10 20 30 40 50 60 70 80 2Z5T - Header ----|----|----|----|----|----|----|----|----|----|----|----|----|----|----|----| Asymmetric UnitHEADER CELL CYCLE 17-JUL-07 2Z5T
TITLE MOLECULAR BASIS FOR THE INHIBITION OF P53 BY MDMX
COMPND MOL_ID: 1; COMPND 2 MOLECULE: MDM4 PROTEIN; COMPND 3 CHAIN: M, N, O; COMPND 4 FRAGMENT: SWIB DOMAIN; COMPND 5 SYNONYM: ZEBRAFISH MDMX WITH L46V AND V95L MUTATIONS; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES; COMPND 8 MOL_ID: 2; COMPND 9 MOLECULE: CELLULAR TUMOR ANTIGEN P53; COMPND 10 CHAIN: P, Q, R; COMPND 11 FRAGMENT: TRANSACTIVATION DOMAIN; COMPND 12 SYNONYM: TUMOR SUPPRESSOR P53, PHOSPHOPROTEIN P53, ANTIGEN COMPND 13 NY-CO-13; COMPND 14 ENGINEERED: YES
SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: DANIO RERIO; SOURCE 3 ORGANISM_COMMON: ZEBRAFISH; SOURCE 4 GENE: MDM4; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 7 EXPRESSION_SYSTEM_PLASMID: PET-46; SOURCE 8 MOL_ID: 2; SOURCE 9 SYNTHETIC: YES; SOURCE 10 OTHER_DETAILS: RP HPLC PURIFIED
KEYWDS MDMX, MDM4, MDM2, P53, ACETYLATION, ACTIVATOR, ANTI- KEYWDS 2 ONCOGENE, APOPTOSIS, CELL CYCLE, CYTOPLASM, DISEASE KEYWDS 3 MUTATION, DNA-BINDING, ENDOPLASMIC RETICULUM, NUCLEUS, KEYWDS 4 PHOSPHORYLATION, POLYMORPHISM, TRANSCRIPTION REGULATION
EXPDTA X-RAY DIFFRACTION
AUTHOR G.M.POPOWICZ,A.CZARNA,U.ROTHWEILER,A.SZWAGIERCZAK,T.A.HOLAK
REVDAT 3 24-FEB-09 2Z5T 1 VERSN REVDAT 2 15-JUL-08 2Z5T 1 JRNL REVDAT 1 06-NOV-07 2Z5T 0
JRNL AUTH G.M.POPOWICZ,A.CZARNA,U.ROTHWEILER,A.SZWAGIERCZAK, JRNL AUTH 2 M.KRAJEWSKI,L.WEBER,T.A.HOLAK JRNL TITL MOLECULAR BASIS FOR THE INHIBITION OF P53 BY MDMX. JRNL REF CELL CYCLE V. 6 2386 2007 JRNL REFN ISSN 1538-4101 JRNL PMID 17938582
REMARK 1
REMARK 2 REMARK 2 RESOLUTION. 2.30 ANGSTROMS.
REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 2.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.0 REMARK 3 NUMBER OF REFLECTIONS : 20789 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.213 REMARK 3 R VALUE (WORKING SET) : 0.211 REMARK 3 FREE R VALUE : 0.264 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1117 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.30 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.36 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1491 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 96.63 REMARK 3 BIN R VALUE (WORKING SET) : 0.2150 REMARK 3 BIN FREE R VALUE SET COUNT : 87 REMARK 3 BIN FREE R VALUE : 0.3030 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2487 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 355 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 21.14 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.69000 REMARK 3 B22 (A**2) : -1.02000 REMARK 3 B33 (A**2) : 1.43000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -0.64000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.272 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.230 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.159 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 6.268 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.913 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.863 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2544 ; 0.009 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3437 ; 1.189 ; 1.985 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 301 ; 6.062 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 110 ;36.454 ;24.455 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 473 ;16.737 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 11 ;20.976 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 387 ; 0.086 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1858 ; 0.003 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1321 ; 0.193 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1705 ; 0.297 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 266 ; 0.151 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 50 ; 0.176 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 18 ; 0.188 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1576 ; 0.573 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2489 ; 0.976 ; 2.000 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1081 ; 1.306 ; 3.000 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 948 ; 2.045 ; 4.500 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE REMARK 3 RIDING POSITIONS
REMARK 4 REMARK 4 2Z5T COMPLIES WITH FORMAT V. 3.15, 01-DEC-08
REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 25-JUL-07. REMARK 100 THE RCSB ID CODE IS RCSB027557.
REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 28-APR-07 REMARK 200 TEMPERATURE (KELVIN) : 90 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : MPG/DESY, HAMBURG REMARK 200 BEAMLINE : BW6 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.05 REMARK 200 MONOCHROMATOR : MIRROR REMARK 200 OPTICS : MIRROR REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MAR CCD 130 MM REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 23555 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.300 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 93.2 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : 0.09300 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.30 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.40 REMARK 200 COMPLETENESS FOR SHELL (%) : 96.3 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.25000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 5.250 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: PDB ENTRY 1T4F REMARK 200 REMARK 200 REMARK: NULL
REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.16 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.33 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 30% PEG 300, 0.1M MES, PH6.5, VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 280K
REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 15.27000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL
REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA.
REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 890 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 6090 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -10.2 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: M, P REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 950 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 6230 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -9.8 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: N, Q REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 900 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 6250 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -10.6 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: O, R REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000
REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET M 1 REMARK 465 ALA M 2 REMARK 465 HIS M 3 REMARK 465 HIS M 4 REMARK 465 HIS M 5 REMARK 465 HIS M 6 REMARK 465 HIS M 7 REMARK 465 HIS M 8 REMARK 465 ASP M 9 REMARK 465 ASP M 10 REMARK 465 ASP M 11 REMARK 465 ASP M 12 REMARK 465 LYS M 13 REMARK 465 ILE M 14 REMARK 465 ARG M 15 REMARK 465 THR M 16 REMARK 465 LEU M 17 REMARK 465 ASN M 107 REMARK 465 ASN M 108 REMARK 465 SER M 109 REMARK 465 ASP M 110 REMARK 465 ALA M 111 REMARK 465 ALA M 112 REMARK 465 LYS M 113 REMARK 465 ASN M 114 REMARK 465 LEU M 115 REMARK 465 SER M 116 REMARK 465 VAL M 117 REMARK 465 GLY M 118 REMARK 465 LYS M 119 REMARK 465 ASP M 120 REMARK 465 SER M 121 REMARK 465 ASN M 122 REMARK 465 GLU M 123 REMARK 465 SER M 124 REMARK 465 PRO M 125 REMARK 465 SER M 126 REMARK 465 GLU M 127 REMARK 465 ASP M 128 REMARK 465 PRO M 129 REMARK 465 GLY M 130 REMARK 465 GLN M 131 REMARK 465 VAL M 132 REMARK 465 SER M 133 REMARK 465 SER M 134 REMARK 465 GLY M 135 REMARK 465 SER M 136 REMARK 465 ILE M 137 REMARK 465 ASN M 138 REMARK 465 SER M 139 REMARK 465 ALA M 140 REMARK 465 SER P 15 REMARK 465 GLN P 16 REMARK 465 GLU P 28 REMARK 465 ASN P 29 REMARK 465 MET N 1 REMARK 465 ALA N 2 REMARK 465 HIS N 3 REMARK 465 HIS N 4 REMARK 465 HIS N 5 REMARK 465 HIS N 6 REMARK 465 HIS N 7 REMARK 465 HIS N 8 REMARK 465 ASP N 9 REMARK 465 ASP N 10 REMARK 465 ASP N 11 REMARK 465 ASP N 12 REMARK 465 LYS N 13 REMARK 465 LEU N 106 REMARK 465 ASN N 107 REMARK 465 ASN N 108 REMARK 465 SER N 109 REMARK 465 ASP N 110 REMARK 465 ALA N 111 REMARK 465 ALA N 112 REMARK 465 LYS N 113 REMARK 465 ASN N 114 REMARK 465 LEU N 115 REMARK 465 SER N 116 REMARK 465 VAL N 117 REMARK 465 GLY N 118 REMARK 465 LYS N 119 REMARK 465 ASP N 120 REMARK 465 SER N 121 REMARK 465 ASN N 122 REMARK 465 GLU N 123 REMARK 465 SER N 124 REMARK 465 PRO N 125 REMARK 465 SER N 126 REMARK 465 GLU N 127 REMARK 465 ASP N 128 REMARK 465 PRO N 129 REMARK 465 GLY N 130 REMARK 465 GLN N 131 REMARK 465 VAL N 132 REMARK 465 SER N 133 REMARK 465 SER N 134 REMARK 465 GLY N 135 REMARK 465 SER N 136 REMARK 465 ILE N 137 REMARK 465 ASN N 138 REMARK 465 SER N 139 REMARK 465 ALA N 140 REMARK 465 SER Q 15 REMARK 465 GLN Q 16 REMARK 465 GLU Q 28 REMARK 465 ASN Q 29 REMARK 465 MET O 1 REMARK 465 ALA O 2 REMARK 465 HIS O 3 REMARK 465 HIS O 4 REMARK 465 HIS O 5 REMARK 465 HIS O 6 REMARK 465 HIS O 7 REMARK 465 HIS O 8 REMARK 465 ASP O 9 REMARK 465 ASP O 10 REMARK 465 ASP O 11 REMARK 465 ASP O 12 REMARK 465 LYS O 13 REMARK 465 ASN O 107 REMARK 465 ASN O 108 REMARK 465 SER O 109 REMARK 465 ASP O 110 REMARK 465 ALA O 111 REMARK 465 ALA O 112 REMARK 465 LYS O 113 REMARK 465 ASN O 114 REMARK 465 LEU O 115 REMARK 465 SER O 116 REMARK 465 VAL O 117 REMARK 465 GLY O 118 REMARK 465 LYS O 119 REMARK 465 ASP O 120 REMARK 465 SER O 121 REMARK 