10 20 30 40 50 60 70 80 2Z2D - Header ----|----|----|----|----|----|----|----|----|----|----|----|----|----|----|----| Asymmetric UnitHEADER HYDROLASE 18-MAY-07 2Z2D
TITLE SOLUTION STRUCTURE OF HUMAN MACROPHAGE ELASTASE (MMP-12) TITLE 2 CATALYTIC DOMAIN COMPLEXED WITH A GAMMA-KETO BUTANOIC ACID TITLE 3 INHIBITOR
COMPND MOL_ID: 1; COMPND 2 MOLECULE: MACROPHAGE METALLOELASTASE; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: CATALYTIC DOMAIN, UNP RESIDUES 106-263; COMPND 5 SYNONYM: HME, MATRIX METALLOPROTEINASE-12, MMP-12, COMPND 6 MACROPHAGE ELASTASE, ME; COMPND 7 EC: 3.4.24.65; COMPND 8 ENGINEERED: YES
SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: MMP12; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET11C
KEYWDS HUMAN MACROPHAGE ELASTASE,COMPLEX, SOLUTION STRUCTURE, KEYWDS 2 HYDROLASE
EXPDTA SOLUTION NMR
NUMMDL 15
AUTHOR X.ZHENG,L.OU
REVDAT 2 24-FEB-09 2Z2D 1 VERSN REVDAT 1 20-NOV-07 2Z2D 0
JRNL AUTH X.ZHENG,L.OU JRNL TITL SOLUTION STRUCTURE OF HUMAN MACROPHAGE ELASTASE JRNL TITL 2 (MMP-12) CATALYTIC DOMAIN COMPLEXED WITH A JRNL TITL 3 GAMMA-KETO BUTANOIC ACID INHIBITOR JRNL REF TO BE PUBLISHED JRNL REFN
REMARK 1
REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE.
REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CYANA 2.1 REMARK 3 AUTHORS : PETER GUNTERT, TORSTEN HERRMANN REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL
REMARK 4 REMARK 4 2Z2D COMPLIES WITH FORMAT V. 3.15, 01-DEC-08
REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 24-MAY-07. REMARK 100 THE RCSB ID CODE IS RCSB027433.
REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 6.8 REMARK 210 IONIC STRENGTH : 0.1M NACL REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 0.5MM MMP-12 U-15N, 13C; 10MM REMARK 210 DEUTERATED TRIS, 10MM CACL2, REMARK 210 0.1MM ZNCL2, 0.1M NACL; 90% REMARK 210 H2O, 10% D2O; 0.5MM MMP-12 U- REMARK 210 15N, 13C; 10MM DEUTERATED REMARK 210 TRIS, 10MM CACL2, 0.1MM ZNCL2, REMARK 210 0.1M NACL; 99.9% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_15N-SEPARATED_NOESY, 3D_ REMARK 210 13C-SEPARATED_NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ REMARK 210 SPECTROMETER MODEL : INOVA REMARK 210 SPECTROMETER MANUFACTURER : VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : VNMR 6.1C, NMRPIPE 2.5, REMARK 210 SPARKY 3.112, CYANA 2.1 REMARK 210 METHOD USED : DISTANCE GEOMETRY, SIMULATED REMARK 210 ANNEALING, TORSION ANGLE REMARK 210 DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 200 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 15 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: THE STRUCTURE WAS DETERMINED USING TRIPLE-RESONANCE NMR REMARK 210 SPECTROSCOPY. ALL NMR EXPERIMENTS FOR PROTEIN ASSIGNMENTS AND REMARK 210 STRUCTURE CALCULATIONS WERE ACQUIRED ON VARIAN UNITY INOVA 600 REMARK 210 MHZ SPECTROMETERS, WHICH EQUIPPED WITH A TRIPLE RESONANCE CRYO REMARK 210 -PROBE WITH Z AXIS PULSE FIELD GRADIENT.
REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS.
REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 465 SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 MODELS 1-15 REMARK 465 RES C SSSEQI REMARK 465 PHE A 100 REMARK 465 ARG A 101 REMARK 465 GLU A 102 REMARK 465 MET A 103 REMARK 465 PRO A 104 REMARK 465 GLY A 105
REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 1 HIS A 196 CE1 HIS A 196 NE2 -0.069 REMARK 500 3 HIS A 196 CE1 HIS A 196 NE2 -0.074 REMARK 500 14 HIS A 196 CE1 HIS A 196 NE2 -0.084 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 1 ARG A 135 NE - CZ - NH1 ANGL. DEV. = 3.0 DEGREES REMARK 500 1 ARG A 135 NE - CZ - NH2 ANGL. DEV. = -3.1 DEGREES REMARK 500 1 ASP A 170 CB - CG - OD2 ANGL. DEV. = 8.2 DEGREES REMARK 500 1 ASP A 175 CB - CG - OD2 ANGL. DEV. = -6.4 DEGREES REMARK 500 2 ASP A 170 CB - CG - OD1 ANGL. DEV. = -5.5 DEGREES REMARK 500 2 GLU A 199 OE1 - CD - OE2 ANGL. DEV. = 8.0 DEGREES REMARK 500 2 ASP A 253 CB - CG - OD2 ANGL. DEV. = -5.5 DEGREES REMARK 500 3 GLU A 128 OE1 - CD - OE2 ANGL. DEV. = 8.3 DEGREES REMARK 500 3 ASP A 131 CB - CG - OD2 ANGL. DEV. = -6.2 DEGREES REMARK 500 3 ASP A 175 CB - CG - OD2 ANGL. DEV. = -8.8 DEGREES REMARK 500 3 GLU A 199 OE1 - CD - OE2 ANGL. DEV. = 11.3 DEGREES REMARK 500 3 ASP A 200 CB - CG - OD2 ANGL. DEV. = -6.7 DEGREES REMARK 500 3 ASP A 231 CB - CG - OD2 ANGL. DEV. = -9.0 DEGREES REMARK 500 3 ASP A 244 OD1 - CG - OD2 ANGL. DEV. = 13.7 DEGREES REMARK 500 3 ASP A 244 CB - CG - OD1 ANGL. DEV. = -6.3 DEGREES REMARK 500 3 ASP A 244 CB - CG - OD2 ANGL. DEV. = -7.3 DEGREES REMARK 500 3 ASP A 253 CB - CG - OD2 ANGL. DEV. = -5.9 DEGREES REMARK 500 3 ASP A 254 CB - CG - OD2 ANGL. DEV. = -6.9 DEGREES REMARK 500 6 ASP A 198 CB - CG - OD2 ANGL. DEV. = -6.1 DEGREES REMARK 500 6 ASP A 200 CB - CG - OD2 ANGL. DEV. = -6.6 DEGREES REMARK 500 6 ASP A 231 CB - CG - OD2 ANGL. DEV. = -7.0 DEGREES REMARK 500 6 ASP A 244 CB - CG - OD2 ANGL. DEV. = -10.0 DEGREES REMARK 500 6 ASP A 253 CB - CG - OD2 ANGL. DEV. = -5.8 DEGREES REMARK 500 7 ASP A 198 CB - CG - OD1 ANGL. DEV. = 6.1 DEGREES REMARK 500 8 ASP A 124 CB - CG - OD2 ANGL. DEV. = -6.5 DEGREES REMARK 500 8 GLU A 128 OE1 - CD - OE2 ANGL. DEV. = 7.8 DEGREES REMARK 500 8 ASP A 129 CB - CG - OD2 ANGL. DEV. = -6.6 DEGREES REMARK 500 8 ASP A 158 OD1 - CG - OD2 ANGL. DEV. = 11.8 DEGREES REMARK 500 8 ASP A 158 CB - CG - OD2 ANGL. DEV. = -9.5 DEGREES REMARK 500 8 ASP A 198 CB - CG - OD2 ANGL. DEV. = -5.9 DEGREES REMARK 500 8 GLU A 199 OE1 - CD - OE2 ANGL. DEV. = 9.0 DEGREES REMARK 500 8 ASP A 200 CB - CG - OD2 ANGL. DEV. = -5.7 DEGREES REMARK 500 8 GLU A 201 OE1 - CD - OE2 ANGL. DEV. = 7.7 DEGREES REMARK 500 8 GLU A 219 OE1 - CD - OE2 ANGL. DEV. = 10.2 DEGREES REMARK 500 8 ASP A 253 CB - CG - OD2 ANGL. DEV. = -6.1 DEGREES REMARK 500 8 ASP A 254 CB - CG - OD2 ANGL. DEV. = -8.2 DEGREES REMARK 500 9 ASP A 124 CB - CG - OD2 ANGL. DEV. = -6.0 DEGREES REMARK 500 9 ASP A 158 CB - CG - OD2 ANGL. DEV. = -5.9 DEGREES REMARK 500 9 GLU A 201 OE1 - CD - OE2 ANGL. DEV. = 7.7 DEGREES REMARK 500 9 ASP A 231 CB - CG - OD2 ANGL. DEV. = -6.5 DEGREES REMARK 500 9 ASP A 253 CB - CG - OD2 ANGL. DEV. = -5.4 