10 20 30 40 50 60 70 80 2YUL - Header ----|----|----|----|----|----|----|----|----|----|----|----|----|----|----|----| Asymmetric Unit
HEADER TRANSCRIPTION 06-APR-07 2YUL
TITLE SOLUTION STRUCTURE OF THE HMG BOX OF HUMAN TRANSCRIPTION TITLE 2 FACTOR SOX-17
COMPND MOL_ID: 1; COMPND 2 MOLECULE: TRANSCRIPTION FACTOR SOX-17; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: HMG (HIGH MOBILITY GROUP) BOX; COMPND 5 ENGINEERED: YES
SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: SOX17; SOURCE 6 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 7 EXPRESSION_SYSTEM_PLASMID: P051003-07; SOURCE 8 OTHER_DETAILS: CELL-FREE PROTEIN SYNTHESIS
KEYWDS TRANSCRIPTION, STRUCTURAL GENOMICS, NPPSFA, NATIONAL KEYWDS 2 PROJECT ON PROTEIN STRUCTURAL AND FUNCTIONAL ANALYSES, KEYWDS 3 RIKEN STRUCTURAL GENOMICS/PROTEOMICS INITIATIVE, RSGI
EXPDTA SOLUTION NMR
NUMMDL 20
AUTHOR H.ABE,N.TOCHIO,K.MIYAMOTO,S.KOSHIBA,M.INOUE,T.KIGAWA, AUTHOR 2 S.YOKOYAMA,RIKEN STRUCTURAL GENOMICS/PROTEOMICS INITIATIVE AUTHOR 3 (RSGI)
REVDAT 2 24-FEB-09 2YUL 1 VERSN REVDAT 1 08-APR-08 2YUL 0
JRNL AUTH H.ABE,N.TOCHIO,K.MIYAMOTO,S.KOSHIBA,M.INOUE, JRNL AUTH 2 T.KIGAWA,S.YOKOYAMA JRNL TITL SOLUTION STRUCTURE OF THE HMG BOX OF HUMAN JRNL TITL 2 TRANSCRIPTION FACTOR SOX-17 JRNL REF TO BE PUBLISHED JRNL REFN
REMARK 1
REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE.
REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CYANA 2.0.17 REMARK 3 AUTHORS : GUNTERT, P. REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL
REMARK 4 REMARK 4 2YUL COMPLIES WITH FORMAT V. 3.15, 01-DEC-08
REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 03-JUL-07. REMARK 100 THE RCSB ID CODE IS RCSB027153.
REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 296 REMARK 210 PH : 7.0 REMARK 210 IONIC STRENGTH : 120MM REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1.1MM PROTEIN; 20MM D-TRIS- REMARK 210 HCL; 100MM NACL; 1MM D-DTT; REMARK 210 0.02% NAN3; 90% H2O, 10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_15N-SEPARATED_NOESY, 3D_ REMARK 210 13C-SEPARATED_NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 900 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : TOPSPIN 1.3, NMRPIPE REMARK 210 20031121, NMNMRVIEW 5.0.4, REMARK 210 KUJIRA 0.9747, CYANA 2.0.17 REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LEAST REMARK 210 RESTRAINT VIOLATIONS, TARGET REMARK 210 FUNCTION REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL
REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS.
REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 VAL A 17 -70.68 -50.13 REMARK 500 1 LYS A 20 -33.69 -34.73 REMARK 500 1 ALA A 36 -38.87 -34.29 REMARK 500 1 LYS A 40 -33.94 -35.15 REMARK 500 1 LEU A 49 159.30 -49.39 REMARK 500 1 PRO A 73 4.00 -69.75 REMARK 500 1 ASN A 74 49.81 -75.81 REMARK 500 1 TYR A 75 -52.51 -127.33 REMARK 500 1 LYS A 76 119.01 -174.93 REMARK 500 1 PRO A 79 -173.88 -69.76 REMARK 500 2 PRO A 11 -170.37 -69.82 REMARK 500 2 ASN A 35 -71.40 -33.51 REMARK 500 2 LYS A 40 -31.39 -36.74 REMARK 500 2 PRO A 73 79.88 -69.78 REMARK 500 2 ASN A 74 -34.31 -135.02 REMARK 500 2 TYR A 75 161.56 -42.06 REMARK 500 2 LYS A 76 177.73 -50.94 REMARK 500 3 SER A 5 118.06 -169.38 REMARK 500 3 LYS A 20 -35.38 -36.02 REMARK 500 3 ASN A 35 -70.31 -34.55 REMARK 500 3 ALA A 36 -38.41 -34.27 REMARK 500 3 LYS A 40 -31.11 -38.44 REMARK 500 3 LEU A 49 155.95 -42.64 REMARK 500 3 LEU A 64 -63.32 -90.54 REMARK 500 3 TYR A 75 156.72 -38.96 REMARK 500 3 LYS A 76 103.90 -49.11 REMARK 500 4 ALA A 36 -38.15 -38.31 REMARK 500 4 LYS A 40 -30.94 -36.96 REMARK 500 4 PRO A 73 0.47 -69.77 REMARK 500 4 TYR A 75 156.75 -47.65 REMARK 500 5 LYS A 20 -35.13 -34.33 REMARK 500 5 ASN A 35 -70.23 -33.63 REMARK 500 5 ALA A 36 -39.87 -34.21 REMARK 500 5 LYS A 40 -32.05 -35.37 REMARK 500 5 PRO A 73 3.09 -69.68 REMARK 500 5 SER A 77 131.27 -174.95 REMARK 500 5 SER A 80 92.50 -40.43 REMARK 500 6 PRO A 11 -177.21 -69.71 REMARK 500 6 LYS A 20 -34.64 -36.44 REMARK 500 6 ASN A 35 -70.38 -33.83 REMARK 500 6 ALA A 36 -39.80 -34.75 REMARK 500 6 LYS A 40 -30.86 -35.75 REMARK 500 6 TYR A 75 170.72 -44.93 REMARK 500 6 PRO A 79 86.12 -69.80 REMARK 500 7 SER A 2 82.26 -67.23 REMARK 500 7 SER A 3 41.85 34.63 REMARK 500 7 LYS A 20 -32.84 -39.61 REMARK 500 7 ALA A 36 -38.61 -35.37 REMARK 500 7 LYS A 40 -31.54 -37.12 REMARK 500 7 LYS A 76 104.96 -172.91 REMARK 500 8 SER A 3 154.23 -37.85 REMARK 500 8 PRO A 11 -171.52 -69.72 REMARK 500 8 LYS A 20 -32.53 -39.92 REMARK 500 8 ASN A 35 -70.00 -33.98 REMARK 500 8 ALA A 36 -39.53 -34.33 REMARK 500 8 LYS A 40 -30.54 -36.71 REMARK 500 8 LEU A 49 152.16 -46.39 REMARK 500 8 GLU A 60 -64.79 -91.09 REMARK 500 8 PRO A 73 4.54 -69.74 REMARK 500 8 ASN A 74 48.04 -75.70 REMARK 500 8 TYR A 75 -51.56 -134.19 REMARK 500 8 LYS A 76 105.51 -167.38 REMARK 500 8 SER A 77 119.91 -164.12 REMARK 500 8 SER A 81 39.96 37.75 REMARK 500 9 ASN A 35 -70.09 -34.58 REMARK 500 9 ALA A 36 -38.38 -33.73 REMARK 500 9 TYR A 75 169.85 -46.38 REMARK 500 9 SER A 81 48.74 37.40 REMARK 500 10 SER A 2 36.55 35.84 REMARK 500 10 SER A 6 -64.38 -92.72 REMARK 500 10 ALA A 36 -38.51 -34.39 REMARK 500 10 LYS A 40 -31.76 -36.70 REMARK 500 10 PRO A 73 5.20 -69.79 REMARK 500 10 ASN A 74 -70.39 -51.08 REMARK 500 10 LYS A 76 127.83 -178.62 REMARK 500 11 ASN A 35 -70.37 -33.24 REMARK 500 11 ALA A 36 -39.81 -34.83 REMARK 500 11 LYS A 40 -34.24 -35.08 REMARK 500 11 PRO A 73 0.81 -69.76 REMARK 500 11 SER A 80 142.31 -170.00 REMARK 500 12 LYS A 20 -36.83 -38.48 REMARK 500 12 ALA A 36 -37.61 -33.60 REMARK 500 12 PRO A 73 2.75 -69.75 REMARK 500 12 PRO A 79 2.89 -69.71 REMARK 500 13 VAL A 17 -70.90 -43.77 REMARK 500 13 LYS A 20 -34.99 -36.84 REMARK 500 13 ASN A 35 -72.78 -32.56 REMARK 500 13 LYS A 40 -30.99 -36.23 REMARK 500 13 PRO A 73 0.10 -69.76 REMARK 500 14 LYS A 20 -36.60 -38.81 REMARK 500 14 ALA A 36 -36.20 -34.05 REMARK 500 14 GLU A 60 -60.60 -94.35 REMARK 500 14 