465 ASN O 122 REMARK 465 GLU O 123 REMARK 465 SER O 124 REMARK 465 PRO O 125 REMARK 465 SER O 126 REMARK 465 GLU O 127 REMARK 465 ASP O 128 REMARK 465 PRO O 129 REMARK 465 GLY O 130 REMARK 465 GLN O 131 REMARK 465 VAL O 132 REMARK 465 SER O 133 REMARK 465 SER O 134 REMARK 465 GLY O 135 REMARK 465 SER O 136 REMARK 465 ILE O 137 REMARK 465 ASN O 138 REMARK 465 SER O 139 REMARK 465 ALA O 140 REMARK 465 SER R 15 REMARK 465 GLN R 16 REMARK 465 GLU R 28 REMARK 465 ASN R 29
REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS(M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ASN M 102 ND2 REMARK 470 ASN N 102 ND2 REMARK 470 ASN O 102 ND2
REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU M 20 66.37 -68.94 REMARK 500 GLN M 40 71.00 -110.96 REMARK 500 LEU P 25 38.34 -90.03 REMARK 500 GLU N 20 55.92 -140.66 REMARK 500 REMARK 500 REMARK: NULL
REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2Z5S RELATED DB: PDB REMARK 900 WILD-TYPE STRUCTURE OF ZEBRAFISH MDMX SWIB DOMAIN REMARK 900 RELATED ID: 2CR8 RELATED DB: PDB REMARK 900 OTHER DOMAIN OF THE SAME PROTEIN REMARK 900 RELATED ID: 1YCR RELATED DB: PDB REMARK 900 HOMOLOGOUS PROTEIN
DBREF 2Z5T M 15 140 UNP Q4V944 Q4V944_DANRE 15 140 DBREF 2Z5T P 15 29 UNP P04637 P53_HUMAN 15 29 DBREF 2Z5T N 15 140 UNP Q4V944 Q4V944_DANRE 15 140 DBREF 2Z5T Q 15 29 UNP P04637 P53_HUMAN 15 29 DBREF 2Z5T O 15 140 UNP Q4V944 Q4V944_DANRE 15 140 DBREF 2Z5T R 15 29 UNP P04637 P53_HUMAN 15 29
SEQADV 2Z5T MET M 1 UNP Q4V944 EXPRESSION TAG SEQADV 2Z5T ALA M 2 UNP Q4V944 EXPRESSION TAG SEQADV 2Z5T HIS M 3 UNP Q4V944 EXPRESSION TAG SEQADV 2Z5T HIS M 4 UNP Q4V944 EXPRESSION TAG SEQADV 2Z5T HIS M 5 UNP Q4V944 EXPRESSION TAG SEQADV 2Z5T HIS M 6 UNP Q4V944 EXPRESSION TAG SEQADV 2Z5T HIS M 7 UNP Q4V944 EXPRESSION TAG SEQADV 2Z5T HIS M 8 UNP Q4V944 EXPRESSION TAG SEQADV 2Z5T ASP M 9 UNP Q4V944 EXPRESSION TAG SEQADV 2Z5T ASP M 10 UNP Q4V944 EXPRESSION TAG SEQADV 2Z5T ASP M 11 UNP Q4V944 EXPRESSION TAG SEQADV 2Z5T ASP M 12 UNP Q4V944 EXPRESSION TAG SEQADV 2Z5T LYS M 13 UNP Q4V944 EXPRESSION TAG SEQADV 2Z5T ILE M 14 UNP Q4V944 EXPRESSION TAG SEQADV 2Z5T VAL M 46 UNP Q4V944 LEU 46 ENGINEERED SEQADV 2Z5T LEU M 95 UNP Q4V944 VAL 95 ENGINEERED SEQADV 2Z5T MET N 1 UNP Q4V944 EXPRESSION TAG SEQADV 2Z5T ALA N 2 UNP Q4V944 EXPRESSION TAG SEQADV 2Z5T HIS N 3 UNP Q4V944 EXPRESSION TAG SEQADV 2Z5T HIS N 4 UNP Q4V944 EXPRESSION TAG SEQADV 2Z5T HIS N 5 UNP Q4V944 EXPRESSION TAG SEQADV 2Z5T HIS N 6 UNP Q4V944 EXPRESSION TAG SEQADV 2Z5T HIS N 7 UNP Q4V944 EXPRESSION