10 20 30 40 50 60 70 80 2YT7 - Header ----|----|----|----|----|----|----|----|----|----|----|----|----|----|----|----| Asymmetric UnitHEADER PROTEIN TRANSPORT 05-APR-07 2YT7
TITLE SOLUTION STRUCTURE OF THE PDZ DOMAIN OF AMYLOID BETA A4 TITLE 2 PRECURSOR PROTEIN-BINDING FAMILY A MEMBER 3
COMPND MOL_ID: 1; COMPND 2 MOLECULE: AMYLOID BETA A4 PRECURSOR PROTEIN-BINDING FAMILY COMPND 3 A MEMBER 3; COMPND 4 CHAIN: A; COMPND 5 FRAGMENT: PDZ DOMAIN; COMPND 6 SYNONYM: NEURON-SPECIFIC X11L2 PROTEIN, NEURONAL MUNC18-1- COMPND 7 INTERACTING PROTEIN 3, MINT-3, ADAPTER PROTEIN X11GAMMA; COMPND 8 ENGINEERED: YES
SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: APBA3; SOURCE 6 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 7 EXPRESSION_SYSTEM_PLASMID: P061127-21; SOURCE 8 OTHER_DETAILS: CELL-FREE PROTEIN SYNTHESIS
KEYWDS NMR, PDZ DOMAIN,AMYLOID BETA A4 PRECURSOR PROTEIN-BINDING KEYWDS 2 FAMILY A MEMBER 3, NEURON-SPECIFIC X11L2 PROTEIN, NEURONAL KEYWDS 3 MUNC18-1-INTERACTING PROTEIN 3, MINT-3, ADAPTER PROTEIN KEYWDS 4 X11GAMMA, STRUCTURAL GENOMICS, NPPSFA, NATIONAL PROJECT ON KEYWDS 5 PROTEIN STRUCTURAL AND FUNCTIONAL ANALYSES, RIKEN KEYWDS 6 STRUCTURAL GENOMICS/PROTEOMICS INITIATIVE, RSGI, PROTEIN KEYWDS 7 TRANSPORT
EXPDTA SOLUTION NMR
NUMMDL 20
AUTHOR W.DANG,Y.MUTO,M.INOUE,T.KIGAWA,M.SHIROUZU,T.TARADA,M.SEIKI, AUTHOR 2 S.YOKOYAMA,RIKEN STRUCTURAL GENOMICS/PROTEOMICS INITIATIVE AUTHOR 3 (RSGI)
REVDAT 2 24-FEB-09 2YT7 1 VERSN REVDAT 1 15-APR-08 2YT7 0
JRNL AUTH W.DANG,Y.MUTO,M.INOUE,T.KIGAWA,M.SHIROUZU,T.TARADA, JRNL AUTH 2 M.SEIKI,S.YOKOYAMA JRNL TITL SOLUTION STRUCTURE OF THE PDZ DOMAIN OF AMYLOID JRNL TITL 2 BETA A4 PRECURSOR PROTEIN-BINDING FAMILY A MEMBER 3 JRNL REF TO BE PUBLISHED JRNL REFN
REMARK 1
REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE.
REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CYANA 2.0.17 REMARK 3 AUTHORS : GUNTERT, P. REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL
REMARK 4 REMARK 4 2YT7 COMPLIES WITH FORMAT V. 3.15, 01-DEC-08
REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 25-JUN-07. REMARK 100 THE RCSB ID CODE IS RCSB027103.
REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 7.0 REMARK 210 IONIC STRENGTH : 120MM REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1.0MM 13C, 15N-LABELED REMARK 210 PROTEIN; 20MM D-TRIS-HCL (PH REMARK 210 7.0); 100MM NACL; 1MM D-DTT; REMARK 210 0.02% NAN3; 90% H2O, 10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_13C-SEPARATED_NOESY, 3D_ REMARK 210 15N-SEPARATED_NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : XWINNMR 3.5, NMRPIPE REMARK 210 20030801, NMRVIEW 5.0.4, REMARK 210 KUJIRA 0.9820, CYANA 2.0.17 REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LEAST REMARK 210 RESTRAINT VIOLATIONS, REMARK 210 STRUCTURES WITH THE LOWEST REMARK 210 ENERGY,TARGET FUNCTION REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL
REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS.
REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 SER A 6 98.53 -59.69 REMARK 500 1 TRP A 32 140.03 -39.20 REMARK 500 1 SER A 34 -54.38 -133.51 REMARK 500 1 HIS A 46 86.39 -54.94 REMARK 500 1 ASP A 60 145.84 -35.45 REMARK 500 1 SER A 69 99.80 -49.87 REMARK 500 1 HIS A 97 77.90 -113.06 REMARK 500 1 PRO A 100 94.83 -69.73 REMARK 500 2 ARG A 19 117.84 -38.42 REMARK 500 2 LEU A 23 -38.83 -36.84 REMARK 500 2 TRP A 32 115.53 -36.44 REMARK 500 2 LEU A 35 -175.29 -63.78 REMARK 500 2 HIS A 46 85.79 -57.44 REMARK 500 2 SER A 69 100.07 -45.52 REMARK 500 2 HIS A 97 168.41 -49.83 REMARK 500 3 ASN A 9 80.01 -67.91 REMARK 500 3 HIS A 46 99.03 -49.09 REMARK 500 3 ASN A 66 26.45 45.99 REMARK 500 3 THR A 68 95.33 -69.53 REMARK 500 3 VAL A 71 105.50 -37.97 REMARK 500 4 LEU A 23 -36.10 -39.79 REMARK 500 4 SER A 34 42.14 -91.39 REMARK 500 4 LEU A 35 -62.52 -99.70 REMARK 500 4 HIS A 46 91.99 -50.64 REMARK 500 4 THR A 68 99.57 -62.75 REMARK 500 4 HIS A 97 110.93 -37.53 REMARK 500 5 SER A 6 169.46 -49.66 REMARK 500 5 ARG A 19 118.95 -34.99 REMARK 500 5 HIS A 46 88.13 -50.11 REMARK 500 5 THR A 85 -36.73 -39.33 REMARK 500 6 ASP A 8 176.46 -48.46 REMARK 500 6 ARG A 19 116.32 -34.45 REMARK 500 6 SER A 34 55.48 -96.99 REMARK 500 6 LEU A 36 155.78 -36.70 REMARK 500 6 HIS A 46 100.13 -55.36 REMARK 500 6 ARG A 52 -34.82 -38.79 REMARK 500 6 SER A 69 105.54 -55.14 REMARK 500 6 VAL A 71 105.60 -54.27 REMARK 500 7 SER A 5 32.85 -84.72 REMARK 500 7 TRP A 32 -26.53 -38.73 REMARK 500 7 LEU A 35 -72.14 -51.84 REMARK 500 7 HIS A 46 87.86 -52.92 REMARK 500 7 ILE A 58 126.88 -34.10 REMARK 500 7 ASP A 60 137.56 -35.65 REMARK 500 7 ASN A 66 25.77 48.74 REMARK 500 8 SER A 5 108.01 -37.85 REMARK 500 8 ARG A 19 118.76 -33.79 REMARK 500 8 LEU A 23 -37.66 -38.74 REMARK 500 8 HIS A 46 99.01 -55.38 REMARK 500 9 ARG A 19 113.13 -35.43 REMARK 500 9 HIS A 46 92.98 -54.26 REMARK 500 9 ASP A 60 125.59 -34.58 REMARK 500 9 SER A 69 92.49 -51.98 REMARK 500 10 SER A 5 136.15 -171.79 REMARK 500 10 ARG A 19 114.13 -35.06 REMARK 500 10 TRP A 32 170.48 -49.97 REMARK 500 10 HIS A 46 99.46 -47.00 REMARK 500 10 ILE A 58 134.38 -39.06 REMARK 500 10 ASP A 60 134.87 -34.89 REMARK 500 11 ASP A 8 -60.51 -109.98 REMARK 500 11 LEU A 23 -33.65 -34.02 REMARK 500 11 HIS A 46 96.98 -51.19 REMARK 500 11 THR A 68 79.43 -66.93 REMARK 500 12 SER A 34 77.59 -69.48 REMARK 500 12 LEU A 45 98.69 -68.81 REMARK 500 12 HIS A 46 84.92 -55.21 REMARK 500 12 ASP A 60 147.71 -39.97 REMARK 500 13 ARG A 19 123.95 -34.19 REMARK 500 13 LEU A 23 -35.89 -36.27 REMARK 500 13 TRP A 32 -177.99 -58.70 REMARK 500 13 SER A 34 -71.14 -124.50 REMARK 500 13 HIS A 46 88.65 -51.33 REMARK 500 13 HIS A 97 63.03 -109.96 REMARK 500 14 LEU A 23 -36.46 -35.19 REMARK 500 14 TRP A 32 36.49 -94.62 REMARK 500 14 HIS A 46 106.21 -49.31 REMARK 500 14 ASP A 60 146.22 -39.34 REMARK 500 14 HIS A 97 123.67 -38.89 REMARK 500 15 SER A 2 102.07 -37.39 REMARK 500 15 ASN A 9 42.01 -82.41 REMARK 500 15 ARG A 19 118.56 -38.36 REMARK 500 15 LEU A 23 -33.59 -39.86 REMARK 500 15 HIS A 46 86.69 -64.97 REMARK 500 15 ASP A 