HIS A 68 -26.10 -39.67 REMARK 500 14 PRO A 73 3.83 -69.72 REMARK 500 14 LYS A 76 147.50 -176.45 REMARK 500 14 SER A 77 106.15 -174.62 REMARK 500 15 ASN A 35 -70.11 -35.18 REMARK 500 15 ALA A 36 -37.47 -34.39 REMARK 500 15 LYS A 40 -32.07 -36.49 REMARK 500 15 TYR A 75 -175.95 -54.53 REMARK 500 16 LYS A 20 -33.95 -35.98 REMARK 500 16 ASN A 35 -72.11 -32.75 REMARK 500 16 LYS A 40 -30.92 -36.98 REMARK 500 16 GLU A 60 -60.94 -95.86 REMARK 500 16 PRO A 73 3.55 -69.74 REMARK 500 16 ASN A 74 -35.39 -37.15 REMARK 500 17 PRO A 11 -176.93 -69.84 REMARK 500 17 LYS A 20 -34.28 -35.06 REMARK 500 17 ASP A 21 -61.35 -92.20 REMARK 500 17 ASN A 35 -70.02 -34.20 REMARK 500 17 ALA A 36 -39.18 -34.14 REMARK 500 17 LYS A 40 -30.83 -36.63 REMARK 500 17 PRO A 73 6.60 -69.74 REMARK 500 17 LYS A 76 141.72 -34.13 REMARK 500 17 SER A 80 115.71 -37.10 REMARK 500 18 SER A 5 126.57 -37.40 REMARK 500 18 SER A 6 40.93 -97.04 REMARK 500 18 LYS A 20 -33.31 -34.20 REMARK 500 18 ASN A 35 -70.22 -34.13 REMARK 500 18 LYS A 40 -30.90 -35.88 REMARK 500 18 PRO A 73 78.33 -69.71 REMARK 500 18 ASN A 74 -51.43 -128.42 REMARK 500 18 LYS A 76 -69.00 -132.39 REMARK 500 19 ALA A 36 -39.81 -36.19 REMARK 500 19 LYS A 40 -29.80 -38.34 REMARK 500 19 LYS A 76 129.70 -172.40 REMARK 500 20 PRO A 11 -174.10 -69.77 REMARK 500 20 ALA A 36 -39.02 -35.87 REMARK 500 20 LYS A 40 -31.26 -35.89 REMARK 500 20 VAL A 66 -38.94 -38.55 REMARK 500 20 HIS A 68 -28.28 -38.60 REMARK 500 20 PRO A 73 1.02 -69.69 REMARK 500 REMARK 500 REMARK: NULL
REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: HSO002002627.1 RELATED DB: TARGETDB
DBREF 2YUL A 8 76 UNP Q9H6I2 SOX17_HUMAN 68 136
SEQADV 2YUL GLY A 1 UNP Q9H6I2 EXPRESSION TAG SEQADV 2YUL SER A 2 UNP Q9H6I2 EXPRESSION TAG SEQADV 2YUL SER A 3 UNP Q9H6I2 EXPRESSION TAG SEQADV 2YUL GLY A 4 UNP Q9H6I2 EXPRESSION TAG SEQADV 2YUL SER A 5 UNP Q9H6I2 EXPRESSION TAG SEQADV 2YUL SER A 6 UNP Q9H6I2 EXPRESSION TAG SEQADV 2YUL GLY A 7 UNP Q9H6I2 EXPRESSION TAG SEQADV 2YUL SER A 77 UNP Q9H6I2 EXPRESSION TAG SEQADV 2YUL GLY A 78 UNP Q9H6I2 EXPRESSION TAG SEQADV 2YUL PRO A 79 UNP Q9H6I2 EXPRESSION TAG SEQADV 2YUL SER A 80 UNP Q9H6I2 EXPRESSION TAG SEQADV 2YUL SER A 81 UNP Q9H6I2 EXPRESSION TAG SEQADV 2YUL GLY A 82 UNP Q9H6I2 EXPRESSION TAG
SEQRES 1 A 82 GLY SER SER GLY SER SER GLY ILE ARG ARG PRO MET ASN SEQRES 2 A 82 ALA PHE MET VAL TRP ALA LYS ASP GLU ARG LYS ARG LEU SEQRES 3 A 82 ALA GLN GLN ASN PRO ASP LEU HIS ASN ALA GLU LEU SER SEQRES 4 A 82 LYS MET LEU GLY LYS SER TRP LYS ALA LEU THR LEU ALA SEQRES 5 A 82 GLU LYS ARG PRO PHE VAL GLU GLU ALA GLU ARG LEU ARG SEQRES 6 A 82 VAL GLN HIS MET GLN ASP HIS PRO ASN TYR LYS SER GLY SEQRES 7 A 82 PRO SER SER GLY
HELIX 1 1 ASN A 13 ASN A 30 1 18 HELIX 2 2 HIS A 34 LEU A 49 1 16 HELIX 3 3 THR A 50 ASP A 71 1 22
CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 1.000000 0.000000 0.000000 0.00000
SCALE2 0.000000 1.000000 0.000000 0.00000
SCALE3 0.000000 0.000000 1.000000 0.00000