TAG SEQADV 2Z5T HIS N 8 UNP Q4V944 EXPRESSION TAG SEQADV 2Z5T ASP N 9 UNP Q4V944 EXPRESSION TAG SEQADV 2Z5T ASP N 10 UNP Q4V944 EXPRESSION TAG SEQADV 2Z5T ASP N 11 UNP Q4V944 EXPRESSION TAG SEQADV 2Z5T ASP N 12 UNP Q4V944 EXPRESSION TAG SEQADV 2Z5T LYS N 13 UNP Q4V944 EXPRESSION TAG SEQADV 2Z5T ILE N 14 UNP Q4V944 EXPRESSION TAG SEQADV 2Z5T VAL N 46 UNP Q4V944 LEU 46 ENGINEERED SEQADV 2Z5T LEU N 95 UNP Q4V944 VAL 95 ENGINEERED SEQADV 2Z5T MET O 1 UNP Q4V944 EXPRESSION TAG SEQADV 2Z5T ALA O 2 UNP Q4V944 EXPRESSION TAG SEQADV 2Z5T HIS O 3 UNP Q4V944 EXPRESSION TAG SEQADV 2Z5T HIS O 4 UNP Q4V944 EXPRESSION TAG SEQADV 2Z5T HIS O 5 UNP Q4V944 EXPRESSION TAG SEQADV 2Z5T HIS O 6 UNP Q4V944 EXPRESSION TAG SEQADV 2Z5T HIS O 7 UNP Q4V944 EXPRESSION TAG SEQADV 2Z5T HIS O 8 UNP Q4V944 EXPRESSION TAG SEQADV 2Z5T ASP O 9 UNP Q4V944 EXPRESSION TAG SEQADV 2Z5T ASP O 10 UNP Q4V944 EXPRESSION TAG SEQADV 2Z5T ASP O 11 UNP Q4V944 EXPRESSION TAG SEQADV 2Z5T ASP O 12 UNP Q4V944 EXPRESSION TAG SEQADV 2Z5T LYS O 13 UNP Q4V944 EXPRESSION TAG SEQADV 2Z5T ILE O 14 UNP Q4V944 EXPRESSION TAG SEQADV 2Z5T VAL O 46 UNP Q4V944 LEU 46 ENGINEERED SEQADV 2Z5T LEU O 95 UNP Q4V944 VAL 95 ENGINEERED
SEQRES 1 M 140 MET ALA HIS HIS HIS HIS HIS HIS ASP ASP ASP ASP LYS SEQRES 2 M 140 ILE ARG THR LEU PRO GLY GLU GLY THR GLN VAL HIS PRO SEQRES 3 M 140 ARG ALA PRO LEU LEU GLN ILE LEU LYS VAL ALA GLY ALA SEQRES 4 M 140 GLN GLU GLU VAL PHE THR VAL LYS GLU VAL MET HIS TYR SEQRES 5 M 140 LEU GLY GLN TYR ILE MET MET LYS GLN LEU TYR ASP LYS SEQRES 6 M 140 GLN ARG GLN HIS ILE VAL HIS CYS HIS ASP ASP PRO LEU SEQRES 7 M 140 GLY GLU LEU LEU GLU VAL GLY SER PHE SER VAL LYS ASN SEQRES 8 M 140 PRO SER PRO LEU TYR GLU MET LEU LYS ARG ASN LEU VAL SEQRES 9 M 140 ILE LEU ASN ASN SER ASP ALA ALA LYS ASN LEU SER VAL SEQRES 10 M 140 GLY LYS ASP SER ASN GLU SER PRO SER GLU ASP PRO GLY SEQRES 11 M 140 GLN VAL SER SER GLY SER ILE ASN SER ALA SEQRES 1 P 15 SER GLN GLU THR PHE SER ASP LEU TRP LYS LEU LEU PRO SEQRES 2 P 15 GLU ASN SEQRES 1 N 140 MET ALA HIS HIS HIS HIS HIS HIS ASP ASP ASP ASP LYS SEQRES 2 N 140 ILE ARG THR LEU PRO GLY GLU GLY THR GLN VAL HIS PRO SEQRES 3 N 140 ARG ALA PRO LEU LEU GLN ILE LEU LYS VAL ALA GLY ALA SEQRES 4 N 140 GLN GLU GLU VAL PHE THR VAL LYS GLU VAL MET HIS TYR SEQRES 5 N 140 LEU GLY GLN TYR ILE MET MET LYS GLN LEU TYR ASP LYS SEQRES 6 N 140 GLN ARG GLN HIS ILE VAL HIS CYS HIS ASP ASP PRO LEU SEQRES 7 N 140 GLY GLU LEU LEU GLU VAL GLY SER PHE SER VAL LYS ASN SEQRES 8 N 140 PRO SER PRO LEU TYR GLU MET LEU