.15, 01-DEC-08
REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 16-APR-08. REMARK 100 THE RCSB ID CODE IS RCSB028117.
REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 25-NOV-07 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97935 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 17885 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.000 REMARK 200 RESOLUTION RANGE LOW (A) : NULL REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 8.300 REMARK 200 R MERGE (I) : 0.07600 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 2OMF REMARK 200 REMARK 200 REMARK: NULL
REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 58.82 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.99 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: NULL
REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 63 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/2 REMARK 290 6555 X-Y,X,Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 57.16550 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 57.16550 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 57.16550 REMARK 290 REMARK 290 REMARK: NULL
REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA.
REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: HEXAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: HEXAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 8870 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 41130 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -55.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 350 BIOMT2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 350 BIOMT2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: HEXAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: HEXAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 8890 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 41090 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -55.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 -0.866025 0.000000 58.43350 REMARK 350 BIOMT2 2 0.866025 -0.500000 0.000000 101.20979 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -0.500000 0.866025 0.000000 -58.43350 REMARK 350 BIOMT2 3 -0.866025 -0.500000 0.000000 101.20979 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1230 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 32100 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -16.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000
REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ASN A 27 REMARK 465 ASN B 27
REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 5 78.29 -152.13 REMARK 500 ALA A 84 94.05 -160.34 REMARK 500 ALA A 91 -108.52 27.41 REMARK 500 ALA A 108 -70.23 -76.28 REMARK 500 GLU A 117 -59.87 -128.17 REMARK 500 PHE A 118 -142.82 -88.70 REMARK 500 PHE A 128 -105.55 59.47 REMARK 500 PHE A 144 76.71 40.58 REMARK 500 GLU A 183 70.40 33.20 REMARK 500 ILE A 286 -62.10 -142.12 REMARK 500 ASN A 304 -167.19 -165.77 REMARK 500 ASN B 5 78.09 -150.98 REMARK 500 ALA B 84 93.99 -161.89 REMARK 500 ALA B 91 -109.74 27.16 REMARK 500 ALA B 108 -73.11 -74.95 REMARK 500 GLU B 117 -60.38 -131.06 REMARK 500 PHE B 118 -141.79 -87.24 REMARK 500 PHE B 128 -105.52 58.93 REMARK 500 PHE B 144 77.13 40.16 REMARK 500 GLU B 183 69.71 33.33 REMARK 500 ILE B 286 -61.86 -140.99 REMARK 500 ASN B 293 103.41 -160.03 REMARK 500 ASN B 304 -166.28 -163.80 REMARK 500 REMARK 500 REMARK: NULL
REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2ZFG RELATED DB: PDB REMARK 900 THE SAME PROTEIN
REMARK 999 REMARK 999 SEQUENCE REMARK 999 THE AUTHOR CO-CRYSTALLIZED THE OMPF WITH THE N-TERMINAL REMARK 999 TRANSLOCATION DOMAIN OF COLICIN E3 (T83). THE ELECTRON DENSITY REMARK 999 RESEMBLED THAT OF A POLYPEPTIDE CHAIN CONSISTING AT LEAST SEVEN REMARK 999 RESIDUES. BUT THE AUTHOR COULDN'T IDENTIFY SPECIFIC REGION OF REMARK 999 T83 BECAUSE OF THE LACK OF THE ELECTRON DENSITY. THEREFORE THE REMARK 999 SEQUENCE NUMBER IN THE PEPTIDE COORDINATES IS NOT ACTUAL NUMBER. REMARK 999 THE SEQUENCE OF THE N-TERMINAL TRANSLOCATION DOMAIN OF T83 IS REMARK 999 MSGGDGRGHN TGAHSTSGNI NGGPTGLGVG GGASDGSGWS SENNPWGGGS REMARK 999 GSGIHWGGGS GHGNGGGNGN SGGGSGTGGN LSA. THIS SEQUENCE IS DESCRIBED REMARK 999 AS THE RESIDUES 1-83 IN THE UNIPROT P00646, CEA3_ECOLX.
