10 20 30 40 50 60 70 80 2YUZ - Header ----|----|----|----|----|----|----|----|----|----|----|----|----|----|----|----| Asymmetric UnitHEADER IMMUNE SYSTEM 06-APR-07 2YUZ
TITLE SOLUTION STRUCTURE OF 4TH IMMUNOGLOBULIN DOMAIN OF SLOW TITLE 2 TYPE MYOSIN-BINDING PROTEIN C
COMPND MOL_ID: 1; COMPND 2 MOLECULE: MYOSIN-BINDING PROTEIN C, SLOW-TYPE; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: IMMUNOGLOBULIN DOMAIN; COMPND 5 SYNONYM: SLOW MYBP-C, C-PROTEIN, SKELETAL MUSCLE SLOW COMPND 6 ISOFORM; COMPND 7 ENGINEERED: YES
SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: MYBPC1; SOURCE 6 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 7 EXPRESSION_SYSTEM_PLASMID: P050322-01; SOURCE 8 OTHER_DETAILS: CELL-FREE PROTEIN SYNTHESIS
KEYWDS IMMUNOGLOBULIN DOMAIN, SLOW-TYPE MYOSIN-BINDING PROTEIN C, KEYWDS 2 STRUCTURAL GENOMICS, NPPSFA, NATIONAL PROJECT ON PROTEIN KEYWDS 3 STRUCTURAL AND FUNCTIONAL ANALYSES, RIKEN STRUCTURAL KEYWDS 4 GENOMICS/PROTEOMICS INITIATIVE, RSGI, IMMUNE SYSTEM
EXPDTA SOLUTION NMR
NUMMDL 20
AUTHOR T.N.NIRAULA,N.TOCHIO,S.KOSHIBA,M.INOUE,T.KIGAWA,S.YOKOYAMA, AUTHOR 2 RIKEN STRUCTURAL GENOMICS/PROTEOMICS INITIATIVE (RSGI)
REVDAT 2 24-FEB-09 2YUZ 1 VERSN REVDAT 1 08-APR-08 2YUZ 0
JRNL AUTH T.N.NIRAULA,N.TOCHIO,S.KOSHIBA,M.INOUE,T.KIGAWA, JRNL AUTH 2 S.YOKOYAMA JRNL TITL SOLUTION STRUCTURE OF 4TH IMMUNOGLOBULIN DOMAIN OF JRNL TITL 2 SLOW TYPE MYOSIN-BINDING PROTEIN C JRNL REF TO BE PUBLISHED JRNL REFN
REMARK 1
REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE.
REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CYANA 2.0.17 REMARK 3 AUTHORS : GUNTERT, P. REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL
REMARK 4 REMARK 4 2YUZ COMPLIES WITH FORMAT V. 3.15, 01-DEC-08
REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 29-JUN-07. REMARK 100 THE RCSB ID CODE IS RCSB027167.
REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 7.0 REMARK 210 IONIC STRENGTH : 120MM REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1.34MM SAMPLE U-15N, 13C; REMARK 210 20MM D-TRIS-HCL; 100MM NACL; REMARK 210 1MM D-DTT; 0.02% NAN3; 90% REMARK 210 H2O, 10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_13C-SEPARATED_NOESY, 3D_ REMARK 210 15N-SEPARATED_NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 900 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : XWINNMR 3.5, NMRPIPE REMARK 210 20030801, NMRVIEW 5.0.4, REMARK 210 KUJIRA 0.9820, CYANA 2.0.17 REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LEAST REMARK 210 RESTRAINT VIOLATIONS, TARGET REMARK 210 FUNCTION REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL
REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS.
REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 SER A 3 -51.11 -123.62 REMARK 500 1 LYS A 23 158.40 -43.11 REMARK 500 1 SER A 32 46.00 -80.30 REMARK 500 1 ARG A 59 44.01 -108.13 REMARK 500 1 ALA A 68 96.04 -60.83 REMARK 500 2 LEU A 21 142.82 -35.73 REMARK 500 2 LYS A 23 164.47 -45.44 REMARK 500 2 ASN A 34 75.93 -109.72 REMARK 500 2 ASP A 50 -33.91 -35.56 REMARK 500 2 SER A 95 114.30 -164.22 REMARK 500 2 PRO A 97 97.44 -69.80 REMARK 500 3 LYS A 23 177.69 -53.73 REMARK 500 3 SER A 32 46.35 -93.95 REMARK 500 3 ASN A 42 42.68 36.12 REMARK 500 3 SER A 99 112.29 -163.89 REMARK 500 4 SER A 2 -62.69 -108.98 REMARK 500 4 SER A 5 39.03 -87.18 REMARK 500 4 LYS A 23 178.45 -56.53 REMARK 500 4 ASP A 50 -36.97 -35.72 REMARK 500 5 LEU A 21 132.15 -35.03 REMARK 500 5 ASN A 34 75.39 -117.03 REMARK 500 5 ALA A 68 79.81 -68.14 REMARK 500 5 VAL A 85 150.28 -35.34 REMARK 500 5 PRO A 97 1.77 -69.78 REMARK 500 6 SER A 3 39.91 -86.24 REMARK 500 6 LEU A 11 -61.46 -95.46 REMARK 500 6 ASP A 16 142.47 -34.57 REMARK 500 6 LYS A 23 171.31 -55.83 REMARK 500 6 ASN A 34 78.92 -108.00 REMARK 500 6 ASN A 42 40.04 37.23 REMARK 500 6 ASP A 50 -30.07 -37.43 REMARK 500 7 LYS A 9 77.97 -112.84 REMARK 500 7 LEU A 11 -64.02 -94.43 REMARK 500 7 LEU A 14 173.23 -52.43 REMARK 500 7 ASP A 16 131.04 -38.27 REMARK 500 7 SER A 32 36.32 -97.24 REMARK 500 7 ASN A 34 53.93 -104.91 REMARK 500 7 ASN A 42 35.64 38.88 REMARK 500 7 PRO A 45 95.93 -69.77 REMARK 500 7 SER A 98 147.80 -36.72 REMARK 500 8 ASP A 16 134.53 -37.08 REMARK 500 8 ASN A 20 174.86 -58.31 REMARK 500 8 SER A 32 45.69 -93.05 REMARK 500 8 ASN A 34 51.21 -115.10 REMARK 500 8 ASN A 42 40.22 35.88 REMARK 500 8 ASN A 84 50.41 -113.32 REMARK 500 9 SER A 32 48.54 -83.54 REMARK 500 9 ASN A 42 40.22 37.14 REMARK 500 9 GLU A 73 109.99 -58.76 REMARK 500 9 ASN A 84 67.32 -114.47 REMARK 500 9 PRO A 97 98.94 -69.73 REMARK 500 10 SER A 2 153.67 -39.10 REMARK 500 10 SER A 5 127.19 -172.59 REMARK 500 10 LYS A 9 73.84 -102.11 REMARK 500 10 LYS A 23 168.56 -46.68 REMARK 500 10 ASN A 34 72.34 -114.72 REMARK 500 10 ASN A 42 38.35 39.62 REMARK 500 10 ALA A 79 116.60 -163.73 REMARK 500 10 SER A 98 155.84 -48.94 REMARK 500 10 SER A 99 -60.89 -90.92 REMARK 500 11 ILE A 10 107.35 -56.63 REMARK 500 11 SER A 32 44.53 -91.54 REMARK 500 11 ASN A 34 62.30 -109.24 REMARK 500 11 ASN A 42 42.41 35.28 REMARK 500 11 ARG A 59 46.53 -105.36 REMARK 500 11 ALA A 68 84.76 -68.34 REMARK 500 12 SER A 3 101.42 -58.18 REMARK 500 12 LEU A 14 144.90 -36.93 REMARK 500 12 SER A 32 45.90 -107.40 REMARK 500 12 GLU A 33 122.11 -170.09 REMARK 500 12 ALA A 68 98.36 -63.55 REMARK 500 13 SER A 5 39.88 39.93 REMARK 500 13 LEU A 21 144.54 -38.48 REMARK 500 13 ILE A 25 150.04 -45.28 REMARK 500 13 SER A 32 30.64 -90.04 REMARK 500 13 ASN A 42 35.82 37.86 REMARK 500 13 ALA A 66 -71.32 -54.09 REMARK 500 14 SER A 6 45.90 -102.10 REMARK 500 14 LEU A 8 139.67 -35.12 REMARK 500 14 LYS A 23 166.93 -48.85 REMARK 500 14 ASN A 34 75.00 -109.15 REMARK 500 15 LEU A 14 160.11 -46.28 REMARK 500 15 ASN A 34 74.23 -118.24 REMARK 500 15 ASN A 42 39.85 37.99 REMARK 500 15 ALA A 68 85.44 -61.75 REMARK 500 16 SER A 6 -64.32 -102.96 REMARK 500 16 ILE