10 20 30 40 50 60 70 80 2ZHP - Header ----|----|----|----|----|----|----|----|----|----|----|----|----|----|----|----| Asymmetric UnitHEADER ANTIBIOTIC INHIBITOR 06-FEB-08 2ZHP
TITLE CRYSTAL STRUCTURE OF BLEOMYCIN-BINDING PROTEIN FROM TITLE 2 STREPTOALLOTEICHUS HINDUSTANUS COMPLEXED WITH BLEOMYCIN TITLE 3 DERIVATIVE
COMPND MOL_ID: 1; COMPND 2 MOLECULE: BLEOMYCIN RESISTANCE PROTEIN; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: BLEOMYCIN-BINDING PROTEIN, BRP, PHLEOMYCIN COMPND 5 RESISTANCE PROTEIN; COMPND 6 ENGINEERED: YES
SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: STREPTOALLOTEICHUS HINDUSTANUS; SOURCE 3 ORGANISM_TAXID: 2017; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 6 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PRSET C
KEYWDS ANTIBIOTIC RESISTANCE, BLEOMYCIN, LIGAND BINDING PROTEIN, KEYWDS 2 ANTIBIOTIC INHIBITOR
EXPDTA X-RAY DIFFRACTION
AUTHOR H.OKUMURA,I.MIYAZAKI,S.SIMIZU,H.OSADA
REVDAT 1 17-FEB-09 2ZHP 0
JRNL AUTH I.MIYAZAKI,H.OKUMURA,S.SIMIZU,Y.TAKAHASHI,N.KANOH, JRNL AUTH 2 Y.NONOMURA,H.OSADA JRNL TITL STRUCTURE-AFFINITY RELATIONSHIP STUDY OF JRNL TITL 2 BLEOMYCINS AND SHBLE PROTEIN USING A CHEMICAL ARRAY JRNL REF TO BE PUBLISHED JRNL REFN
REMARK 1
REMARK 2 REMARK 2 RESOLUTION. 1.60 ANGSTROMS.
REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.2 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES, PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 32.11 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 1325892.690 REMARK 3 DATA CUTOFF LOW (ABS(F)) : 0.0000 REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 36616 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.187 REMARK 3 FREE R VALUE : 0.216 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1832 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.005 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 6 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.60 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.70 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.90 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 5654 REMARK 3 BIN R VALUE (WORKING SET) : 0.1920 REMARK 3 BIN FREE R VALUE : 0.2240 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 5.10 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 302 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.013 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1806 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 187 REMARK 3 SOLVENT ATOMS : 209 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 13.70 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 15.00 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.29000 REMARK 3 B22 (A**2) : 1.91000 REMARK 3 B33 (A**2) : -0.61000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.16 REMARK 3 ESD FROM SIGMAA (A) : 0.03 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.19 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.02 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.017 REMARK 3 BOND ANGLES (DEGREES) : 1.70 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 24.20 REMARK 3 IMPROPER ANGLES (DEGREES) : 1.29 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 2.010 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE (A**2) : 2.720 ; 2.000 REMARK 3 SIDE-CHAIN BOND (A**2) : 3.200 ; 2.000 REMARK 3 SIDE-CHAIN ANGLE (A**2) : 4.390 ; 2.500 REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : FLAT MODEL REMARK 3 KSOL : 0.45 REMARK 3 BSOL : 53.01 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : WATER_REP.PARAM REMARK 3 PARAMETER FILE 3 : ION.PARAM REMARK 3 PARAMETER FILE 4 : BLM.PARAM REMARK 3 PARAMETER FILE 5 : NULL REMARK 3 TOPOLOGY FILE 1 : PROTEIN.TOP REMARK 3 TOPOLOGY FILE 2 : WATER.TOP REMARK 3 TOPOLOGY FILE 3 : ION.TOP REMARK 3 TOPOLOGY FILE 4 : BLM.TOP REMARK 3 TOPOLOGY FILE 5 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: BULK SOLVENT MODEL USED
REMARK 4 REMARK 4 2ZHP COMPLIES WITH FORMAT V. 3.20, 01-DEC-08
REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 08-FEB-08. REMARK 100 THE RCSB ID CODE IS RCSB027985.
REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 13-JUL-07; 13-JUL-07 REMARK 200 TEMPERATURE (KELVIN) : 100; 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 2 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y; Y REMARK 200 RADIATION SOURCE : SPRING-8; SPRING-8 REMARK 200 BEAMLINE : BL26B2; BL26B2 REMARK 200 X-RAY GENERATOR MODEL : NULL; NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M; M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9; 1.37750, 1.37898, 1.41028 REMARK 200 MONOCHROMATOR : SI DOUBLE CRYSTAL REMARK 200 MONOCHROMATOR; SI DOUBLE REMARK 200 CRYSTAL MONOCHROMATOR REMARK 200 OPTICS : NULL; NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD; CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 225 MM CCD; REMARK 200 MARMOSAIC 225 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 36738 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.600 REMARK 200 RESOLUTION RANGE LOW (A) : 33.700 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 13.700 REMARK 200 R MERGE (I) : 0.07500 REMARK 200 R SYM (I) : 0.07500 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 47.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.60 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.66 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 13.40 REMARK 200 R MERGE FOR SHELL (I) : 0.31300 REMARK 200 R SYM FOR SHELL (I) : 0.31300 REMARK 200 <I/SIGMA(I)> FOR SHELL : 8.300 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH; MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: SHARP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL
REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 49.75 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.45 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG550MME, ZINC SULFATE, SODIUM REMARK 280 CHLORIDE, PH 6.5, VAPOR DIFFUSION, TEMPERATURE 293K
REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 19.99600 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 62.74900 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 26.93400 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 62.74900 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 19.99600 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 26.93400 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL
REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA.
REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4330 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 10830 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -80.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000
REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 GLU A 122 REMARK 465 GLN A 123 REMARK 465 ASP A 124 REMARK 465 MET B 1 REMARK 465 ASN B 85 REMARK 465 PHE B 86 REMARK 465 ARG B 87 REMARK 465 ASP B 88 REMARK 465 ALA B 89 REMARK 465 SER B 90 REMARK 465 GLY B 91 REMARK 465 PRO B 101 REMARK 465 TRP B 102 REMARK 465 GLU B 122 REMARK 465 GLN B 123 REMARK 465 ASP B 124
REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OD2 ASP B 25 CL CL B 404 1.98 REMARK 500 OE2 GLU B 21 CL CL B 404 2.11 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 OE2 GLU B 73 CL CL B 404 4565 2.08 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 24 -62.38 -94.31 REMARK 500 ASP A 44 -128.52 57.12 REMARK 500 THR B 24 -66.05 -92.97 REMARK 500 ASP B 44 -124.19 53.60 REMARK 500 REMARK 500 REMARK: NULL
REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 BY6 A 301 REMARK 610 BY6 B 401
REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CU A 302 CU REMARK 620 N RES CSSEQI ATOM REMARK 620 1 BY6 A 301 NJ REMARK 620 2 BY6 A 301 NC 118.2 REMARK 620 3 BY6 A 301 NB 100.2 80.8 REMARK 620 4 BY6 A 301 NG 155.0 76.3 102.4 REMARK 620 5 BY6 A 301 NH 88.1 153.6 97.1 78.5 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CU B 402 CU REMARK 620 N RES CSSEQI ATOM REMARK 620 1 BY6 B 401 NG REMARK 620 2 BY6 B 401 NB 105.1 REMARK 620 3 BY6 B 401 NH 80.9 100.0 REMARK 620 4 BY6 B 401 NC 78.2 81.1 158.6 REMARK 620 5 BY6 B 401 NJ 154.8 99.0 88.0 113.1 REMARK 620 N 1 2 3 4
REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE BY6 A 301 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CU A 302 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 303 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE BY6 B 401 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CU B 402 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL B 403 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL B 404
REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1BYL RELATED DB: PDB REMARK 900 WILD-TYPE SHBLE REMARK 900 RELATED ID: 1XRK RELATED DB: PDB REMARK 900 THERMOSTABLE MUTANT OF SHBLE COMPLEXED WITH BLEOMYCIN A2
DBREF 2ZHP A 1 124 UNP P17493 BLE_STRHI 1 124 DBREF 2ZHP B 1 124 UNP P17493 BLE_STRHI 1 124
SEQRES 1 A 124 MET ALA LYS LEU THR SER ALA VAL PRO VAL LEU THR ALA SEQRES 2 A 124 ARG ASP VAL ALA GLY ALA VAL GLU PHE TRP THR ASP ARG SEQRES 3 A 124 LEU GLY PHE SER ARG ASP PHE VAL GLU ASP ASP PHE ALA SEQRES 4 A 124 GLY VAL VAL ARG ASP ASP VAL THR LEU PHE ILE SER ALA SEQRES 5 A 124 VAL GLN ASP GLN VAL VAL PRO ASP ASN THR LEU ALA TRP SEQRES 6 A 124 VAL TRP VAL ARG GLY LEU ASP GLU LEU TYR ALA GLU TRP SEQRES 7 A 124 SER GLU VAL VAL SER THR ASN PHE ARG ASP ALA SER GLY SEQRES 8 A 124 PRO ALA MET THR GLU ILE GLY GLU GLN PRO TRP GLY ARG SEQRES 9 A 124 GLU PHE ALA LEU ARG ASP PRO ALA GLY ASN CYS VAL HIS SEQRES 10 A 124 PHE VAL ALA GLU GLU GLN ASP SEQRES 1 B 124 MET ALA LYS LEU THR SER ALA VAL PRO VAL LEU THR ALA SEQRES 2 B 124 ARG ASP VAL ALA GLY ALA VAL GLU PHE TRP THR ASP ARG SEQRES 3 B 124 LEU GLY PHE SER ARG ASP PHE VAL GLU ASP ASP PHE ALA SEQRES 4 B 124 GLY VAL VAL ARG ASP ASP VAL THR LEU PHE ILE SER ALA SEQRES 5 B 124 VAL GLN ASP GLN VAL VAL PRO ASP ASN THR LEU ALA TRP SEQRES 6 B 124 VAL TRP VAL ARG GLY LEU ASP GLU LEU TYR ALA GLU TRP SEQRES 7 B 124 SER GLU VAL VAL SER THR ASN PHE ARG ASP ALA SER GLY SEQRES 8 B 124 PRO ALA MET THR GLU ILE GLY GLU GLN PRO TRP GLY ARG SEQRES 9 B 124 GLU PHE ALA LEU ARG ASP PRO ALA GLY ASN CYS VAL HIS SEQRES 10 B 124 PHE VAL ALA GLU GLU GLN ASP
HET BY6 A 301 91 HET CU A 302 1 HET CL A 303 1 HET BY6 B 401 91 HET CU B 402 1 HET CL B 403 1 HET CL B 404 1
HETNAM BY6 [(2S,3R,4R,5S,6S)-2-[(3R,4R,5R,6R)-2-[(1R,2S)-2-[[6- HETNAM 2 BY6 AMINO-2-[(1S)-3-AMINO-1-[(2,3-DIAMINO-3-OXOPROPYL) HETNAM 3 BY6 AMINO]-3-OXOPROPYL]-5-METHYLPYRIMIDINE-4- HETNAM 4 BY6 CARBONYL]AMINO]-3-[[(2S,3R,4R)-5-[[(2R,3S)-1-[2-[4-[4- HETNAM 5 BY6 [3-[4-(3-AMINOPROPYLAMINO)BUTYLAMINO]PROPYLCARBAMOYL]- HETNAM 6 BY6 1,3-THIAZOL-2-YL]-1,3-THIAZOL-2-YL]ETHYLAMINO]-3- HETNAM 7 BY6 HYDROXY-1-OXOBUTAN-2-YL]AMINO]-3-HYDROXY-4-METHYL-5- HETNAM 8 BY6 OXOPENTAN-2-YL]AMINO]-1-(3H-IMIDAZOL-4-YL)-3- HETNAM 9 BY6 OXOPROPOXY]-4,5-DIHYDROXY-6-(HYDROXYMETHYL)OXAN-3- HETNAM 10 BY6 YL]OXY-3,5-DIHYDROXY-6-(HYDROXYMETHYL)OXAN-4-YL] HETNAM 11 BY6 CARBAMATE HETNAM CU COPPER (II) ION HETNAM CL CHLORIDE ION