DBREF 2ZLD A 1 340 UNP P02931 OMPF_ECOLI 23 362 DBREF 2ZLD B 1 340 UNP P02931 OMPF_ECOLI 23 362 DBREF 2ZLD C 6 12 PDB 2ZLD 2ZLD 6 12 DBREF 2ZLD D 6 12 PDB 2ZLD 2ZLD 6 12
SEQRES 1 A 340 ALA GLU ILE TYR ASN LYS ASP GLY ASN LYS VAL ASP LEU SEQRES 2 A 340 TYR GLY LYS ALA VAL GLY LEU HIS TYR PHE SER LYS GLY SEQRES 3 A 340 ASN GLY GLU ASN SER TYR GLY GLY ASN GLY ASP MET THR SEQRES 4 A 340 TYR ALA ARG LEU GLY PHE LYS GLY GLU THR GLN ILE ASN SEQRES 5 A 340 SER ASP LEU THR GLY TYR GLY GLN TRP GLU TYR ASN PHE SEQRES 6 A 340 GLN GLY ASN ASN SER GLU GLY ALA ASP ALA GLN THR GLY SEQRES 7 A 340 ASN LYS THR ARG LEU ALA PHE ALA GLY LEU LYS TYR ALA SEQRES 8 A 340 ASP VAL GLY SER PHE ASP TYR GLY ARG ASN TYR GLY VAL SEQRES 9 A 340 VAL TYR ASP ALA LEU GLY TYR THR ASP MET LEU PRO GLU SEQRES 10 A 340 PHE GLY GLY ASP THR ALA TYR SER ASP ASP PHE PHE VAL SEQRES 11 A 340 GLY ARG VAL GLY GLY VAL ALA THR TYR ARG ASN SER ASN SEQRES 12 A 340 PHE PHE GLY LEU VAL ASP GLY LEU ASN PHE ALA VAL GLN SEQRES 13 A 340 TYR LEU GLY LYS ASN GLU ARG ASP THR ALA ARG ARG SER SEQRES 14 A 340 ASN GLY ASP GLY VAL GLY GLY SER ILE SER TYR GLU TYR SEQRES 15 A 340 GLU GLY PHE GLY ILE VAL GLY ALA TYR GLY ALA ALA ASP SEQRES 16 A 340 ARG THR ASN LEU GLN GLU ALA GLN PRO LEU GLY ASN GLY SEQRES 17 A 340 LYS LYS ALA GLU GLN TRP ALA THR GLY LEU LYS TYR ASP SEQRES 18 A 340 ALA ASN ASN ILE TYR LEU ALA ALA ASN TYR GLY GLU THR SEQRES 19 A 340 ARG ASN ALA THR PRO ILE THR ASN LYS PHE THR ASN THR SEQRES 20 A 340 SER GLY PHE ALA ASN LYS THR GLN ASP VAL LEU LEU VAL SEQRES 21 A 340 ALA GLN TYR GLN PHE ASP PHE GLY LEU ARG PRO SER ILE SEQRES 22 A 340 ALA TYR THR LYS SER LYS ALA LYS ASP VAL GLU GLY ILE SEQRES 23 A 340 GLY ASP VAL ASP LEU VAL ASN TYR PHE GLU VAL GLY ALA SEQRES 24 A 340 THR TYR TYR PHE ASN LYS ASN MET SER THR TYR VAL ASP SEQRES 25 A 340 TYR ILE ILE ASN GLN ILE ASP SER ASP ASN LYS LEU GLY SEQRES 26 A 340 VAL GLY SER ASP ASP THR VAL ALA VAL GLY ILE VAL TYR SEQRES 27 A 340 GLN PHE SEQRES 1 B 340 ALA GLU ILE TYR ASN LYS ASP GLY ASN LYS VAL ASP LEU SEQRES 2 B 340 TYR GLY LYS ALA VAL GLY LEU HIS TYR PHE SER LYS GLY SEQRES 3 B 340 ASN GLY GLU ASN SER TYR GLY GLY ASN GLY ASP MET THR