A 25 155.42 -39.36 REMARK 500 16 SER A 32 42.09 -103.61 REMARK 500 16 ASN A 34 61.27 -111.64 REMARK 500 16 ASN A 42 44.78 34.97 REMARK 500 16 ARG A 59 38.96 -95.10 REMARK 500 16 ASN A 84 55.63 -113.28 REMARK 500 17 LYS A 23 155.24 -43.07 REMARK 500 17 SER A 32 43.72 -85.00 REMARK 500 17 ASN A 34 65.21 -105.98 REMARK 500 17 ASN A 42 41.21 37.28 REMARK 500 17 ALA A 68 97.81 -67.95 REMARK 500 17 PRO A 97 83.38 -69.79 REMARK 500 17 SER A 98 90.55 -68.52 REMARK 500 18 ASN A 34 76.52 -105.06 REMARK 500 18 ASN A 42 40.30 35.86 REMARK 500 18 GLU A 73 169.03 -49.86 REMARK 500 18 SER A 99 159.33 -47.00 REMARK 500 19 ASN A 20 170.19 -55.61 REMARK 500 19 LYS A 23 -179.54 -58.95 REMARK 500 19 SER A 32 39.15 -91.14 REMARK 500 19 GLU A 48 157.11 -47.36 REMARK 500 19 ARG A 59 41.63 -101.84 REMARK 500 20 SER A 2 93.32 -58.37 REMARK 500 20 LYS A 9 79.92 -118.13 REMARK 500 20 ILE A 10 98.68 -42.29 REMARK 500 20 LYS A 23 -175.77 -67.67 REMARK 500 20 SER A 32 48.85 -100.04 REMARK 500 20 ASN A 42 42.47 36.01 REMARK 500 20 GLU A 48 156.56 -41.65 REMARK 500 20 ALA A 82 -32.84 -130.86 REMARK 500 20 SER A 98 109.62 -36.02 REMARK 500 REMARK 500 REMARK: NULL
REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: HSO002000567.5 RELATED DB: TARGETDB
REMARK 999 REMARK 999 SEQUENCE REMARK 999 SWISSPROT IS VARIANT AT THIS POSITION
DBREF 2YUZ A 8 94 UNP Q00872 MYPC1_HUMAN 433 519
SEQADV 2YUZ GLY A 1 UNP Q00872 EXPRESSION TAG SEQADV 2YUZ SER A 2 UNP Q00872 EXPRESSION TAG SEQADV 2YUZ SER A 3 UNP Q00872 EXPRESSION TAG SEQADV 2YUZ GLY A 4 UNP Q00872 EXPRESSION TAG SEQADV 2YUZ SER A 5 UNP Q00872 EXPRESSION TAG SEQADV 2YUZ SER A 6 UNP Q00872 EXPRESSION TAG SEQADV 2YUZ GLY A 7 UNP Q00872 EXPRESSION TAG SEQADV 2YUZ GLN A 56 UNP Q00872 HIS 481 SEE REMARK 999 SEQADV 2YUZ SER A 95 UNP Q00872 EXPRESSION TAG SEQADV 2YUZ GLY A 96 UNP Q00872 EXPRESSION TAG SEQADV 2YUZ PRO A 97 UNP Q00872 EXPRESSION TAG SEQADV 2YUZ SER A 98 UNP Q00872 EXPRESSION TAG SEQADV 2YUZ SER A 99 UNP Q00872 EXPRESSION TAG SEQADV 2YUZ GLY A 100 UNP Q00872 EXPRESSION TAG
SEQRES 1 A 100 GLY SER SER GLY SER SER GLY LEU LYS ILE LEU THR PRO SEQRES 2 A 100 LEU THR ASP GLN THR VAL ASN LEU GLY LYS GLU ILE CYS SEQRES 3 A 100 LEU LYS CYS GLU ILE SER GLU ASN ILE PRO GLY LYS TRP SEQRES 4 A 100 THR LYS ASN GLY LEU PRO VAL GLN GLU SER ASP ARG LEU SEQRES 5 A 100 LYS VAL VAL GLN LYS GLY ARG ILE HIS LYS LEU VAL ILE SEQRES 6 A 100 ALA ASN ALA LEU THR GLU ASP GLU GLY ASP TYR VAL PHE SEQRES 7 A 100 ALA PRO ASP ALA TYR ASN VAL THR LEU PRO ALA LYS VAL SEQRES 8 A 100 HIS VAL ILE SER GLY PRO SER SER GLY
HELIX 1 1 LEU A 69 GLU A 73 5 5
SHEET 1 A 5 GLN A 17 ASN A 20 0 SHEET 2 A 5 LEU A 87 ILE A 94 1 O LYS A 90 N GLN A 17 SHEET 3 A 5 ASP A 75 PRO A 80 -1 N PHE A 78 O LEU A 87 SHEET 4 A 5 GLY A 37 LYS A 41 -1 N LYS A 38 O ALA A 79 SHEET 5 A 5 LEU A 44 PRO A 45 -1 O LEU A 44 N LYS A 41 SHEET 1 B 3 LEU A 27 GLU A 30 0 SHEET 2 B 3 ILE A 60 ILE A 65 -1 O HIS A 61 N CYS A 29 SHEET 3 B 3 LEU A 52 GLN A 56 -1 N VAL A 55 O LYS A 62
CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 1.000000 0.000000 0.000000 0.00000
SCALE2 0.000000 1.000000 0.000000 0.00000
SCALE3 0.000000 0.000000 1.000000 0.00000