HETSYN BY6 BLEOMYCIN A6
FORMUL 3 BY6 2(C60 H96 N20 O21 S2) FORMUL 4 CU 2(CU 2+) FORMUL 5 CL 3(CL 1-) FORMUL 10 HOH *209(H2 O)
HELIX 1 1 ASP A 15 ARG A 26 1 12 HELIX 2 2 VAL A 58 ASN A 61 5 4 HELIX 3 3 GLY A 70 GLU A 80 1 11 HELIX 4 4 ASP B 15 ARG B 26 1 12 HELIX 5 5 VAL B 58 ASN B 61 5 4 HELIX 6 6 GLY B 70 SER B 79 1 10
SHEET 1 A 8 SER A 30 VAL A 34 0 SHEET 2 A 8 PHE A 38 ARG A 43 -1 O GLY A 40 N ASP A 32 SHEET 3 A 8 VAL A 46 ALA A 52 -1 O LEU A 48 N VAL A 41 SHEET 4 A 8 LYS A 3 ALA A 13 1 N LEU A 11 O PHE A 49 SHEET 5 A 8 LEU B 63 ARG B 69 -1 O TRP B 65 N VAL A 8 SHEET 6 A 8 CYS B 115 ALA B 120 1 O VAL B 119 N VAL B 66 SHEET 7 A 8 GLU B 105 ARG B 109 -1 N PHE B 106 O PHE B 118 SHEET 8 A 8 ALA B 93 MET B 94 -1 N ALA B 93 O ARG B 109 SHEET 1 B 3 ALA A 93 MET A 94 0 SHEET 2 B 3 GLY A 103 ARG A 109 -1 O ARG A 109 N ALA A 93 SHEET 3 B 3 GLY A 98 GLN A 100 -1 N GLY A 98 O GLU A 105 SHEET 1 C 8 ALA A 93 MET A 94 0 SHEET 2 C 8 GLY A 103 ARG A 109 -1 O ARG A 109 N ALA A 93 SHEET 3 C 8 CYS A 115 ALA A 120 -1 O PHE A 118 N PHE A 106 SHEET 4 C 8 LEU A 63 ARG A 69 1 N VAL A 66 O VAL A 119 SHEET 5 C 8 LYS B 3 ALA B 13 -1 O VAL B 8 N TRP A 65 SHEET 6 C 8 VAL B 46 ALA B 52 1 O PHE B 49 N LEU B 11 SHEET 7 C 8 PHE B 38 ARG B 43 -1 N VAL B 41 O LEU B 48 SHEET 8 C 8 SER B 30 VAL B 34 -1 N SER B 30 O VAL B 42
LINK CU CU A 302 NJ BY6 A 301 1555 1555 2.05 LINK CU CU A 302 NC BY6 A 301 1555 1555 2.23 LINK CU CU A 302 NB BY6 A 301 1555 1555 2.38 LINK CU CU A 302 NG BY6 A 301 1555 1555 1.99 LINK CU CU A 302 NH BY6 A 301 1555 1555 2.20 LINK CU CU B 402 NG BY6 B 401 1555 1555 1.94 LINK CU CU B 402 NB BY6 B 401 1555 1555 2.32 LINK CU CU B 402 NH BY6 B 401 1555 1555 2.16 LINK CU CU B 402 NC BY6 B 401 1555 1555 2.31 LINK CU CU B 402 NJ BY6 B 401 1555 1555 2.13
SITE 1 AC1 43 ARG A 14 ASP A 36 ASP A 37 ALA A 52 SITE 2 AC1 43 GLN A 54 PRO A 59 ASP A 60 ASN A 61 SITE 3 AC1 43 THR A 62 LEU A 63 TRP A 65 PHE A 86 SITE 4 AC1 43 ARG A 87 TRP A 102 ALA A 107 ARG A 109 SITE 5 AC1 43 GLY A 113 CYS A 115 HIS A 117 CU A 302 SITE 6 AC1 43 CL A 303 HOH A 508 HOH A 518 HOH A 520 SITE 7 AC1 43 HOH A 533 HOH A 548 HOH A 549 HOH A 559 SITE 8 AC1 43 HOH A 566 HOH A 569 HOH A 578 HOH A 579 SITE 9 AC1 43 HOH A 595 HOH A 642 PHE B 33 GLU B 35 SITE 10 AC1 43 PHE B 38 PHE B 49 SER B 51 ALA B 52 SITE 11 AC1 43 VAL B 53 HOH B 574 HOH B 606 SITE 1 AC2 1 BY6 A 301 SITE 1 AC3 3 LEU A 63 HIS A 117 BY6 A 301 SITE 1 AC4 28 PHE A 33 GLU A 35 PHE A 38 ALA A 52 SITE 2 AC4 28 VAL A 53 ARG A 87 HOH A 614 HOH A 630 SITE 3 AC4 28 PRO B 59 ASP B 60 ASN B 61 THR B 62 SITE 4 AC4 28 LEU B 63 TRP B 65 ALA B 107 ARG B 109 SITE 5 AC4 28 GLY B 113 CYS B 115 HIS B 117 CU B 402 SITE 6 AC4 28 CL B 403 HOH B 555 HOH B 584 HOH B 638 SITE 7 AC4 28 HOH B 693 HOH B 694 HOH B 695 HOH B 699 SITE 1 AC5 2 BY6 B 401 CL B 403 SITE 1 AC6 2 BY6 B 401 CU B 402 SITE 1 AC7 4 ALA A 2 GLU B 21 ASP B 25 GLU B 73
CRYST1 39.992 53.868 125.498 90.00 90.00 90.00 P 21 21 21 8
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 0.025005 0.000000 0.000000 0.00000
SCALE2 0.000000 0.018564 0.000000 0.00000
SCALE3 0.000000 0.000000 0.007968 0.00000