DEGREES REMARK 500 10 GLU A 128 OE1 - CD - OE2 ANGL. DEV. = 8.4 DEGREES REMARK 500 10 ASP A 158 OD1 - CG - OD2 ANGL. DEV. = 11.5 DEGREES REMARK 500 10 ASP A 158 CB - CG - OD1 ANGL. DEV. = -6.1 DEGREES REMARK 500 10 GLU A 199 OE1 - CD - OE2 ANGL. DEV. = 9.3 DEGREES REMARK 500 10 GLU A 219 OE1 - CD - OE2 ANGL. DEV. = 10.1 DEGREES REMARK 500 10 ASP A 254 CB - CG - OD2 ANGL. DEV. = -6.5 DEGREES REMARK 500 11 ASP A 158 CB - CG - OD2 ANGL. DEV. = -5.5 DEGREES REMARK 500 11 GLU A 199 OE1 - CD - OE2 ANGL. DEV. = 8.8 DEGREES REMARK 500 11 ASP A 200 CB - CG - OD2 ANGL. DEV. = -5.7 DEGREES REMARK 500 REMARK 500 THIS ENTRY HAS 70 ANGLE DEVIATIONS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 TRP A 109 72.88 -166.59 REMARK 500 1 LYS A 111 52.57 -157.27 REMARK 500 1 HIS A 112 -55.39 -168.96 REMARK 500 1 ASN A 119 -160.88 -66.87 REMARK 500 1 ASN A 120 39.38 -73.32 REMARK 500 1 TYR A 121 16.80 59.33 REMARK 500 1 THR A 122 158.18 65.98 REMARK 500 1 ASP A 124 -63.71 -93.16 REMARK 500 1 ASN A 153 54.59 -155.09 REMARK 500 1 THR A 154 -69.27 -161.40 REMARK 500 1 ALA A 167 -57.80 -178.21 REMARK 500 1 PHE A 171 54.51 76.58 REMARK 500 1 ALA A 173 95.63 60.94 REMARK 500 1 PHE A 174 -97.52 -57.44 REMARK 500 1 LYS A 177 14.55 -159.86 REMARK 500 1 PRO A 187 -139.02 -61.39 REMARK 500 1 ASP A 198 86.07 -61.83 REMARK 500 1 GLU A 201 174.37 -54.02 REMARK 500 1 HIS A 206 -43.76 80.69 REMARK 500 1 SER A 207 153.98 178.54 REMARK 500 1 LEU A 226 -153.51 -77.16 REMARK 500 1 SER A 230 22.37 80.78 REMARK 500 1 PRO A 232 74.76 -61.73 REMARK 500 1 LYS A 233 -37.27 179.38 REMARK 500 1 MET A 236 -35.76 -175.64 REMARK 500 1 PHE A 237 145.46 -38.16 REMARK 500 1 PHE A 248 93.66 -63.17 REMARK 500 1 LEU A 261 -81.76 -60.92 REMARK 500 2 PRO A 107 93.29 -50.89 REMARK 500 2 TRP A 109 59.18 -162.95 REMARK 500 2 LYS A 111 -50.94 173.81 REMARK 500 2 ASN A 120 -61.14 -155.87 REMARK 500 2 TYR A 121 30.76 152.99 REMARK 500 2 THR A 122 141.54 68.87 REMARK 500 2 THR A 154 52.58 -142.62 REMARK 500 2 MET A 156 95.05 67.12 REMARK 500 2 ALA A 167 43.65 72.19 REMARK 500 2 PHE A 171 -32.88 159.90 REMARK 500 2 HIS A 172 34.48 82.85 REMARK 500 2 ALA A 173 121.13 167.54 REMARK 500 2 PHE A 174 -161.60 -116.73 REMARK 500 2 ASP A 175 -68.68 -99.38 REMARK 500 2 ASP A 194 160.06 -48.29 REMARK 500 2 SER A 207 -71.41 -134.16 REMARK 500 2 HIS A 228 -155.01 -110.55 REMARK 500 2 SER A 230 -5.41 82.54 REMARK 500 2 LYS A 241 104.17 177.31 REMARK 500 2 ASP A 244 -16.31 84.88 REMARK 500 2 ILE A 245 -48.71 74.87 REMARK 500 2 PHE A 248 87.89 -58.51 REMARK 500 2 LEU A 261 -81.71 -69.48 REMARK 500 2 TYR A 262 58.80 -96.81 REMARK 500 3 LYS A 111 -44.13 -153.58 REMARK 500 3 ASN A 119 178.78 -54.36 REMARK 500 3 ASN A 120 45.09 -81.51 REMARK 500 3 TYR A 121 -168.15 53.85 REMARK 500 3 PRO A 146 49.90 -82.12 REMARK 500 3 THR A 154 -70.81 -132.62 REMARK 500 3 ALA A 167 -40.03 -179.89 REMARK 500 3 PHE A 171 -97.43 63.99 REMARK 500 3 HIS A 172 63.97 -115.58 REMARK 500 3 ALA A 173 -159.29 73.97 REMARK 500 3 PHE A 174 -159.88 -133.53 REMARK 500 3 LYS A 177 -40.99 -160.45 REMARK 500 3 ILE A 180 170.81 -45.75 REMARK 500 3 