SEQRES 4 B 340 TYR ALA ARG LEU GLY PHE LYS GLY GLU THR GLN ILE ASN SEQRES 5 B 340 SER ASP LEU THR GLY TYR GLY GLN TRP GLU TYR ASN PHE SEQRES 6 B 340 GLN GLY ASN ASN SER GLU GLY ALA ASP ALA GLN THR GLY SEQRES 7 B 340 ASN LYS THR ARG LEU ALA PHE ALA GLY LEU LYS TYR ALA SEQRES 8 B 340 ASP VAL GLY SER PHE ASP TYR GLY ARG ASN TYR GLY VAL SEQRES 9 B 340 VAL TYR ASP ALA LEU GLY TYR THR ASP MET LEU PRO GLU SEQRES 10 B 340 PHE GLY GLY ASP THR ALA TYR SER ASP ASP PHE PHE VAL SEQRES 11 B 340 GLY ARG VAL GLY GLY VAL ALA THR TYR ARG ASN SER ASN SEQRES 12 B 340 PHE PHE GLY LEU VAL ASP GLY LEU ASN PHE ALA VAL GLN SEQRES 13 B 340 TYR LEU GLY LYS ASN GLU ARG ASP THR ALA ARG ARG SER SEQRES 14 B 340 ASN GLY ASP GLY VAL GLY GLY SER ILE SER TYR GLU TYR SEQRES 15 B 340 GLU GLY PHE GLY ILE VAL GLY ALA TYR GLY ALA ALA ASP SEQRES 16 B 340 ARG THR ASN LEU GLN GLU ALA GLN PRO LEU GLY ASN GLY SEQRES 17 B 340 LYS LYS ALA GLU GLN TRP ALA THR GLY LEU LYS TYR ASP SEQRES 18 B 340 ALA ASN ASN ILE TYR LEU ALA ALA ASN TYR GLY GLU THR SEQRES 19 B 340 ARG ASN ALA THR PRO ILE THR ASN LYS PHE THR ASN THR SEQRES 20 B 340 SER GLY PHE ALA ASN LYS THR GLN ASP VAL LEU LEU VAL SEQRES 21 B 340 ALA GLN TYR GLN PHE ASP PHE GLY LEU ARG PRO SER ILE SEQRES 22 B 340 ALA TYR THR LYS SER LYS ALA LYS ASP VAL GLU GLY ILE SEQRES 23 B 340 GLY ASP VAL ASP LEU VAL ASN TYR PHE GLU VAL GLY ALA SEQRES 24 B 340 THR TYR TYR PHE ASN LYS ASN MET SER THR TYR VAL ASP SEQRES 25 B 340 TYR ILE ILE ASN GLN ILE ASP SER ASP ASN LYS LEU GLY SEQRES 26 B 340 VAL GLY SER ASP ASP THR VAL ALA VAL GLY ILE VAL TYR SEQRES 27 B 340 GLN PHE SEQRES 1 C 7 UNK UNK UNK UNK UNK UNK UNK SEQRES 1 D 7 UNK UNK UNK UNK UNK UNK UNK
HELIX 1 1 VAL A 105 GLY A 110 1 6 HELIX 2 2 SER A 142 LEU A 147 1 6 HELIX 3 3 THR A 165 SER A 169 5 5 HELIX 4 4 THR A 197 ALA A 202 1 6 HELIX 5 5 VAL B 105 GLY B 110 1 6 HELIX 6 6 SER B 142 LEU B 147 1 6 HELIX 7 7 THR B 165 SER B 169 5 5 HELIX 8 8 THR B 197 ALA B 202 1 6