LYS ARG ASN LEU VAL SEQRES 9 N 140 ILE LEU ASN ASN SER ASP ALA ALA LYS ASN LEU SER VAL SEQRES 10 N 140 GLY LYS ASP SER ASN GLU SER PRO SER GLU ASP PRO GLY SEQRES 11 N 140 GLN VAL SER SER GLY SER ILE ASN SER ALA SEQRES 1 Q 15 SER GLN GLU THR PHE SER ASP LEU TRP LYS LEU LEU PRO SEQRES 2 Q 15 GLU ASN SEQRES 1 O 140 MET ALA HIS HIS HIS HIS HIS HIS ASP ASP ASP ASP LYS SEQRES 2 O 140 ILE ARG THR LEU PRO GLY GLU GLY THR GLN VAL HIS PRO SEQRES 3 O 140 ARG ALA PRO LEU LEU GLN ILE LEU LYS VAL ALA GLY ALA SEQRES 4 O 140 GLN GLU GLU VAL PHE THR VAL LYS GLU VAL MET HIS TYR SEQRES 5 O 140 LEU GLY GLN TYR ILE MET MET LYS GLN LEU TYR ASP LYS SEQRES 6 O 140 GLN ARG GLN HIS ILE VAL HIS CYS HIS ASP ASP PRO LEU SEQRES 7 O 140 GLY GLU LEU LEU GLU VAL GLY SER PHE SER VAL LYS ASN SEQRES 8 O 140 PRO SER PRO LEU TYR GLU MET LEU LYS ARG ASN LEU VAL SEQRES 9 O 140 ILE LEU ASN ASN SER ASP ALA ALA LYS ASN LEU SER VAL SEQRES 10 O 140 GLY LYS ASP SER ASN GLU SER PRO SER GLU ASP PRO GLY SEQRES 11 O 140 GLN VAL SER SER GLY SER ILE ASN SER ALA SEQRES 1 R 15 SER GLN GLU THR PHE SER ASP LEU TRP LYS LEU LEU PRO SEQRES 2 R 15 GLU ASN
FORMUL 7 HOH *355(H2 O)
HELIX 1 1 ARG M 27 ALA M 37 1 11 HELIX 2 2 VAL M 46 LYS M 60 1 15 HELIX 3 3 ASP M 76 GLU M 83 1 8 HELIX 4 4 PRO M 92 ASN M 102 1 11 HELIX 5 5 THR P 18 LEU P 25 1 8 HELIX 6 6 ARG N 27 ALA N 37 1 11 HELIX 7 7 VAL N 46 LYS N 60 1 15 HELIX 8 8 ASP N 76 GLU N 83 1 8 HELIX 9 9 PRO N 92 ASN N 102 1 11 HELIX 10 10 THR Q 18 LYS Q 24 1 7 HELIX 11 11 ARG O 27 ALA O 37 1 11 HELIX 12 12 THR O 45 LYS O 60 1 16 HELIX 13 13 ASP O 76 GLU O 83 1 8 HELIX 14 14 PRO O 92 ASN O 102 1 11 HELIX 15 15 THR R 18 LEU R 26 1 9
SHEET 1 A 3 PHE M 44 THR M 45 0 SHEET 2 A 3 GLN M 23 PRO M 26 -1 N VAL M 24 O PHE M 44 SHEET 3 A 3 LEU M 103 ILE M 105 -1 O VAL M 104 N HIS M 25 SHEET 1 B 2 ILE M 70 HIS M 72 0 SHEET 2 B 2 SER M 86 SER M 88 -1 O PHE M 87 N VAL M 71 SHEET 1 C 3 PHE N 44 THR N 45 0 SHEET 2 C 3 GLN N 23 PRO N 26 -1 N VAL N 24 O PHE N 44 SHEET 3 C 3 LEU N 103 VAL N 104 -1 O VAL N 104 N HIS N 25 SHEET 1 D 2 ILE N 70 HIS N 72 0 SHEET 2 D 2 SER N 86 SER N 88 -1 O PHE N 87 N VAL N 71 SHEET 1 E 2 VAL O 24 PRO O 26 0 SHEET 2 E 2 LEU O 103 ILE O 105 -1 O VAL O 104 N HIS O 25 SHEET 1 F 2 ILE O 70 HIS O 72 0 SHEET 2 F 2 SER O 86 SER O 88 -1 O PHE O 87 N VAL O 71
CRYST1 81.080 30.540 101.100 90.00 102.94 90.00 P 1 21 1 6
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 0.012333 0.000000 0.002834 0.00000
SCALE2 0.000000 0.032744 0.000000 0.00000
SCALE3 0.000000 0.000000 0.010149 0.00000