LEU A 181 -66.71 -123.77 REMARK 500 3 PRO A 187 -87.21 -67.66 REMARK 500 3 ASP A 198 83.09 -64.97 REMARK 500 3 GLU A 201 173.92 -49.23 REMARK 500 3 HIS A 206 -59.46 171.46 REMARK 500 3 SER A 207 58.88 158.18 REMARK 500 3 HIS A 228 177.07 62.68 REMARK 500 3 SER A 230 21.39 81.39 REMARK 500 3 LYS A 233 -35.44 -172.29 REMARK 500 3 VAL A 235 88.99 -53.20 REMARK 500 3 MET A 236 -29.33 159.13 REMARK 500 3 LYS A 241 98.24 -175.53 REMARK 500 3 ASP A 244 -3.64 75.85 REMARK 500 3 ILE A 245 5.93 83.00 REMARK 500 3 PHE A 248 91.48 -56.02 REMARK 500 3 TYR A 262 74.44 -105.07 REMARK 500 4 LYS A 111 -42.53 175.05 REMARK 500 4 ASN A 120 33.67 157.16 REMARK 500 4 TYR A 121 -170.96 73.54 REMARK 500 4 LEU A 147 109.63 -56.27 REMARK 500 4 ALA A 167 93.55 80.56 REMARK 500 4 HIS A 168 -95.08 -126.51 REMARK 500 4 PHE A 171 68.73 81.53 REMARK 500 4 HIS A 172 11.50 -142.34 REMARK 500 4 ALA A 173 113.37 63.80 REMARK 500 4 ILE A 180 168.91 -45.24 REMARK 500 4 LEU A 181 -39.09 -148.17 REMARK 500 4 PRO A 187 88.41 -54.33 REMARK 500 4 ASP A 194 107.61 -45.45 REMARK 500 4 GLU A 201 -176.19 -56.54 REMARK 500 4 HIS A 206 65.36 83.46 REMARK 500 4 SER A 207 124.37 71.62 REMARK 500 4 LYS A 241 106.34 178.63 REMARK 500 4 ILE A 245 -10.08 79.05 REMARK 500 4 PHE A 248 87.29 -53.48 REMARK 500 4 LEU A 261 -87.38 -71.24 REMARK 500 5 PRO A 107 158.05 -49.44 REMARK 500 5 TRP A 109 118.87 -177.52 REMARK 500 5 LYS A 111 55.73 -156.04 REMARK 500 5 HIS A 112 -43.51 -166.80 REMARK 500 5 ASN A 120 32.45 161.04 REMARK 500 5 TYR A 121 -151.10 63.28 REMARK 500 5 PRO A 146 44.44 -83.37 REMARK 500 5 ALA A 167 45.14 85.32 REMARK 500 5 ASP A 170 93.89 64.92 REMARK 500 5 PHE A 171 -97.11 69.19 REMARK 500 5 HIS A 172 -132.70 -122.46 REMARK 500 5 SER A 189 -62.89 -125.41 REMARK 500 5 GLU A 201 -178.14 -62.58 REMARK 500 5 PHE A 202 78.00 -117.24 REMARK 500 5 HIS A 206 48.96 77.34 REMARK 500 5 SER A 207 -91.78 -129.09 REMARK 500 5 LEU A 224 -86.89 -45.47 REMARK 500 5 LEU A 226 -75.12 -45.38 REMARK 500 5 HIS A 228 172.75 63.28 REMARK 500 5 SER A 230 -12.25 83.28 REMARK 500 5 LYS A 233 1.89 -68.09 REMARK 500 5 ASP A 244 -16.01 86.68 REMARK 500 5 ILE A 245 -49.57 75.64 REMARK 500 5 PHE A 248 86.54 -68.01 REMARK 500 5 LEU A 261 -93.98 -81.65 REMARK 500 6 PRO A 107 103.03 -51.50 REMARK 500 6 TRP A 109 -89.80 -122.01 REMARK 500 6 LYS A 111 -50.81 -167.42 REMARK 500 6 ASN A 119 -76.26 -43.61 REMARK 500 6 ASN A 120 24.63 -179.18 REMARK 500 6 TYR A 121 -152.56 82.87 REMARK 500 6 ASN A 153 98.17 -163.36 REMARK 500 6 THR A 154 -81.59 -147.03 REMARK 500 6 MET A 156 135.98 72.19 REMARK 500 6 ASP A 158 -73.62 -18.70 REMARK 500 6 ALA A 167 104.04 82.69 REMARK 500 6 HIS A 168 -59.37 -171.18 REMARK 500 6 ASP A 170 147.68 -33.78 REMARK 500 6 PHE A 171 -151.19 78.15 REMARK 500 6 HIS A 172 97.27 -167.51 REMARK 500 6 ALA A 173 77.94 63.74 REMARK 500 6 ASP A 175 -160.27 -58.37 REMARK 500 6 LYS A 177 96.64 75.63 REMARK 500 6 ILE A 180 168.56 -46.97 REMARK 500 6 LEU A 181 -92.26 -121.94 REMARK 500 6 PHE A 185 -71.71 -89.98 REMARK 500 6 SER A 189 83.09 78.00 REMARK 500 6 ASP A 198 82.10 -66.92 REMARK 500 6 GLU A 201 