10 20 30 40 50 60 70 80 2YT6 - Header ----|----|----|----|----|----|----|----|----|----|----|----|----|----|----|----| Asymmetric UnitHEADER CELL CYCLE 05-APR-07 2YT6
TITLE SOLUTION STRUCTURE OF THE SH3_1 DOMAIN OF YAMAGUCHI SARCOMA TITLE 2 VIRAL (V-YES) ONCOGENE HOMOLOG 1
COMPND MOL_ID: 1; COMPND 2 MOLECULE: ADULT MALE URINARY BLADDER CDNA, RIKEN FULL- COMPND 3 LENGTH ENRICHED LIBRARY, CLONE:9530076O17 COMPND 4 PRODUCT:YAMAGUCHI SARCOMA VIRAL (V-YES) ONCOGENE HOMOLOG; COMPND 5 CHAIN: A; COMPND 6 FRAGMENT: SH3_1 DOMAIN; COMPND 7 ENGINEERED: YES
SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: HOUSE MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 GENE: YES1; SOURCE 6 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 7 EXPRESSION_SYSTEM_PLASMID: P050822-05; SOURCE 8 OTHER_DETAILS: CELL-FREE PROTEIN SYNTHESIS
KEYWDS NMR, SH3_1 DOMAIN, YAMAGUCHI SARCOMA VIRAL (V-YES) ONCOGENE KEYWDS 2 HOMOLOG 1, STRUCTURAL GENOMICS, NPPSFA, NATIONAL PROJECT ON KEYWDS 3 PROTEIN STRUCTURAL AND FUNCTIONAL ANALYSES, RIKEN KEYWDS 4 STRUCTURAL GENOMICS/PROTEOMICS INITIATIVE, RSGI, CELL CYCLE
EXPDTA SOLUTION NMR
NUMMDL 20
AUTHOR W.DANG,Y.MUTO,M.INOUE,T.KIGAWA,M.SHIROUZU,T.TARADA, AUTHOR 2 S.YOKOYAMA,RIKEN STRUCTURAL GENOMICS/PROTEOMICS INITIATIVE AUTHOR 3 (RSGI)
REVDAT 2 24-FEB-09 2YT6 1 VERSN REVDAT 1 08-APR-08 2YT6 0
JRNL AUTH W.DANG,Y.MUTO,M.INOUE,T.KIGAWA,M.SHIROUZU,T.TARADA, JRNL AUTH 2 S.YOKOYAMA JRNL TITL SOLUTION STRUCTURE OF THE SH3_1 DOMAIN OF JRNL TITL 2 YAMAGUCHI SARCOMA VIRAL (V-YES) ONCOGENE HOMOLOG 1 JRNL REF TO BE PUBLISHED JRNL REFN
REMARK 1
REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE.
REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CYANA 2.0.17 REMARK 3 AUTHORS : GUNTERT, P. REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL
REMARK 4 REMARK 4 2YT6 COMPLIES WITH FORMAT V. 3.15, 01-DEC-08
REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 25-JUN-07. REMARK 100 THE RCSB ID CODE IS RCSB027102.
REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 7.0 REMARK 210 IONIC STRENGTH : 120MM REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1.0MM 13C, 15N-LABELED REMARK 210 PROTEIN; 20MM D-TRIS-HCL (PH REMARK 210 7.0); 100MM NACL; 1MM D-DTT; REMARK 210 0.02% NAN3; 90% H2O, 10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_13C-SEPARATED_NOESY, 3D_ REMARK 210 15N-SEPARATED_NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : XWINNMR 3.5, NMRPIPE REMARK 210 20030801, NMRVIEW 5.0.4, REMARK 210 KUJIRA 0.9820, CYANA 2.0.17 REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LEAST REMARK 210 RESTRAINT VIOLATIONS, REMARK 210 STRUCTURES WITH THE LOWEST REMARK 210 ENERGY, TARGET FUNCTION REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL
REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS.
REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 SER A 9 87.83 -60.69 REMARK 500 1 SER A 10 144.81 -170.52 REMARK 500 1 ILE A 87 103.57 -35.51 REMARK 500 1 GLU A 90 -30.29 -35.43 REMARK 500 1 GLU A 91 -32.62 -38.34 REMARK 500 1 SER A 108 109.07 -47.51 REMARK 500 2 SER A 9 42.83 -89.68 REMARK 500 2 SER A 10 118.05 -163.86 REMARK 500 2 PRO A 20 94.66 -69.82 REMARK 500 2 THR A 21 150.88 -37.16 REMARK 500 2 ALA A 38 106.79 -51.77 REMARK 500 2 ILE A 87 103.65 -36.60 REMARK 500 2 GLU A 90 -30.59 -35.29 REMARK 500 2 GLU A 91 -32.06 -37.57 REMARK 500 2 LYS A 96 49.08 -92.16 REMARK 500 2 LYS A 100 38.79 31.27 REMARK 500 2 ASP A 101 88.08 -64.98 REMARK 500 2 ALA A 102 83.61 -68.26 REMARK 500 2 SER A 104 49.14 35.78 REMARK 500 3 SER A 6 133.50 -170.10 REMARK 500 3 ALA A 8 149.82 -170.24 REMARK 500 3 SER A 10 41.51 -81.65 REMARK 500 3 SER A 11 40.74 34.73 REMARK 500 3 ILE A 87 103.40 -35.90 REMARK 500 3 GLU A 90 -31.45 -34.98 REMARK 500 3 GLU A 91 -32.72 -37.07 REMARK 500 3 GLU A 103 108.38 -174.28 REMARK 500 4 SER A 9 41.82 -107.37 REMARK 500 4 PRO A 20 -176.73 -69.76 REMARK 500 4 ILE A 87 103.61 -33.13 REMARK 500 4 GLU A 90 -30.61 -35.28 REMARK 500 4 GLU A 91 -33.08 -37.54 REMARK 500 4 ALA A 102 103.37 -40.97 REMARK 500 4 PRO A 106 99.22 -69.81 REMARK 500 4 SER A 108 55.79 -95.88 REMARK 500 5 SER A 13 83.68 -61.36 REMARK 500 5 THR A 21 39.07 -99.00 REMARK 500 5 LEU A 23 40.24 -87.38 REMARK 500 5 ALA A 38 106.05 -51.81 REMARK 500 5 SER A 67 142.08 -39.15 REMARK 500 5 ILE A 87 103.28 -35.36 REMARK 500 5 GLU A 90 -31.20 -34.97 REMARK 500 5 GLU A 91 -31.92 -37.39 REMARK 500 6 ALA A 8 104.83 -59.09 REMARK 500 6 SER A 11 -54.84 -127.28 REMARK 500 6 VAL A 15 38.50 36.40 REMARK 500 6 PRO A 20 86.84 -69.77 REMARK 500 6 THR A 21 146.48 -34.05 REMARK 500 6 ILE A 87 103.46 -35.82 REMARK 500 6 GLU A 90 -30.70 -35.07 REMARK 500 6 GLU A 91 -32.22 -37.78 REMARK 500 6 ARG A 99 119.23 -167.62 REMARK 500 7 SER A 17 -65.26 -125.09 REMARK 500 7 THR A 24 -70.09 -44.30 REMARK 500 7 ILE A 87 103.41 -33.50 REMARK 500 7 GLU A 90 -31.22 -34.77 REMARK 500 7 GLU A 91 -33.76 -37.20 REMARK 500 8 ALA A 8 120.72 -171.42 REMARK 500 8 PHE A 12 43.93 74.62 REMARK 500 8 SER A 13 146.01 -38.22 REMARK 500 8 VAL A 15 116.45 -36.48 REMARK 500 8 THR A 24 88.41 -62.28 REMARK 500 8 ILE A 87 103.50 -33.70 REMARK 500 8 GLU A 90 -30.78 -35.24 REMARK 500 8 GLU A 91 -33.01 -37.78 REMARK 500 8 LYS A 96 -72.39 -49.02 REMARK 500 8 ARG A 99 115.86 -167.18 REMARK 500 8 GLU A 103 102.64 -46.97 REMARK 500 9 ALA A 38 106.47 -52.27 REMARK 500 9 ILE A 87 103.65 -40.79 REMARK 500 9 GLU A 90 -30.79 -35.26 REMARK 500 