10 20 30 40 50 60 70 80 2YYK - Header ----|----|----|----|----|----|----|----|----|----|----|----|----|----|----|----| Asymmetric UnitHEADER OXIDOREDUCTASE 30-APR-07 2YYK
TITLE CRYSTAL STRUCTURE OF THE MUTANT OF HPAB (T198I, A276G, AND R466H)
COMPND MOL_ID: 1; COMPND 2 MOLECULE: 4-HYDROXYPHENYLACETATE-3-HYDROXYLASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: 4-HYDROXYPHENYLACETATE 3-MONOOXYGENASE; COMPND 5 EC: 1.14.13.3; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES
SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: THERMUS THERMOPHILUS; SOURCE 3 ORGANISM_TAXID: 300852; SOURCE 4 STRAIN: HB8; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET11A
KEYWDS STRUCTUROME, RIKEN SPRING-8 CENTER, OXYGNASE COMPONENT, 4- KEYWDS 2 HYDROXYPHENYLACETATE 3-MONOOXYGENASE, TWO-COMPONENT FLAVIN KEYWDS 3 DIFFUSIBLE MONOOXYGENASE, MUTANT, UNLIGAND FORM, OXIDOREDUCTASE
EXPDTA X-RAY DIFFRACTION
AUTHOR S.-H.KIM,T.HISANO,K.TAKEDA,W.IWASAKI,A.EBIHARA,K.MIKI
REVDAT 4 13-JUL-11 2YYK 1 VERSN REVDAT 3 24-FEB-09 2YYK 1 VERSN REVDAT 2 20-NOV-07 2YYK 1 JRNL REVDAT 1 04-SEP-07 2YYK 0
JRNL AUTH S.-H.KIM,T.HISANO,K.TAKEDA,W.IWASAKI,A.EBIHARA,K.MIKI JRNL TITL CRYSTAL STRUCTURE OF THE OXYGENASE COMPONENT (HPAB) OF THE JRNL TITL 2 4-HYDROXYPHENYLACETATE 3-MONOOXYGENASE FROM THERMUS JRNL TITL 3 THERMOPHILUS HB8 JRNL REF J.BIOL.CHEM. V. 282 33107 2007 JRNL REFN ISSN 0021-9258 JRNL PMID 17804419 JRNL DOI 10.1074/JBC.M703440200
REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH S.-H.KIM,H.MIYATAKE,T.HISANO,W.IWASAKI,A.EBIHARA,K.MIKI REMARK 1 TITL CRYSTALLIZATION AND PRELIMINARY X-RAY ANALYSIS OF THE REMARK 1 TITL 2 OXYGENASE COMPONENT (HPAB) OF 4-HYDROXYPHENYLACETATE REMARK 1 TITL 3 3-MONOOXYGENASE FROM THERMUS THERMOPHILUS HB8 REMARK 1 REF ACTA CRYSTALLOGR.,SECT.F V. 63 556 2007 REMARK 1 REFN ESSN 1744-3091 REMARK 1 PMID 17620709 REMARK 1 DOI 10.1107/S174430910702492X
REMARK 2 REMARK 2 RESOLUTION. 1.60 ANGSTROMS.
REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.1 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 41.53 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 NUMBER OF REFLECTIONS : 78018 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.195 REMARK 3 FREE R VALUE : 0.203 REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : 3939 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 6 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.60 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.70 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 95.00 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.2325 REMARK 3 BIN FREE R VALUE : 0.2517 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : 630 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3759 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 19 REMARK 3 SOLVENT ATOMS : 400 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 19.10 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 18.20 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -2.05000 REMARK 3 B22 (A**2) : 3.75500 REMARK 3 B33 (A**2) : -1.70500 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.18 REMARK 3 ESD FROM SIGMAA (A) : 0.12 REMARK 3 LOW RESOLUTION CUTOFF (A) : 30.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.18 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.10 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.005 REMARK 3 BOND ANGLES (DEGREES) : 1.20 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 21.60 REMARK 3 IMPROPER ANGLES (DEGREES) : 0.85 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : ISOTROPIC REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : NULL REMARK 3 KSOL : NULL REMARK 3 BSOL : NULL REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL
REMARK 4 REMARK 4 2YYK COMPLIES WITH FORMAT V. 3.30, 13-JUL-11
REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 10-MAY-07. REMARK 100 THE RCSB ID CODE IS RCSB027296.
REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 08-MAR-02; 01-MAR-02 REMARK 200 TEMPERATURE (KELVIN) : 100; 100 REMARK 200 PH : 5.0 REMARK 200 NUMBER OF CRYSTALS USED : 2 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y; Y REMARK 200 RADIATION SOURCE : SPRING-8; SPRING-8 REMARK 200 BEAMLINE : BL45XU; BL45XU REMARK 200 X-RAY GENERATOR MODEL : NULL; NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M; M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9000; 0.9100, 1.0714 REMARK 200 MONOCHROMATOR : DIAMOND; DIAMOND REMARK 200 OPTICS : MIRRORS; MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE; IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU RAXIS V; RIGAKU RAXIS V REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 78027 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.600 REMARK 200 RESOLUTION RANGE LOW (A) : 41.530 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : NULL REMARK 200 DATA REDUNDANCY : 3.910 REMARK 200 R MERGE (I) : 0.05400 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 27.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.60 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.66 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.24500 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH; MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: SHARP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL
REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 55.37 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.76 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.4M 1,6-HEXANEDIOL, 0.1M SODIUM REMARK 280 ACETATE, 25%(V/V) GLYCEROL, PH 5.0, VAPOR DIFFUSION, HANGING REMARK 280 DROP, TEMPERATURE 293K
REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 2 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X,Y,-Z REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z+1/2 REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 45.90950 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 49.80600 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 65.54550 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 45.90950 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 49.80600 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 65.54550 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 45.90950 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 49.80600 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 65.54550 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 45.90950 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 49.80600 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 65.54550 REMARK 290 REMARK 290 REMARK: NULL
REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA.
REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA,PQS REMARK 350 TOTAL BURIED SURFACE AREA: 27990 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 61030 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -213.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 91.81900 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 99.61200 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -1.000000 0.000000 0.000000 91.81900 REMARK 350 BIOMT2 3 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 -1.000000 131.09100 REMARK 350 BIOMT1 4 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 4 0.000000 -1.000000 0.000000 99.61200 REMARK 350 BIOMT3 4 0.000000 0.000000 -1.000000 131.09100
REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 PRO A 154 REMARK 465 PRO A 155 REMARK 465 SER A 156 REMARK 465 GLY A 157 REMARK 465 GLU A 478 REMARK 465 VAL A 479 REMARK 465 GLN A 480 REMARK 465 ALA A 481
REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 15 CG CD NE CZ NH1 NH2 REMARK 470 GLN A 158 CG CD OE1 NE2
REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 1749 O HOH A 1850 2.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 145 134.49 78.46 REMARK 500 PHE A 186 65.67 64.48 REMARK 500 SER A 204 30.55 -94.44 REMARK 500 MET A 246 145.94 75.32 REMARK 500 ALA A 381 -145.06 53.20 REMARK 500 ALA A 409 29.23 -144.11 REMARK 500 THR A 426 -47.08 -136.92 REMARK 500 REMARK 500 REMARK: NULL
REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A1661 DISTANCE = 6.63 ANGSTROMS REMARK 525 HOH A1782 DISTANCE = 5.07 ANGSTROMS REMARK 525 HOH A1786 DISTANCE = 6.47 ANGSTROMS REMARK 525 HOH A1839 DISTANCE = 5.89 ANGSTROMS REMARK 525 HOH A1840 DISTANCE = 5.17 ANGSTROMS REMARK 525 HOH A1846 DISTANCE = 5.99 ANGSTROMS
REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 505 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A1748 O REMARK 620 2 GLU A 226 OE2 78.1 REMARK 620 3 HOH A1750 O 77.4 69.5 REMARK 620 4 HOH A1747 O 163.2 104.3 87.7 REMARK 620 5 HOH A1749 O 85.2 151.4 84.5 85.6 REMARK 620 N 1 2 3 4
REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA A 505 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACY A 500 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACY A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACY A 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 601
REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2YYG RELATED DB: PDB REMARK 900 LIGAND-FREE FORM OF HPAB REMARK 900 RELATED ID: 2YYI RELATED DB: PDB REMARK 900 THE SAME PROTEIN (HPAB) COMPLEXED WITH FAD REMARK 900 RELATED ID: 2YYJ RELATED DB: PDB REMARK 900 THE SAME PROTEIN (HPAB) COMPLEXED WITH FAD AND 4- REMARK 900 HYDROXYPHENYLACETATE REMARK 900 RELATED ID: 2YYL RELATED DB: PDB REMARK 900 THE MUTANT OF HPAB COMPLEXED WITH FAD REMARK 900 RELATED ID: 2YYM RELATED DB: PDB REMARK 900 THE MUTANT OF HPAB COMPLEXED WITH FAD AND 4- REMARK 900 HYDROXYPHENYLACETATE