171.71 -49.89 REMARK 500 6 SER A 207 -74.97 -134.26 REMARK 500 6 LEU A 224 -164.31 -78.07 REMARK 500 6 LEU A 226 -82.18 -124.10 REMARK 500 6 SER A 230 23.11 82.11 REMARK 500 6 PHE A 237 141.82 -38.66 REMARK 500 6 LYS A 241 126.14 170.96 REMARK 500 6 ASP A 244 178.22 84.51 REMARK 500 6 ASN A 246 -14.52 -47.77 REMARK 500 6 PHE A 248 88.67 -61.29 REMARK 500 7 PRO A 107 179.52 -52.48 REMARK 500 7 HIS A 112 -41.72 81.96 REMARK 500 7 ASN A 119 -179.37 -61.83 REMARK 500 7 TYR A 121 -150.15 44.19 REMARK 500 7 ALA A 167 40.28 84.28 REMARK 500 7 PHE A 171 -77.65 -165.76 REMARK 500 7 HIS A 172 43.78 83.20 REMARK 500 7 ALA A 173 114.17 159.88 REMARK 500 7 LYS A 177 -36.48 -171.72 REMARK 500 7 ILE A 180 170.73 -51.23 REMARK 500 7 LEU A 181 -41.33 -136.09 REMARK 500 7 SER A 189 97.02 79.75 REMARK 500 7 HIS A 206 62.79 78.89 REMARK 500 7 SER A 207 92.85 85.09 REMARK 500 7 LEU A 226 -154.73 -66.21 REMARK 500 7 HIS A 228 -93.82 -112.67 REMARK 500 7 SER A 229 -43.85 -162.75 REMARK 500 7 SER A 230 28.99 83.84 REMARK 500 7 LYS A 233 -31.13 -179.70 REMARK 500 7 VAL A 235 88.66 -58.40 REMARK 500 7 MET A 236 -20.74 158.37 REMARK 500 7 THR A 239 121.25 -39.60 REMARK 500 7 LYS A 241 124.22 167.40 REMARK 500 7 TYR A 262 -73.68 -92.52 REMARK 500 8 TRP A 109 -158.90 70.67 REMARK 500 8 LYS A 111 -44.83 -153.17 REMARK 500 8 ASN A 120 31.08 159.21 REMARK 500 8 TYR A 121 92.16 77.18 REMARK 500 8 THR A 122 163.82 -49.43 REMARK 500 8 MET A 156 108.72 -165.46 REMARK 500 8 ASP A 170 147.38 -36.22 REMARK 500 8 PHE A 171 -155.11 75.72 REMARK 500 8 HIS A 172 -133.74 -112.57 REMARK 500 8 SER A 189 -93.19 57.28 REMARK 500 8 ASP A 194 150.97 -48.32 REMARK 500 8 GLU A 201 172.64 -55.29 REMARK 500 8 HIS A 206 -148.33 78.81 REMARK 500 8 SER A 207 93.27 -60.72 REMARK 500 8 HIS A 228 -97.81 -65.28 REMARK 500 8 SER A 229 -32.99 -174.30 REMARK 500 8 SER A 230 5.20 83.25 REMARK 500 8 VAL A 235 87.50 -60.55 REMARK 500 8 MET A 236 -23.94 159.62 REMARK 500 8 PHE A 248 99.85 -40.94 REMARK 500 8 LEU A 261 -85.99 -78.75 REMARK 500 8 TYR A 262 -178.14 -64.31 REMARK 500 9 PRO A 107 -86.00 -77.41 REMARK 500 9 LYS A 111 -48.75 -163.28 REMARK 500 9 THR A 122 -53.40 160.56 REMARK 500 9 PRO A 123 -72.04 -75.36 REMARK 500 9 LEU A 147 83.52 -169.35 REMARK 500 9 ASN A 153 51.65 -141.72 REMARK 500 9 ALA A 167 63.44 81.37 REMARK 500 9 HIS A 168 -61.45 -105.38 REMARK 500 9 ASP A 170 -34.73 -37.62 REMARK 500 9 HIS A 172 49.39 -80.68 REMARK 500 9 ALA A 173 69.20 160.03 REMARK 500 9 PHE A 174 -158.98 -83.05 REMARK 500 9 LYS A 177 82.80 70.85 REMARK 500 9 ILE A 180 65.60 89.28 REMARK 500 9 PHE A 185 -87.10 -77.02 REMARK 500 9 SER A 189 57.61 83.76 REMARK 500 9 ILE A 191 0.90 -62.20 REMARK 500 9 GLU A 201 -173.28 -56.48 REMARK 500 9 HIS A 206 -51.94 172.50 REMARK 500 9 SER A 207 50.72 158.66 REMARK 500 9 LEU A 226 172.78 -48.01 REMARK 500 9 HIS A 228 -76.19 -123.96 REMARK 500 9 SER A 229 -36.67 -177.36 REMARK 500 9 SER A 230 23.48 81.06 REMARK 500 9 PHE A 248 99.46 -38.86 REMARK 500 10 TRP A 109 102.59 -168.45 REMARK 500 10 LYS A 111 -49.84 -168.53 REMARK 500 10 ASN A 120 81.13 50.41 REMARK 500 10 TYR A 121 -81.04 -37.73 REMARK 500 10 THR A 122 135.14 175.00 REMARK 500 10 ALA A 167 45.57 154.31 REMARK 500 10 HIS A 168 -155.78 -159.85 REMARK 500 10 ASP A 170 77.47 59.83 REMARK 500 10 PHE A 171 -154.27 78.94 REMARK 500 10 HIS A 172 -127.17 -115.40 REMARK 500 10 ALA A 173 85.43 -67.92 REMARK 500 10 ASP A 175 163.21 -44.57 REMARK 500 10 LYS A 177 -50.11 -168.66 REMARK 500 10 ILE A 180 49.37 84.75 REMARK 500 10 ALA A 182 -174.31 179.84 REMARK 500 10 SER A 189 129.30 176.72 REMARK 500 10 HIS A 206 -70.71 169.10 REMARK 500 10 SER A 207 63.19 150.75 REMARK 500 10 ASN A 211 -167.77 -121.01 REMARK 500 10 LEU A 226 -170.54 78.85 REMARK 500 10 SER A 230 23.59 82.80 REMARK 500 10 PRO A 232 75.83 -60.34 REMARK 500 10 LYS A 233 -33.56 178.42 REMARK 500 10 MET A 236 28.53 -160.10 REMARK 500 10 LYS A 241 121.30 -175.29 REMARK 500 10 ASP A 244 -8.15 79.18 REMARK 500 10 ILE A 245 18.58 81.68 REMARK 500 10 PHE A 248 97.33 -38.09 REMARK 500 11 LYS A 111 121.22 74.29 REMARK 500 11 HIS A 112 -59.57 77.47 REMARK 500 11 ASN A 119 -174.36 -59.59 REMARK 500 11 ASN A 120 48.58 -76.36 REMARK 500 11 TYR A 121 -148.24 48.40 REMARK 500 11 HIS A 168 119.80 179.64 REMARK 500 11 ASP A 170 106.33 -50.52 REMARK 500 11 PHE A 171 75.63 83.58 REMARK 500 11 HIS A 172 59.89 -69.93 REMARK 500 11 ALA A 173 91.14 162.56 REMARK 500 11 PHE A 174 -157.08 -98.97 REMARK 500 11 ASP A 175 -77.52 -72.46 REMARK 500 11 LYS A 177 40.88 160.38 REMARK 500 11 LEU A 181 -80.60 -118.77 REMARK 500 11 SER A 189 -80.08 -117.26 REMARK 500 11 ASP A 194 97.16 -62.83 REMARK 500 11 GLU A 201 -173.87 -58.25 REMARK 500 11 HIS A 206 66.63 65.86 REMARK 500 11 SER A 207 -72.14 -177.98 REMARK 500 11 LEU A 226 -146.33 -89.01 REMARK 500 11 HIS A 228 -96.43 -113.83 REMARK 500 11 SER A 229 -42.58 175.03 REMARK 500 11 SER A 230 24.11 81.87 REMARK 500 11 VAL A 235 47.29 -72.19 REMARK 500 11 MET A 236 -31.94 -144.76 REMARK 500 11 PHE A 237 144.37 -39.11 REMARK 500 11 ASP A 244 115.95 64.03 REMARK 500 11 PHE A 248 93.85 -65.01 REMARK 500 12 LYS A 111 -65.83 -167.48 REMARK 500 12 ASN A 120 35.44 161.98 REMARK 500 12 TYR A 121 -172.22 72.52 REMARK 500 12 ASP A 158 -83.39 -69.43 REMARK 500 12 ALA A 167 -140.03 57.04 REMARK 500 12 PHE A 171 76.69 60.48 REMARK 500 12 ALA A 173 101.92 65.16 REMARK 500 12 PHE A 174 -131.10 -85.89 REMARK 500 12 ASP A 175 -157.42 54.00 REMARK 500 12 LYS A 177 -57.14 172.13 REMARK 500 12 ILE A 180 162.64 74.04 REMARK 500 12 LEU A 181 -57.81 -124.29 REMARK 500 12 PRO A 187 -83.36 -67.96 REMARK 500 12 SER A 189 -172.76 83.59 REMARK 500 12 ASP A 194 147.15 -37.48 REMARK 500 12 ASP A 198 85.40 -60.83 REMARK 500 12 GLU A 201 174.15 -53.19 REMARK 500 12 HIS A 206 42.56 76.78 REMARK 500 12 SER A 207 123.17 81.69 REMARK 500 12 LEU A 224 -75.09 -43.74 REMARK 500 12 LEU A 226 -164.07 50.65 REMARK 500 12 SER A 230 5.38 86.48 REMARK 500 12 MET A 236 -31.80 -179.55 REMARK 500 12 THR A 239 107.57 -48.41 REMARK 500 12 LYS A 241 113.49 174.96 REMARK 500 12 PHE A 248 -156.73 -83.97 REMARK 500 12 ARG A 249 163.37 178.28 REMARK 500 12 LEU A 261 -76.32 -52.57 REMARK 500 13 LYS A 111 -54.32 -127.91 REMARK 500 13 