9 GLU A 91 -32.71 -37.67 REMARK 500 9 MET A 97 147.16 -36.41 REMARK 500 9 LYS A 100 129.09 -171.81 REMARK 500 10 SER A 2 42.24 38.68 REMARK 500 10 ALA A 8 118.76 -174.92 REMARK 500 10 VAL A 15 131.75 -172.12 REMARK 500 10 LYS A 48 106.72 -58.46 REMARK 500 10 ILE A 87 103.49 -35.59 REMARK 500 10 GLU A 90 -31.14 -34.97 REMARK 500 10 GLU A 91 -33.69 -37.16 REMARK 500 10 LYS A 96 134.30 -33.22 REMARK 500 10 SER A 104 125.04 -173.21 REMARK 500 10 SER A 108 134.60 -170.15 REMARK 500 11 SER A 6 126.14 -172.46 REMARK 500 11 SER A 18 161.27 -44.68 REMARK 500 11 ILE A 87 104.50 -38.90 REMARK 500 11 GLU A 90 -28.04 -36.29 REMARK 500 11 LYS A 96 149.18 -34.43 REMARK 500 11 MET A 97 105.43 -39.15 REMARK 500 12 PRO A 20 -179.17 -69.80 REMARK 500 12 ILE A 87 103.39 -38.56 REMARK 500 12 GLU A 90 -28.70 -35.92 REMARK 500 12 ARG A 99 -59.89 -124.30 REMARK 500 12 SER A 108 41.93 -84.32 REMARK 500 13 ALA A 8 107.30 -174.31 REMARK 500 13 SER A 13 123.47 -174.88 REMARK 500 13 VAL A 15 -69.19 -128.69 REMARK 500 13 SER A 16 -70.79 -102.33 REMARK 500 13 PRO A 20 -165.16 -69.69 REMARK 500 13 LEU A 23 148.64 -32.92 REMARK 500 13 ALA A 38 108.36 -53.56 REMARK 500 13 ILE A 87 103.51 -34.22 REMARK 500 13 GLU A 90 -31.16 -34.97 REMARK 500 13 GLU A 91 -34.55 -37.41 REMARK 500 13 ALA A 102 110.71 -166.95 REMARK 500 14 SER A 5 116.26 -163.75 REMARK 500 14 ALA A 38 106.97 -51.81 REMARK 500 14 ILE A 87 103.52 -41.17 REMARK 500 14 GLU A 90 -30.37 -35.20 REMARK 500 14 GLU A 91 -35.19 -38.55 REMARK 500 14 ASP A 101 114.61 -171.78 REMARK 500 14 PRO A 106 98.83 -69.76 REMARK 500 15 SER A 10 42.88 -101.57 REMARK 500 15 SER A 18 136.28 -39.40 REMARK 500 15 ILE A 87 103.61 -33.70 REMARK 500 15 GLU A 90 -29.63 -35.49 REMARK 500 15 GLU A 91 -32.26 -39.22 REMARK 500 15 ARG A 99 136.71 -39.80 REMARK 500 15 GLU A 103 -60.31 -121.10 REMARK 500 16 SER A 10 117.06 -172.69 REMARK 500 16 THR A 21 47.75 -76.34 REMARK 500 16 ASN A 79 -17.80 -49.41 REMARK 500 16 ILE A 87 103.63 -35.93 REMARK 500 16 GLU A 90 -28.93 -35.65 REMARK 500 16 GLU A 91 -31.42 -38.87 REMARK 500 16 MET A 97 154.06 -46.94 REMARK 500 16 ARG A 99 102.06 -51.05 REMARK 500 16 PRO A 106 93.87 -69.73 REMARK 500 17 SER A 5 150.18 -37.31 REMARK 500 17 SER A 13 125.12 -172.67 REMARK 500 17 SER A 17 178.58 -56.59 REMARK 500 17 ALA A 38 106.09 -52.57 REMARK 500 17 ILE A 87 103.39 -33.20 REMARK 500 17 GLU A 90 -30.59 -35.24 REMARK 500 17 GLU A 91 -32.24 -37.60 REMARK 500 17 GLU A 103 94.94 -63.55 REMARK 500 17 SER A 108 144.36 -170.84 REMARK 500 18 SER A 2 51.49 35.05 REMARK 500 18 TYR A 19 140.32 -38.09 REMARK 500 18 ILE A 87 103.49 -33.62 REMARK 500 