60 130.68 -34.77 REMARK 500 15 THR A 68 96.64 -64.61 REMARK 500 15 SER A 69 95.05 -68.03 REMARK 500 15 CYS A 98 151.45 -48.23 REMARK 500 16 ASP A 8 45.05 -82.64 REMARK 500 16 ASN A 9 77.70 -102.71 REMARK 500 16 ARG A 19 111.38 -34.61 REMARK 500 16 HIS A 46 108.64 -51.30 REMARK 500 16 ASP A 60 151.30 -36.77 REMARK 500 16 SER A 69 97.42 -69.08 REMARK 500 17 SER A 2 147.14 -172.02 REMARK 500 17 ARG A 19 120.49 -37.96 REMARK 500 17 LEU A 23 -31.06 -38.35 REMARK 500 17 LEU A 35 -39.13 -132.69 REMARK 500 17 HIS A 46 87.54 -54.52 REMARK 500 17 VAL A 71 98.04 -54.01 REMARK 500 18 SER A 2 117.34 -39.92 REMARK 500 18 ARG A 19 115.91 -39.72 REMARK 500 18 TRP A 32 44.68 -91.38 REMARK 500 18 LEU A 35 -73.64 -101.36 REMARK 500 18 ILE A 41 99.06 -54.35 REMARK 500 18 HIS A 46 92.64 -54.12 REMARK 500 18 ILE A 58 117.96 -35.10 REMARK 500 18 VAL A 71 114.88 -37.75 REMARK 500 19 LEU A 23 -33.72 -39.67 REMARK 500 19 LEU A 35 159.46 -45.85 REMARK 500 19 LEU A 36 150.34 -39.92 REMARK 500 19 PRO A 37 -179.90 -69.78 REMARK 500 19 HIS A 46 95.14 -51.68 REMARK 500 19 ILE A 58 116.89 -34.49 REMARK 500 19 ASP A 60 127.61 -39.94 REMARK 500 20 SER A 5 -59.71 -124.32 REMARK 500 20 LEU A 23 -28.27 -37.53 REMARK 500 20 LEU A 35 153.34 -44.07 REMARK 500 20 HIS A 46 93.38 -43.70 REMARK 500 20 ILE A 58 113.58 -34.77 REMARK 500 20 THR A 68 92.02 -65.92 REMARK 500 20 SER A 69 89.32 -61.83 REMARK 500 REMARK 500 REMARK: NULL
REMARK 650 REMARK 650 HELIX REMARK 650 DETERMINATION METHOD: AUTHOR DETERMINED
REMARK 700 REMARK 700 SHEET REMARK 700 DETERMINATION METHOD: AUTHOR DETERMINED
REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: AR_001000806.1 RELATED DB: TARGETDB
DBREF 2YT7 A 8 101 UNP O96018 APBA3_HUMAN 390 483
SEQADV 2YT7 GLY A 1 UNP O96018 EXPRESSION TAG SEQADV 2YT7 SER A 2 UNP O96018 EXPRESSION TAG SEQADV 2YT7 SER A 3 UNP O96018 EXPRESSION TAG SEQADV 2YT7 GLY A 4 UNP O96018 EXPRESSION TAG SEQADV 2YT7 SER A 5 UNP O96018 EXPRESSION TAG SEQADV 2YT7 SER A 6 UNP O96018 EXPRESSION TAG SEQADV 2YT7 GLY A 7 UNP O96018 EXPRESSION TAG
SEQRES 1 A 101 GLY SER SER GLY SER SER GLY ASP ASN CYS ARG GLU VAL SEQRES 2 A 101 HIS LEU GLU LYS ARG ARG GLY GLU GLY LEU GLY VAL ALA SEQRES 3 A 101 LEU VAL GLU SER GLY TRP GLY SER LEU LEU PRO THR ALA SEQRES 4 A 101 VAL ILE ALA ASN LEU LEU HIS GLY GLY PRO ALA GLU ARG SEQRES 5 A 101 SER GLY ALA LEU SER ILE GLY ASP ARG LEU THR ALA ILE SEQRES 6 A 101 ASN GLY THR SER LEU VAL GLY LEU PRO LEU ALA ALA CYS SEQRES 7 A 101 GLN ALA ALA VAL ARG GLU THR LYS SER GLN THR SER VAL SEQRES 8 A 101 THR LEU SER ILE VAL HIS CYS PRO PRO VAL
HELIX 1 1 GLU A 51 SER A 53 5 3 HELIX 2 2 LEU A 75 GLU A 84 1 10
SHEET 1 A 5 CYS A 10 GLU A 16 0 SHEET 2 A 5 SER A 90 VAL A 96 -1 O LEU A 93 N VAL A 13 SHEET 3 A 5 ARG A 61 ILE A 65 -1 N THR A 63 O SER A 94 SHEET 4 A 5 ALA A 39 LEU A 44 -1 N ALA A 39 O LEU A 62 SHEET 5 A 5 VAL A 25 GLU A 29 -1 N ALA A 26 O ASN A 43
CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 1.000000 0.000000 0.000000 0.00000
SCALE2 0.000000 1.000000 0.000000 0.00000
SCALE3 0.000000 0.000000 1.000000 0.00000