DBREF 2YYK A 1 481 UNP Q5SJP8 Q5SJP8_THET8 1 481
SEQADV 2YYK ILE A 198 UNP Q5SJP8 THR 198 ENGINEERED SEQADV 2YYK GLY A 276 UNP Q5SJP8 ALA 276 ENGINEERED SEQADV 2YYK HIS A 466 UNP Q5SJP8 ARG 466 ENGINEERED
SEQRES 1 A 481 MET ALA ARG THR GLY ALA GLU TYR ILE GLU ALA LEU LYS SEQRES 2 A 481 THR ARG PRO PRO ASN LEU TRP TYR LYS GLY GLU LYS VAL SEQRES 3 A 481 GLU ASP PRO THR THR HIS PRO VAL PHE ARG GLY ILE VAL SEQRES 4 A 481 ARG THR MET ALA ALA LEU TYR ASP LEU GLN HIS ASP PRO SEQRES 5 A 481 ARG TYR ARG GLU VAL LEU THR TYR GLU GLU GLU GLY LYS SEQRES 6 A 481 ARG HIS GLY MET SER PHE LEU ILE PRO LYS THR LYS GLU SEQRES 7 A 481 ASP LEU LYS ARG ARG GLY GLN ALA TYR LYS LEU TRP ALA SEQRES 8 A 481 ASP GLN ASN LEU GLY MET MET GLY ARG SER PRO ASP TYR SEQRES 9 A 481 LEU ASN ALA VAL VAL MET ALA TYR ALA ALA SER ALA ASP SEQRES 10 A 481 TYR PHE GLY GLU PHE ALA GLU ASN VAL ARG ASN TYR TYR SEQRES 11 A 481 ARG TYR LEU ARG ASP GLN ASP LEU ALA THR THR HIS ALA SEQRES 12 A 481 LEU THR ASN PRO GLN VAL ASN ARG ALA ARG PRO PRO SER SEQRES 13 A 481 GLY GLN PRO ASP PRO TYR ILE PRO VAL GLY VAL VAL LYS SEQRES 14 A 481 GLN THR GLU LYS GLY ILE VAL VAL ARG GLY ALA ARG MET SEQRES 15 A 481 THR ALA THR PHE PRO LEU ALA ASP GLU VAL LEU ILE PHE SEQRES 16 A 481 PRO SER ILE LEU LEU GLN ALA GLY SER GLU LYS TYR ALA SEQRES 17 A 481 LEU ALA PHE ALA LEU PRO THR SER THR PRO GLY LEU HIS SEQRES 18 A 481 PHE VAL CYS ARG GLU ALA LEU VAL GLY GLY ASP SER PRO SEQRES 19 A 481 PHE ASP HIS PRO LEU SER SER ARG VAL GLU GLU MET ASP SEQRES 20 A 481 CYS LEU VAL ILE PHE ASP ASP VAL LEU VAL PRO TRP GLU SEQRES 21 A 481 ARG VAL PHE ILE LEU GLY ASN VAL GLU LEU CYS ASN ASN SEQRES 22 A 481 ALA TYR GLY ALA THR GLY ALA LEU ASN HIS MET ALA HIS SEQRES 23 A 481 GLN VAL VAL ALA LEU LYS THR ALA LYS THR GLU ALA PHE SEQRES 24 A 481 LEU GLY VAL ALA ALA LEU MET ALA GLU GLY ILE GLY ALA SEQRES 25 A 481 ASP VAL TYR GLY HIS VAL GLN GLU LYS ILE ALA GLU ILE SEQRES 26 A 481 ILE VAL TYR LEU GLU ALA MET ARG ALA PHE TRP THR ARG SEQRES 27 A 481 ALA GLU GLU GLU ALA LYS GLU ASN ALA TYR GLY LEU LEU SEQRES 28 A 481 VAL PRO ASP ARG GLY ALA LEU ASP GLY ALA ARG ASN LEU SEQRES 29 A 481 TYR PRO ARG LEU TYR PRO ARG ILE ARG GLU ILE LEU GLU SEQRES 30 A 481 GLN ILE GLY ALA SER GLY LEU ILE THR LEU PRO SER GLU SEQRES 31 A 481 LYS ASP PHE LYS GLY PRO LEU GLY PRO PHE LEU GLU LYS SEQRES 32 A 481 PHE LEU GLN GLY ALA ALA LEU GLU ALA LYS GLU ARG VAL SEQRES 33 A 481 ALA LEU PHE ARG LEU ALA TRP ASP MET THR LEU SER GLY SEQRES 34 A 481 PHE GLY ALA ARG GLN GLU LEU TYR GLU ARG PHE PHE PHE SEQRES 35 A 481 GLY ASP PRO VAL ARG MET TYR GLN THR LEU TYR ASN VAL SEQRES 36 A 481 TYR ASN LYS GLU PRO TYR LYS GLU ARG ILE HIS ALA PHE SEQRES 37 A 481 LEU LYS GLU SER LEU LYS VAL PHE GLU GLU VAL GLN ALA
HET NA A 505 1 HET ACY A 500 4 HET ACY A 501 4 HET ACY A 502 4 HET GOL A 601 6
HETNAM NA SODIUM ION HETNAM ACY ACETIC ACID HETNAM GOL GLYCEROL
HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL
FORMUL 2 NA NA 1+ FORMUL 3 ACY 3(C2 H4 O2) FORMUL 6 GOL C3 H8 O3 FORMUL 7 HOH *400(H2 O)
HELIX 1 1 THR A 4 ARG A 15 1 12 HELIX 2 2 PHE A 35 GLN A 49 1 15 HELIX 3 3 TYR A 54 LEU A 58 1 5 HELIX 4 4 SER A 70 LEU A 72 5 3 HELIX 5 5 THR A 76 ASN A 94 1 19 HELIX 6 6 PRO A 102 SER A 115 1 14 HELIX 7 7 ALA A 116 GLU A 121 5 6 HELIX 8 8 PHE A 122 ASP A 137 1 16 HELIX 9 9 SER A 204 TYR A 207 5 4 HELIX 10 10 ASN A 267 GLY A 279 1 13 HELIX 11 11 GLY A 279 ILE A 310 1 32 HELIX 12 12 GLY A 311 VAL A 314 5 4 HELIX 13 13 TYR A 315 GLU A 342 1 28 HELIX 14 14 ASP A 354 ALA A 381 1 28 HELIX 15 15 SER A 382 ILE A 385 5 4 HELIX 16 16 SER A 389 GLY A 395 1 7 HELIX 17 17 LEU A 397 LEU A 405 1 9 HELIX 18 18 GLU A 411 MET A 425 1 15 HELIX 19 19 SER A 428 PHE A 441 1 14 HELIX 20 20 ASP A 444 TYR A 456 1 13 HELIX 21 21 LYS A 458 LEU A 469 1 12 HELIX 22 22 LEU A 469 LYS A 474 1 6 HELIX 23 23 VAL A 475 GLU A 477 5 3
SHEET 1 A 6 GLU A 24 LYS A 25 0 SHEET 2 A 6 LEU A 19 TYR A 21 -1 N TYR A 21 O GLU A 24 SHEET 3 A 6 LEU A 220 CYS A 224 1 O PHE A 222 N TRP A 20 SHEET 4 A 6 ASP A 247 PRO A 258 -1 O ILE A 251 N HIS A 221 SHEET 5 A 6 GLY A 174 THR A 185 -1 N ILE A 175 O VAL A 257 SHEET 6 A 6 GLY A 166 GLN A 170 -1 N VAL A 168 O VAL A 176 SHEET 1 B 9 GLU A 24 LYS A 25 0 SHEET 2 B 9 LEU A 19 TYR A 21 -1 N TYR A 21 O GLU A 24 SHEET 3 B 9 LEU A 220 CYS A 224 1 O PHE A 222 N TRP A 20 SHEET 4 B 9 ASP A 247 PRO A 258 -1 O ILE A 251 N HIS A 221 SHEET 5 B 9 GLY A 174 THR A 185 -1 N ILE A 175 O VAL A 257 SHEET 6 B 9 THR A 140 LEU A 144 -1 N LEU A 144 O THR A 183 SHEET 7 B 9 GLU A 191 ILE A 194 1 O LEU A 193 N THR A 141 SHEET 8 B 9 LEU A 209 PRO A 214 -1 O PHE A 211 N ILE A 194 SHEET 9 B 9 VAL A 262 LEU A 265 -1 O PHE A 263 N ALA A 210 SHEET 1 C 2 THR A 59 GLU A 62 0 SHEET 2 C 2 LYS A 65 GLY A 68 -1 O LYS A 65 N GLU A 62 SHEET 1 D 2 LYS A 344 GLU A 345 0 SHEET 2 D 2 LEU A 351 VAL A 352 -1 O VAL A 352 N LYS A 344
LINK NA NA A 505 O HOH A1748 1555 1555 2.29 LINK NA NA A 505 OE2 GLU A 226 1555 1555 2.12 LINK NA NA A 505 O HOH A1750 1555 1555 2.04 LINK NA NA A 505 O HOH A1747 1555 1555 2.28 LINK NA NA A 505 O HOH A1749 1555 1555 2.33
SITE 1 AC1 6 GLU A 226 HIS A 237 HOH A1747 HOH A1748 SITE 2 AC1 6 HOH A1749 HOH A1750 SITE 1 AC2 5 ARG A 355 GLY A 356 ASP A 359 LEU A 452 SITE 2 AC2 5 HOH A1784 SITE 1 AC3 8 LEU A 144 THR A 145 ASN A 146 ARG A 181 SITE 2 AC3 8 PRO A 196 SER A 197 ILE A 198 HOH A1576 SITE 1 AC4 2 ARG A 82 HOH A1838 SITE 1 AC5 8 ARG A 225 GLU A 226 LEU A 384 ILE A 385 SITE 2 AC5 8 THR A 386 LEU A 387 ARG A 420 TRP A 423
CRYST1 91.819 99.612 131.091 90.00 90.00 90.00 I 2 2 2 8
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 0.010891 0.000000 0.000000 0.00000
SCALE2 0.000000 0.010039 0.000000 0.00000
SCALE3 0.000000 0.000000 0.007628 0.00000