10 20 30 40 50 60 70 80 2YSV - Header ----|----|----|----|----|----|----|----|----|----|----|----|----|----|----|----| Asymmetric UnitHEADER METAL BINDING PROTEIN 04-APR-07 2YSV
TITLE SOLUTION STRUCTURE OF C2H2 TYPE ZINC FINGER DOMAIN 17 IN TITLE 2 ZINC FINGER PROTEIN 473
COMPND MOL_ID: 1; COMPND 2 MOLECULE: ZINC FINGER PROTEIN 473; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: ZINC FINGER DOMAIN; COMPND 5 SYNONYM: ZINC FINGER PROTEIN 100 HOMOLOG, ZFP-100; COMPND 6 ENGINEERED: YES
SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: ZNF473, KIAA1141, ZFP100; SOURCE 6 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 7 EXPRESSION_SYSTEM_PLASMID: P070115-34; SOURCE 8 OTHER_DETAILS: CELL-FREE PROTEIN SYNTHESIS
KEYWDS ZINC FINGER DOMAIN, C2H2, STRUCTURAL GENOMICS, NPPSFA, KEYWDS 2 NATIONAL PROJECT ON PROTEIN STRUCTURAL AND FUNCTIONAL KEYWDS 3 ANALYSES, RIKEN STRUCTURAL GENOMICS/PROTEOMICS INITIATIVE, KEYWDS 4 RSGI, METAL BINDING PROTEIN
EXPDTA SOLUTION NMR
NUMMDL 20
AUTHOR K.TSUDA,Y.MUTO,M.INOUE,T.KIGAWA,T.TERADA,M.SHIROUZU, AUTHOR 2 S.YOKOYAMA,RIKEN STRUCTURAL GENOMICS/PROTEOMICS INITIATIVE AUTHOR 3 (RSGI)
REVDAT 2 24-FEB-09 2YSV 1 VERSN REVDAT 1 09-OCT-07 2YSV 0
JRNL AUTH K.TSUDA,Y.MUTO,M.INOUE,T.KIGAWA,T.TERADA, JRNL AUTH 2 M.SHIROUZU,S.YOKOYAMA JRNL TITL SOLUTION STRUCTURE OF C2H2 TYPE ZINC FINGER DOMAIN JRNL TITL 2 17 IN ZINC FINGER PROTEIN 473 JRNL REF TO BE PUBLISHED JRNL REFN
REMARK 1
REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE.
REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CYANA 2.1 REMARK 3 AUTHORS : GUNTERT,P REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL
REMARK 4 REMARK 4 2YSV COMPLIES WITH FORMAT V. 3.15, 01-DEC-08
REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 13-APR-07. REMARK 100 THE RCSB ID CODE IS RCSB027091.
REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 7.0 REMARK 210 IONIC STRENGTH : 120MM REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1.15MM 13C-15N PROTEIN, 20MM REMARK 210 D-TRIS-HCL(PH7.0), 100MM NACL, REMARK 210 1MM D-DTT, 0.02% NAN3, 0.05MM REMARK 210 ZNCL2+1MM IDA, 90% H2O,10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_13C-SEPARATED_NOESY, 3D_ REMARK 210 15N-SEPARATED_NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : XWINNMR 3.5, NMRPIPE REMARK 210 20060702, NMRVIEW 5.0.4, REMARK 210 KUJIRA 0.9825, CYANA 2.1 REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS, REMARK 210 RESTRAINTED MOLECULAR DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LEAST REMARK 210 RESTRAINT VIOLATIONS, REMARK 210 STRUCTURES WITH THE LOWEST REMARK 210 ENERGY,TARGET FUNCTION REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL
REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS.
REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 TYR A 758 95.63 -62.11 REMARK 500 1 HIS A 780 48.54 -104.86 REMARK 500 2 LYS A 756 70.23 -165.92 REMARK 500 2 LYS A 765 121.02 -172.94 REMARK 500 2 SER A 774 -73.27 -56.80 REMARK 500 2 VAL A 779 45.45 -94.02 REMARK 500 3 GLN A 769 -70.35 -52.19 REMARK 500 3 SER A 774 -72.10 -53.21 REMARK 500 3 VAL A 779 36.77 -96.26 REMARK 500 4 LYS A 756 70.43 -173.01 REMARK 500 4 PHE A 767 -65.07 -92.95 REMARK 500 4 GLN A 769 -52.88 -129.69 REMARK 500 4 SER A 771 48.39 -90.59 REMARK 500 4 SER A 774 -70.82 -55.04 REMARK 500 4 HIS A 780 89.15 -68.17 REMARK 500 5 SER A 749 145.34 -174.72 REMARK 500 5 GLN A 769 -73.74 -55.12 REMARK 500 5 SER A 774 -70.99 -57.40 REMARK 500 5 VAL A 779 43.91 -103.42 REMARK 500 6 PRO A 757 101.25 -48.44 REMARK 500 6 GLN A 761 40.61 -100.47 REMARK 500 6 GLU A 762 -43.43 -130.71 REMARK 500 6 SER A 774 -73.44 -55.11 REMARK 500 6 VAL A 779 