18 GLU A 90 -28.91 -35.81 REMARK 500 18 GLU A 91 -30.83 -39.15 REMARK 500 18 ARG A 99 140.67 -174.15 REMARK 500 18 ALA A 102 112.51 -37.74 REMARK 500 19 PHE A 12 134.72 -35.42 REMARK 500 19 ILE A 87 103.26 -35.24 REMARK 500 19 GLU A 90 -31.27 -34.82 REMARK 500 19 GLU A 91 -33.31 -37.15 REMARK 500 20 SER A 18 118.18 -165.95 REMARK 500 20 PRO A 20 -172.49 -69.70 REMARK 500 20 ALA A 38 106.38 -51.62 REMARK 500 20 ILE A 68 -62.10 -93.43 REMARK 500 20 ILE A 87 103.78 -40.36 REMARK 500 20 GLU A 90 -28.70 -35.83 REMARK 500 20 GLU A 91 -31.35 -38.96 REMARK 500 20 PRO A 106 -178.02 -69.76 REMARK 500 20 SER A 107 112.21 -160.38 REMARK 500 REMARK 500 REMARK: NULL
REMARK 650 REMARK 650 HELIX REMARK 650 DETERMINATION METHOD: AUTHOR DETERMINED
REMARK 700 REMARK 700 SHEET REMARK 700 DETERMINATION METHOD: AUTHOR DETERMINED
REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: MMT008005407.1 RELATED DB: TARGETDB
DBREF 2YT6 A 8 103 UNP Q8CBP1 Q8CBP1_MOUSE 72 167
SEQADV 2YT6 GLY A 1 UNP Q8CBP1 EXPRESSION TAG SEQADV 2YT6 SER A 2 UNP Q8CBP1 EXPRESSION TAG SEQADV 2YT6 SER A 3 UNP Q8CBP1 EXPRESSION TAG SEQADV 2YT6 GLY A 4 UNP Q8CBP1 EXPRESSION TAG SEQADV 2YT6 SER A 5 UNP Q8CBP1 EXPRESSION TAG SEQADV 2YT6 SER A 6 UNP Q8CBP1 EXPRESSION TAG SEQADV 2YT6 GLY A 7 UNP Q8CBP1 EXPRESSION TAG SEQADV 2YT6 SER A 104 UNP Q8CBP1 EXPRESSION TAG SEQADV 2YT6 GLY A 105 UNP Q8CBP1 EXPRESSION TAG SEQADV 2YT6 PRO A 106 UNP Q8CBP1 EXPRESSION TAG SEQADV 2YT6 SER A 107 UNP Q8CBP1 EXPRESSION TAG SEQADV 2YT6 SER A 108 UNP Q8CBP1 EXPRESSION TAG SEQADV 2YT6 GLY A 109 UNP Q8CBP1 EXPRESSION TAG
SEQRES 1 A 109 GLY SER SER GLY SER SER GLY ALA SER SER SER PHE SER SEQRES 2 A 109 VAL VAL SER SER SER TYR PRO THR GLY LEU THR GLY GLY SEQRES 3 A 109 VAL THR ILE PHE VAL ALA LEU TYR ASP TYR GLU ALA ARG SEQRES 4 A 109 THR THR GLU ASP LEU SER PHE LYS LYS GLY GLU ARG PHE SEQRES 5 A 109 GLN ILE ILE ASN ASN THR GLU GLY ASP TRP TRP GLU ALA SEQRES 6 A 109 ARG SER ILE ALA THR GLY LYS SER GLY TYR ILE PRO SER SEQRES 7 A 109 ASN TYR VAL VAL PRO ALA ASP SER ILE GLN ALA GLU GLU SEQRES 8 A 109 TRP TYR PHE GLY LYS MET GLY ARG LYS ASP ALA GLU SER SEQRES 9 A 109 GLY PRO SER SER GLY
HELIX 1 1 GLU A 90 GLY A 95 1 6
SHEET 1 A 5 SER A 73 PRO A 77 0 SHEET 2 A 5 TRP A 62 SER A 67 -1 N TRP A 63 O ILE A 76 SHEET 3 A 5 ARG A 51 ILE A 54 -1 N ILE A 55 O GLU A 64 SHEET 4 A 5 ILE A 29 ALA A 32 -1 N PHE A 30 O PHE A 52 SHEET 5 A 5 VAL A 81 PRO A 83 -1 O VAL A 82 N VAL A 31
CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 1.000000 0.000000 0.000000 0.00000
SCALE2 0.000000 1.000000 0.000000 0.00000
SCALE3 0.000000 0.000000 1.000000 0.00000