10 20 30 40 50 60 70 80 2YSA - Header ----|----|----|----|----|----|----|----|----|----|----|----|----|----|----|----| Asymmetric UnitHEADER METAL BINDING PROTEIN 03-APR-07 2YSA
TITLE SOLUTION STRUCTURE OF THE ZINC FINGER CCHC DOMAIN FROM THE TITLE 2 HUMAN RETINOBLASTOMA-BINDING PROTEIN 6 (RETINOBLASTOMA- TITLE 3 BINDING Q PROTEIN 1, RBQ-1)
COMPND MOL_ID: 1; COMPND 2 MOLECULE: RETINOBLASTOMA-BINDING PROTEIN 6; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: ZF-CCHC DOMAIN; COMPND 5 SYNONYM: P53-ASSOCIATED CELLULAR PROTEIN OF TESTIS, COMPND 6 PROLIFERATION POTENTIAL-RELATED PROTEIN, PROTEIN P2P-R, COMPND 7 RETINOBLASTOMA-BINDING Q PROTEIN 1, PROTEIN RBQ-1; COMPND 8 ENGINEERED: YES
SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: RBBP6; SOURCE 6 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 7 EXPRESSION_SYSTEM_PLASMID: P060522-23; SOURCE 8 OTHER_DETAILS: CELL-FREE PROTEIN SYNTHESIS
KEYWDS ZINC FINGER, CCHC, NMR, STRUCTURAL GENOMICS, NPPSFA, KEYWDS 2 NATIONAL PROJECT ON PROTEIN STRUCTURAL AND FUNCTIONAL KEYWDS 3 ANALYSES, RIKEN STRUCTURAL GENOMICS/PROTEOMICS INITIATIVE, KEYWDS 4 RSGI, METAL BINDING PROTEIN
EXPDTA SOLUTION NMR
NUMMDL 20
AUTHOR S.OHNISHI,M.SATO,N.TOCHIO,S.KOSHIBA,T.HARADA,S.WATANABE, AUTHOR 2 T.KIGAWA,S.YOKOYAMA,RIKEN STRUCTURAL GENOMICS/PROTEOMICS AUTHOR 3 INITIATIVE (RSGI)
REVDAT 2 24-FEB-09 2YSA 1 VERSN REVDAT 1 09-OCT-07 2YSA 0
JRNL AUTH S.OHNISHI,M.SATO,N.TOCHIO,S.KOSHIBA,T.HARADA, JRNL AUTH 2 S.WATANABE,T.KIGAWA,S.YOKOYAMA JRNL TITL SOLUTION STRUCTURE OF THE ZINC FINGER CCHC DOMAIN JRNL TITL 2 FROM THE HUMAN RETINOBLASTOMA-BINDING PROTEIN 6 JRNL TITL 3 (RETINOBLASTOMA-BINDING Q PROTEIN 1, RBQ-1) JRNL REF TO BE PUBLISHED JRNL REFN
REMARK 1
REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE.
REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CYANA 2.0.17 REMARK 3 AUTHORS : GUNTERT, P. REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL
REMARK 4 REMARK 4 2YSA COMPLIES WITH FORMAT V. 3.15, 01-DEC-08
REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 22-JUN-07. REMARK 100 THE RCSB ID CODE IS RCSB027070.
REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 296 REMARK 210 PH : 7.0 REMARK 210 IONIC STRENGTH : 120MM REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 0.8MM SAMPLE U-15N,13C; 20MM REMARK 210 D-TRIS-HCL; 100MM NACL; 1MM D- REMARK 210 DTT; 0.02% NAN3; 90% H2O, 10% REMARK 210 D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_13C-SEPARATED_NOESY, 3D_ REMARK 210 15N-SEPARATED_NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : XWINNMR 3.5, NMRPIPE REMARK 210 20030801, NMRVIEW 5.0.4, REMARK 210 KUJIRA 0.9820, CYANA 2.0.17 REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LEAST REMARK 210 RESTRAINT VIOLATIONS, TARGET REMARK 210 FUNCTION REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL
REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS.
REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 PRO A 16 -179.12 -69.78 REMARK 500 2 TYR A 8 176.35 -53.26 REMARK 500 2 PRO A 16 -174.58 -69.74 REMARK 500 2 THR A 25 -33.20 -34.13 REMARK 500 3 TYR A 8 172.51 -53.99 REMARK 500 3 LYS A 29 -62.86 -97.96 REMARK 500 3 PRO A 35 2.79 -69.83 REMARK 500 3 PRO A 44 80.17 -69.76 REMARK 500 3 PRO A 54 2.82 -69.79 REMARK 500 4 CYS A 10 109.84 -52.04 REMARK 500 4 PRO A 16 -178.08 -69.72 REMARK 500 4 THR A 25 -39.34 -35.57 REMARK 500 4 PRO A 35 2.91 -69.73 REMARK 500 4 PRO A 44 9.96 -69.69 REMARK 500 5 TYR A 8 176.63 -51.99 REMARK 500 5 ASN A 26 102.18 -52.12 REMARK 500 6 PRO A 16 -177.22 -69.72 REMARK 500 6 THR A 25 -33.35 -37.49 REMARK 500 6 PRO A 54 2.69 -69.78 REMARK 500 7 PRO A 16 -174.99 -69.73 REMARK 500 7 PRO A 44 83.96 -69.76 REMARK 500 7 PHE A 47 109.26 -56.05 REMARK 500 8 TYR A 8 175.51 -54.74 REMARK 500 8 ASN A 30 107.74 -52.02 REMARK 500 8 THR A 41 -34.94 -39.38 REMARK 500 8 PRO A 54 3.08 -69.69 REMARK 500 9 PRO A 16 -178.41 -69.80 REMARK 500 9 THR A 25 -39.52 -33.33 REMARK 500 9 GLU A 32 -63.41 -97.07 REMARK 500 9 PRO A 44 -171.28 -69.83 REMARK 500 9 ARG A 45 -38.80 -33.78 REMARK 500 10 PRO A 16 -176.31 -69.72 REMARK 500 10 THR A 25 -33.94 -38.18 REMARK 500 11 PRO A 16 -178.09 -69.83 REMARK 500 11 THR A 25 -38.32 -34.66 REMARK 500 11 PRO A 54 1.98 -69.73 REMARK 500 12 PRO A 44 -164.13 -69.73 REMARK 500 12 ARG A 45 -39.64 -39.55 REMARK 500 13 TYR A 8 176.92 -52.05 REMARK 500 13 ARG A 12 -64.83 -93.30 REMARK 500 13 PRO A 16 -174.32 -69.73 REMARK 500 14 PRO A 16 -178.85 -69.73 REMARK 500 14 THR A 25 -36.85 -34.04 REMARK 500 15 LYS A 29 177.16 -53.08 REMARK 500 15 PRO A 35 2.85 -69.79 REMARK 500 15 PRO A 44 -90.82 -69.76 REMARK 500 16 PRO A 16 -177.40 -69.75 REMARK 500 16 ILE A 20 -9.64 -59.21 REMARK 500 16 LYS A 29 -65.56 -96.52 REMARK 500 16 PRO A 44 5.00 -69.72 REMARK 500 16 PHE A 47 176.66 -55.10 REMARK 500 17 SER A 3 174.14 -58.71 REMARK 500 17 TYR A 8 177.75 -52.15 REMARK 500 17 THR A 25 -28.76 -37.87 REMARK 500 17 ASP A 28 107.88 -59.51 REMARK 500 17 PRO A 35 -178.58 -69.78 REMARK 500 18 PRO A 16 -176.28 -69.73 REMARK 500 18 THR A 25 -39.51 -38.17 REMARK 500 18 PRO A 35 -174.78 -69.72 REMARK 500 18 PRO A 44 -167.83 -69.80 REMARK 500 19 PRO A 16 -177.64 -69.78 REMARK 500 19 THR A 25 -36.25 -36.02 REMARK 500 19 ASN A 26 108.23 -53.59 REMARK 500 19 PRO A 54 3.60 -69.72 REMARK 500 REMARK 500 REMARK: NULL
REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 1 ZN A 181 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 10 SG REMARK 620 2 CYS A 13 SG 114.6 REMARK 620 3 HIS A 18 NE2 96.2 115.2 REMARK 620 4 CYS A 23 SG 98.6 119.2 109.6 REMARK 620 N 1 2 3
REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 181
REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: HSO002000490.2 RELATED DB: TARGETDB
DBREF 2YSA A 8 55 UNP Q7Z6E9 RBBP6_HUMAN 159 206
SEQADV 2YSA GLY A 1 UNP Q7Z6E9 EXPRESSION TAG SEQADV 2YSA SER A 2 UNP Q7Z6E9 EXPRESSION TAG SEQADV 2YSA SER A 3 UNP Q7Z6E9 EXPRESSION TAG SEQADV 2YSA GLY A 4 UNP Q7Z6E9 EXPRESSION TAG SEQADV 2YSA SER A 5 UNP Q7Z6E9 EXPRESSION TAG SEQADV 2YSA SER A 6 UNP Q7Z6E9 EXPRESSION TAG SEQADV 2YSA GLY A 7 UNP Q7Z6E9 EXPRESSION TAG
SEQRES 1 A 55 GLY SER SER GLY SER SER GLY TYR THR CYS PHE ARG CYS SEQRES 2 A 55 GLY LYS PRO GLY HIS TYR ILE LYS ASN CYS PRO THR ASN SEQRES 3 A 55 GLY ASP LYS ASN PHE GLU SER GLY PRO ARG ILE LYS LYS SEQRES 4 A 55 SER THR GLY ILE PRO ARG SER PHE MET MET GLU VAL LYS SEQRES 5 A 55 ASP PRO ASN
HET ZN A 181 1
HETNAM ZN ZINC ION
FORMUL 2 ZN ZN 2+
HELIX 1 1 TYR A 19 CYS A 23 5 5 HELIX 2 2 PRO A 24 ASP A 28 5 5
LINK SG CYS A 10 ZN ZN A 181 1555 1555 2.39 LINK SG CYS A 13 ZN ZN A 181 1555 1555 2.29 LINK NE2 HIS A 18 ZN ZN A 181 1555 1555 2.10 LINK SG CYS A 23 ZN ZN A 181 1555 1555 2.30
SITE 1 AC1 4 CYS A 10 CYS A 13 HIS A 18 CYS A 23
CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 1.000000 0.000000 0.000000 0.00000
SCALE2 0.000000 1.000000 0.000000 0.00000
SCALE3 0.000000 0.000000 1.000000 0.00000