31.67 -95.74 REMARK 500 7 GLU A 783 87.60 -68.60 REMARK 500 8 SER A 774 -72.02 -54.94 REMARK 500 8 GLU A 783 -63.44 -126.50 REMARK 500 9 VAL A 779 37.83 -98.04 REMARK 500 10 CYS A 760 105.92 -56.62 REMARK 500 10 LYS A 765 114.12 -162.12 REMARK 500 11 SER A 774 -73.26 -53.64 REMARK 500 11 HIS A 780 89.77 -67.03 REMARK 500 11 SER A 787 46.57 -93.00 REMARK 500 12 SER A 774 -70.13 -53.13 REMARK 500 12 HIS A 780 88.23 -67.97 REMARK 500 12 SER A 784 142.19 -170.20 REMARK 500 12 PRO A 786 151.38 -49.23 REMARK 500 13 LYS A 756 70.98 57.31 REMARK 500 13 SER A 770 145.26 -173.47 REMARK 500 13 SER A 774 -73.01 -55.76 REMARK 500 13 PRO A 786 161.93 -48.45 REMARK 500 14 GLU A 762 -43.13 -130.84 REMARK 500 14 SER A 774 -73.09 -52.16 REMARK 500 14 GLU A 783 94.52 -62.88 REMARK 500 14 SER A 787 -68.97 -90.44 REMARK 500 15 LYS A 756 68.31 -171.91 REMARK 500 15 GLN A 761 47.64 -97.43 REMARK 500 15 GLU A 762 -46.63 -130.50 REMARK 500 15 VAL A 779 42.59 -98.53 REMARK 500 16 SER A 750 66.26 -108.55 REMARK 500 16 SER A 753 -56.86 -131.42 REMARK 500 16 LYS A 756 69.26 -177.76 REMARK 500 16 VAL A 779 46.05 -91.32 REMARK 500 17 GLU A 755 134.90 -170.73 REMARK 500 17 LYS A 756 69.13 -176.73 REMARK 500 17 GLN A 769 -74.26 -54.95 REMARK 500 17 SER A 774 -70.83 -56.91 REMARK 500 17 THR A 781 76.41 -110.56 REMARK 500 18 SER A 753 134.37 -173.34 REMARK 500 18 THR A 768 42.67 -107.94 REMARK 500 18 GLN A 769 -52.26 -127.75 REMARK 500 18 SER A 774 -73.13 -56.79 REMARK 500 19 SER A 749 69.20 -103.95 REMARK 500 19 SER A 750 -43.00 -132.70 REMARK 500 19 GLU A 755 108.38 -169.42 REMARK 500 19 LYS A 756 71.78 -151.12 REMARK 500 19 THR A 768 -70.56 -99.85 REMARK 500 19 GLN A 769 -44.12 -134.76 REMARK 500 19 HIS A 780 86.36 -68.82 REMARK 500 20 THR A 768 -70.54 -121.83 REMARK 500 20 PRO A 786 151.01 -48.63 REMARK 500 REMARK 500 REMARK: NULL
REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 1 ZN A 201 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 760 SG REMARK 620 2 CYS A 763 SG 110.6 REMARK 620 3 HIS A 776 NE2 107.6 114.7 REMARK 620 4 HIS A 780 NE2 101.5 112.1 109.4 REMARK 620 N 1 2 3
REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 201
REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: HSO003003493.17 RELATED DB: TARGETDB
DBREF 2YSV A 755 783 UNP Q8WTR7 ZN473_HUMAN 755 783
SEQADV 2YSV GLY A 748 UNP Q8WTR7 EXPRESSION TAG SEQADV 2YSV SER A 749 UNP Q8WTR7 EXPRESSION TAG SEQADV 2YSV SER A 750 UNP Q8WTR7 EXPRESSION TAG SEQADV 2YSV GLY A 751 UNP Q8WTR7 EXPRESSION TAG SEQADV 2YSV SER A 752 UNP Q8WTR7 EXPRESSION TAG SEQADV 2YSV SER A 753 UNP Q8WTR7 EXPRESSION TAG SEQADV 2YSV GLY A 754 UNP Q8WTR7 EXPRESSION TAG SEQADV 2YSV SER A 784 UNP Q8WTR7 EXPRESSION TAG SEQADV 2YSV GLY A 785 UNP Q8WTR7 EXPRESSION TAG SEQADV 2YSV PRO A 786 UNP Q8WTR7 EXPRESSION TAG SEQADV 2YSV SER A 787 UNP Q8WTR7 EXPRESSION TAG SEQADV 2YSV SER A 788 UNP Q8WTR7 EXPRESSION TAG SEQADV 2YSV GLY A 789 UNP Q8WTR7 EXPRESSION TAG
SEQRES 1 A 42 GLY SER SER GLY SER SER GLY GLU LYS PRO TYR VAL CYS SEQRES 2 A 42 GLN GLU CYS GLY LYS ALA PHE THR GLN SER SER CYS LEU SEQRES 3 A 42 SER ILE HIS ARG ARG VAL HIS THR GLY GLU SER GLY PRO SEQRES 4 A 42 SER SER GLY
HET ZN A 201 1
HETNAM ZN ZINC ION
FORMUL 2 ZN ZN 2+
HELIX 1 1 SER A 771 VAL A 779 1 9
LINK SG CYS A 760 ZN ZN A 201 1555 1555 2.33 LINK SG CYS A 763 ZN ZN A 201 1555 1555 2.25 LINK NE2 HIS A 776 ZN ZN A 201 1555 1555 2.03 LINK NE2 HIS A 780 ZN ZN A 201 1555 1555 2.09
SITE 1 AC1 4 CYS A 760 CYS A 763 HIS A 776 HIS A 780
CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 1.000000 0.000000 0.000000 0.00000
SCALE2 0.000000 1.000000 0.000000 0.00000
SCALE3 0.000000 0.000000 1.000000 0.00000