ASN A 119 -86.76 -59.48 REMARK 500 13 ASN A 120 60.75 169.40 REMARK 500 13 THR A 122 -52.67 162.45 REMARK 500 13 PRO A 123 -83.16 -78.71 REMARK 500 13 LEU A 147 90.58 -163.71 REMARK 500 13 THR A 154 -178.75 67.67 REMARK 500 13 MET A 156 113.89 73.63 REMARK 500 13 ALA A 167 50.83 82.54 REMARK 500 13 PHE A 171 -173.29 -177.22 REMARK 500 13 HIS A 172 -135.31 -123.01 REMARK 500 13 ALA A 182 -179.99 -172.89 REMARK 500 13 ASP A 198 91.58 -65.78 REMARK 500 13 GLU A 201 172.02 -55.52 REMARK 500 13 HIS A 206 34.83 70.60 REMARK 500 13 SER A 207 -82.06 -139.11 REMARK 500 13 HIS A 228 -162.21 -73.97 REMARK 500 13 SER A 230 -4.58 85.71 REMARK 500 13 ASP A 244 -11.98 82.32 REMARK 500 13 ILE A 245 14.74 87.54 REMARK 500 13 PHE A 248 103.64 -48.01 REMARK 500 14 ASN A 120 35.49 164.36 REMARK 500 14 TYR A 121 -173.37 80.05 REMARK 500 14 ALA A 167 105.39 68.99 REMARK 500 14 HIS A 168 26.08 -173.74 REMARK 500 14 ASP A 170 17.82 56.71 REMARK 500 14 PHE A 171 133.40 164.35 REMARK 500 14 ALA A 173 132.44 78.20 REMARK 500 14 PHE A 174 -165.79 -117.19 REMARK 500 14 LYS A 177 -35.53 -166.66 REMARK 500 14 ILE A 180 52.69 88.91 REMARK 500 14 PRO A 187 -143.56 -63.53 REMARK 500 14 SER A 189 52.17 77.76 REMARK 500 14 HIS A 206 -48.55 81.65 REMARK 500 14 LEU A 226 -158.93 -81.25 REMARK 500 14 SER A 229 -84.46 -99.11 REMARK 500 14 SER A 230 -30.25 155.81 REMARK 500 14 MET A 236 -34.28 162.06 REMARK 500 14 ASP A 244 33.46 -77.30 REMARK 500 14 ILE A 245 -2.65 82.94 REMARK 500 15 LYS A 111 176.94 60.14 REMARK 500 15 HIS A 112 -84.99 69.27 REMARK 500 15 TYR A 121 82.57 -176.96 REMARK 500 15 THR A 122 -56.28 -171.71 REMARK 500 15 MET A 156 88.59 78.79 REMARK 500 15 ALA A 167 80.90 87.71 REMARK 500 15 HIS A 168 -54.48 -140.29 REMARK 500 15 ASP A 170 -71.68 78.25 REMARK 500 15 PHE A 171 -166.54 -120.50 REMARK 500 15 ALA A 173 -166.98 78.85 REMARK 500 15 PHE A 174 -161.50 -124.11 REMARK 500 15 LYS A 177 90.40 71.66 REMARK 500 15 LEU A 181 -33.94 -38.23 REMARK 500 15 SER A 189 -147.79 -155.02 REMARK 500 15 ASP A 194 102.70 -34.92 REMARK 500 15 HIS A 206 36.73 77.60 REMARK 500 15 SER A 207 -92.22 -138.07 REMARK 500 15 LEU A 226 -156.73 -126.28 REMARK 500 15 HIS A 228 -150.31 -100.28 REMARK 500 15 SER A 230 16.43 83.06 REMARK 500 15 LYS A 241 121.45 169.36 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 6 TYR A 262 0.07 SIDE_CHAIN REMARK 500 8 ASP A 198 0.09 SIDE_CHAIN REMARK 500 13 ASP A 198 0.09 SIDE_CHAIN REMARK 500 15 ASP A 170 0.08 SIDE_CHAIN REMARK 500 15 ASP A 198 0.09 SIDE_CHAIN REMARK 500 REMARK 500 REMARK: NULL
REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 1 ZN A 264 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 218 NE2 REMARK 620 2 HIS A 222 NE2 109.6 REMARK 620 3 HIS A 228 NE2 122.9 95.6 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 1 ZN A 265 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 168 NE2 REMARK 620 2 HIS A 183 NE2 99.7 REMARK 620 3 HIS A 196 ND1 98.5 132.1 REMARK 620 N 1 2
REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 264 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 265 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 266 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 267 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 268 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE HSI A 269
REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1JK3 RELATED DB: PDB REMARK 900 RELATED ID: 1JIZ RELATED DB: PDB REMARK 900 RELATED ID: 1RMZ RELATED DB: PDB REMARK 900 RELATED ID: 1ROS RELATED DB: PDB REMARK 900 RELATED ID: 1YCM RELATED DB: PDB REMARK 900 RELATED ID: 2OXU RELATED DB: PDB
DBREF 2Z2D A 100 263 UNP P39900 MMP12_HUMAN 100 263
SEQRES 1 A 164 PHE ARG GLU MET PRO GLY GLY PRO VAL TRP ARG LYS HIS SEQRES 2 A 164 TYR ILE THR TYR ARG ILE ASN ASN TYR THR PRO ASP MET SEQRES 3 A 164 ASN ARG GLU ASP VAL ASP TYR ALA ILE ARG LYS ALA PHE SEQRES 4 A 164 GLN VAL TRP SER ASN VAL THR PRO LEU LYS PHE SER LYS SEQRES 5 A 164 ILE ASN THR GLY MET ALA ASP ILE LEU VAL VAL PHE ALA SEQRES 6 A 164 ARG GLY ALA HIS GLY ASP PHE HIS ALA PHE ASP GLY LYS SEQRES 7 A 164 GLY GLY ILE LEU ALA HIS ALA PHE GLY PRO GLY SER GLY SEQRES 8 A 164 ILE GLY GLY ASP ALA HIS PHE ASP GLU ASP GLU PHE TRP SEQRES 9 A 164 THR THR HIS SER GLY GLY THR ASN LEU PHE LEU THR ALA SEQRES 10 A 164 VAL HIS GLU ILE GLY HIS SER LEU GLY LEU GLY HIS SER SEQRES 11 A 164 SER ASP PRO LYS ALA VAL MET PHE PRO THR TYR LYS TYR SEQRES 12 A 164 VAL ASP ILE ASN THR PHE ARG LEU SER ALA ASP ASP ILE SEQRES 13 A 164 ARG GLY ILE GLN SER LEU TYR GLY
HET ZN A 264 1 HET ZN A 265 1 HET CA A 266 1 HET CA A 267 1 HET CA A 268 1 HET HSI A 269 53
HETNAM ZN ZINC ION HETNAM CA CALCIUM ION HETNAM HSI (3R)-3-{4-[(4-CHLOROPHENYL)ETHYNYL]BENZOYL}NONANOIC HETNAM 2 HSI ACID
HETSYN HSI (4-(4-(2-(4-CHLOROPHENYL)ETHYNYL)PHENYL))-3-HEXYL-4- HETSYN 2 HSI OXOBUTANOIC ACID
FORMUL 2 ZN 2(ZN 2+) FORMUL 4 CA 3(CA 2+) FORMUL 7 HSI C24 H25 CL O3
HELIX 1 1 ASN A 126 ASN A 143 1 18 HELIX 2 2 ASN A 211 LEU A 224 1 14 HELIX 3 3 SER A 251 TYR A 262 1 12
SHEET 1 A 5 LYS A 148 ILE A 152 0 SHEET 2 A 5 TYR A 113 ILE A 118 1 N TYR A 116 O ILE A 152 SHEET 3 A 5 ILE A 159 ALA A 164 1 O ILE A 159 N THR A 115 SHEET 4 A 5 ALA A 195 ASP A 198 1 O ALA A 195 N VAL A 162 SHEET 5 A 5 ALA A 182 ALA A 184 -1 N HIS A 183 O HIS A 196
LINK ZN ZN A 264 NE2 HIS A 218 1555 1555 1.92 LINK ZN ZN A 264 NE2 HIS A 222 1555 1555 2.04 LINK ZN ZN A 264 NE2 HIS A 228 1555 1555 2.03 LINK ZN ZN A 265 NE2 HIS A 168 1555 1555 2.35 LINK ZN ZN A 265 NE2 HIS A 183 1555 1555 2.08 LINK ZN ZN A 265 ND1 HIS A 196 1555 1555 1.81
SITE 1 AC1 4 HIS A 218 HIS A 222 HIS A 228 MET A 236 SITE 1 AC2 4 HIS A 168 ASP A 170 HIS A 183 HIS A 196 SITE 1 AC3 5 ASP A 175 GLY A 178 ILE A 180 ASP A 198 SITE 2 AC3 5 GLU A 201 SITE 1 AC4 4 ASP A 158 GLY A 190 GLY A 192 ASP A 194 SITE 1 AC5 4 ASP A 124 GLU A 199 GLU A 201 TRP A 203 SITE 1 AC6 13 ILE A 180 LEU A 181 ALA A 182 LEU A 214 SITE 2 AC6 13 HIS A 218 GLU A 219 HIS A 222 PHE A 237 SITE 3 AC6 13 PRO A 238 THR A 239 TYR A 240 LYS A 241 SITE 4 AC6 13 VAL A 243
CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 1.000000 0.000000 0.000000 0.00000
SCALE2 0.000000 1.000000 0.000000 0.00000
SCALE3 0.000000 0.000000 1.000000 0.00000