SHEET 1 A19 GLU A 2 LYS A 6 0 SHEET 2 A19 GLY A 36 ASP A 37 0 SHEET 3 A19 TYR A 40 THR A 49 0 SHEET 4 A19 LEU A 55 GLN A 66 -1 O PHE A 65 N ALA A 41 SHEET 5 A19 LYS A 80 TYR A 90 -1 O ARG A 82 N GLU A 62 SHEET 6 A19 GLY A 94 TYR A 102 -1 O PHE A 96 N LEU A 88 SHEET 7 A19 ARG A 132 ASN A 141 -1 O VAL A 133 N ASN A 101 SHEET 8 A19 LEU A 151 LEU A 158 -1 O TYR A 157 N ALA A 137 SHEET 9 A19 GLY A 173 TYR A 182 -1 O SER A 179 N ASN A 152 SHEET 10 A19 PHE A 185 ASP A 195 -1 O TYR A 191 N GLY A 176 SHEET 11 A19 LYS A 210 ALA A 222 -1 O ALA A 211 N ALA A 194 SHEET 12 A19 ILE A 225 ARG A 235 -1 O ALA A 229 N LEU A 218 SHEET 13 A19 LYS A 253 TYR A 263 -1 O ASP A 256 N GLY A 232 SHEET 14 A19 LEU A 269 VAL A 283 -1 O LYS A 277 N VAL A 257 SHEET 15 A19 GLY A 287 TYR A 302 -1 O VAL A 289 N ALA A 280 SHEET 16 A19 MET A 307 ASN A 316 -1 O TYR A 313 N VAL A 297 SHEET 17 A19 THR A 331 PHE A 340 -1 O ALA A 333 N ASP A 312 SHEET 18 A19 ASN A 9 PHE A 23 -1 N PHE A 23 O VAL A 332 SHEET 19 A19 GLY A 36 ASP A 37 -1 O GLY A 36 N TYR A 22 SHEET 1 B 2 PRO A 239 THR A 241 0 SHEET 2 B 2 SER A 248 PHE A 250 -1 O GLY A 249 N ILE A 240 SHEET 1 C19 GLU B 2 LYS B 6 0 SHEET 2 C19 GLY B 36 ASP B 37 0 SHEET 3 C19 TYR B 40 THR B 49 0 SHEET 4 C19 LEU B 55 GLN B 66 -1 O PHE B 65 N ALA B 41 SHEET 5 C19 LYS B 80 TYR B 90 -1 O LYS B 80 N ASN B 64 SHEET 6 C19 GLY B 94 TYR B 102 -1 O PHE B 96 N LEU B 88 SHEET 7 C19 ARG B 132 ASN B 141 -1 O VAL B 133 N ASN B 101 SHEET 8 C19 LEU B 151 LEU B 158 -1 O TYR B 157 N ALA B 137 SHEET 9 C19 GLY B 173 TYR B 182 -1 O SER B 179 N ASN B 152 SHEET 10 C19 PHE B 185 ASP B 195 -1 O ILE B 187 N TYR B 180 SHEET 11 C19 LYS B 210 ALA B 222 -1 O ALA B 211 N ALA B 194 SHEET 12 C19 ILE B 225 ASN B 242 -1 O ALA B 229 N LEU B 218 SHEET 13 C19 THR B 247 TYR B 263 -1 O THR B 247 N ASN B 242 SHEET 14 C19 LEU B 269 VAL B 283 -1 O LYS B 277 N VAL B 257 SHEET 15 C19 GLY B 287 TYR B 302 -1 O VAL B 289 N ALA B 280 SHEET 16 C19 MET B 307 ASN B 316 -1 O TYR B 313 N VAL B 297 SHEET 17 C19 THR B 331 PHE B 340 -1 O GLY B 335 N TYR B 310 SHEET 18 C19 ASN B 9 PHE B 23 -1 N PHE B 23 O VAL B 332 SHEET 19 C19 GLY B 36 ASP B 37 -1 O GLY B 36 N TYR B 22
CRYST1 116.867 116.867 114.331 90.00 90.00 120.00 P 63 12
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 0.008557 0.004940 0.000000 0.00000
SCALE2 0.000000 0.009880 0.000000 0.00000
SCALE3 0.000000 0.000000 0.008747 0.00000